EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR401C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Dihydrouridine synthase%3B member of a widespread family of conserved proteins including Smm1p%2C Dus1p%2C and Dus4p%3B contains a consensus oleate response element (ORE) in its promoter region%3B forms nuclear foci upon DNA replication stress
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2007 bases
Position: chrXII:922442-924448
Accession: S000004393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR401C_mRNA	Dus	PF01207.17	2.8e-44	1	2
YLR401C_mRNA	Dus	PF01207.17	2.8e-44	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR401C_mRNA	-	2007	-	YLR401C_mRNA	668 (aa)	-	Q06053

Gene Model

Click here to download YLR401C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR401C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR401C	-	93	36.909	ENSG00000141994	DUS3L	92	42.857	Homo_sapiens
YLR401C	-	97	35.207	ENSAPOG00000016764	dus3l	86	36.486	Acanthochromis_polyacanthus
YLR401C	-	96	35.693	ENSAMEG00000012423	-	99	34.402	Ailuropoda_melanoleuca
YLR401C	-	97	35.503	ENSAOCG00000004343	dus3l	86	36.824	Amphiprion_ocellaris
YLR401C	-	97	35.503	ENSAPEG00000005828	dus3l	86	36.824	Amphiprion_percula
YLR401C	-	87	37.437	ENSATEG00000011064	dus3l	86	36.471	Anabas_testudineus
YLR401C	-	89	37.937	ENSAPLG00000004636	-	87	37.543	Anas_platyrhynchos
YLR401C	-	85	31.119	ENSACAG00000012955	-	86	30.648	Anolis_carolinensis
YLR401C	-	88	37.793	ENSANAG00000021997	DUS3L	86	43.467	Aotus_nancymaae
YLR401C	-	97	36.350	ENSACLG00000011576	dus3l	98	35.364	Astatotilapia_calliptera
YLR401C	-	66	49.057	ENSAMXG00000043269	dus3l	71	49.057	Astyanax_mexicanus
YLR401C	-	88	38.063	ENSBTAG00000011842	DUS3L	84	37.479	Bos_taurus
YLR401C	-	95	33.489	WBGene00021377	Y37E11B.5	88	35.253	Caenorhabditis_elegans
YLR401C	-	89	37.416	ENSCJAG00000016997	DUS3L	86	43.122	Callithrix_jacchus
YLR401C	-	96	35.843	ENSCAFG00000018762	DUS3L	97	34.887	Canis_familiaris
YLR401C	-	96	35.843	ENSCAFG00020018976	-	97	34.887	Canis_lupus_dingo
YLR401C	-	98	35.601	ENSCHIG00000021327	-	98	34.588	Capra_hircus
YLR401C	-	88	35.372	ENSCAPG00000012525	DUS3L	90	34.609	Cavia_aperea
YLR401C	-	98	35.947	ENSCPOG00000021236	DUS3L	83	37.607	Cavia_porcellus
YLR401C	-	88	37.625	ENSCCAG00000036889	DUS3L	86	43.733	Cebus_capucinus
YLR401C	-	93	37.640	ENSCATG00000040809	DUS3L	86	44.267	Cercocebus_atys
YLR401C	-	88	37.438	ENSCLAG00000008470	DUS3L	84	36.887	Chinchilla_lanigera
YLR401C	-	93	37.480	ENSCSAG00000009883	DUS3L	84	38.632	Chlorocebus_sabaeus
YLR401C	-	88	35.852	ENSCPBG00000011136	-	84	35.437	Chrysemys_picta_bellii
YLR401C	-	96	36.068	ENSCING00000004940	zf(c3h)-5	98	35.614	Ciona_intestinalis
YLR401C	-	88	36.639	ENSCSAVG00000000525	-	99	36.007	Ciona_savignyi
YLR401C	-	93	37.640	ENSCANG00000036677	DUS3L	86	44.000	Colobus_angolensis_palliatus
YLR401C	-	88	36.842	ENSCGRG00001023361	Dus3l	84	36.239	Cricetulus_griseus_chok1gshd
YLR401C	-	88	36.842	ENSCGRG00000005214	Dus3l	84	36.239	Cricetulus_griseus_crigri
YLR401C	-	88	37.902	ENSCSEG00000014994	dus3l	85	37.585	Cynoglossus_semilaevis
YLR401C	-	84	35.263	ENSCVAG00000007874	dus3l	82	34.798	Cyprinodon_variegatus
YLR401C	-	91	33.748	ENSDARG00000099528	dus3l	99	44.898	Danio_rerio
YLR401C	-	55	34.153	ENSDNOG00000048551	-	86	30.892	Dasypus_novemcinctus
YLR401C	-	56	44.267	ENSDORG00000006754	Dus3l	68	44.032	Dipodomys_ordii
YLR401C	-	95	34.562	FBgn0032819	CG10463	99	34.562	Drosophila_melanogaster
YLR401C	-	95	34.531	ENSEBUG00000010532	dus3l	84	34.531	Eptatretus_burgeri
YLR401C	-	57	30.025	ENSEASG00005023094	-	67	30.523	Equus_asinus_asinus
YLR401C	-	88	36.842	ENSECAG00000019359	-	82	36.239	Equus_caballus
YLR401C	-	89	35.655	ENSELUG00000015033	dus3l	90	34.760	Esox_lucius
YLR401C	-	96	35.522	ENSFCAG00000027534	-	93	40.097	Felis_catus
YLR401C	-	87	36.220	ENSFALG00000001343	-	89	35.703	Ficedula_albicollis
YLR401C	-	81	38.718	ENSFDAG00000014182	DUS3L	76	40.206	Fukomys_damarensis
YLR401C	-	89	38.040	ENSFHEG00000010091	dus3l	85	37.966	Fundulus_heteroclitus
YLR401C	-	57	41.689	ENSGMOG00000011366	dus3l	92	41.689	Gadus_morhua
YLR401C	-	88	36.885	ENSGALG00000001800	-	83	36.258	Gallus_gallus
YLR401C	-	89	37.092	ENSGAFG00000008857	dus3l	85	36.938	Gambusia_affinis
YLR401C	-	89	36.606	ENSGACG00000004109	dus3l	89	36.074	Gasterosteus_aculeatus
YLR401C	-	88	37.733	ENSGAGG00000005527	-	94	35.738	Gopherus_agassizii
YLR401C	-	93	34.272	ENSGGOG00000027433	DUS3L	84	39.200	Gorilla_gorilla
YLR401C	-	97	35.575	ENSHBUG00000022232	dus3l	98	35.277	Haplochromis_burtoni
YLR401C	-	98	35.234	ENSHGLG00000013475	DUS3L	98	34.361	Heterocephalus_glaber_female
YLR401C	-	98	35.234	ENSHGLG00100007077	DUS3L	98	34.361	Heterocephalus_glaber_male
YLR401C	-	99	35.756	ENSHCOG00000016072	dus3l	86	37.268	Hippocampus_comes
YLR401C	-	88	37.983	ENSIPUG00000004025	dus3l	86	37.669	Ictalurus_punctatus
YLR401C	-	99	36.075	ENSSTOG00000025017	DUS3L	84	39.012	Ictidomys_tridecemlineatus
YLR401C	-	93	34.340	ENSJJAG00000023742	Dus3l	86	35.678	Jaculus_jaculus
YLR401C	-	97	34.700	ENSKMAG00000009675	dus3l	86	36.333	Kryptolebias_marmoratus
YLR401C	-	89	36.273	ENSLBEG00000015795	dus3l	84	35.884	Labrus_bergylta
YLR401C	-	92	33.835	ENSLACG00000001204	dus3l	85	33.810	Latimeria_chalumnae
YLR401C	-	88	35.893	ENSLOCG00000010531	dus3l	84	35.784	Lepisosteus_oculatus
YLR401C	-	96	35.756	ENSLAFG00000027552	-	99	35.014	Loxodonta_africana
YLR401C	-	93	37.480	ENSMFAG00000031910	DUS3L	86	44.267	Macaca_fascicularis
YLR401C	-	56	44.267	ENSMMUG00000031027	DUS3L	86	44.267	Macaca_mulatta
YLR401C	-	57	44.262	ENSMNEG00000036509	DUS3L	59	44.262	Macaca_nemestrina
YLR401C	-	93	37.640	ENSMLEG00000043222	DUS3L	86	44.267	Mandrillus_leucophaeus
YLR401C	-	95	35.417	ENSMAMG00000015637	dus3l	86	36.667	Mastacembelus_armatus
YLR401C	-	97	36.350	ENSMZEG00005026661	dus3l	98	35.277	Maylandia_zebra
YLR401C	-	88	37.018	ENSMGAG00000001547	-	87	36.379	Meleagris_gallopavo
YLR401C	-	88	36.409	ENSMAUG00000008347	Dus3l	85	36.068	Mesocricetus_auratus
YLR401C	-	95	36.458	ENSMICG00000007097	DUS3L	83	38.071	Microcebus_murinus
YLR401C	-	88	36.842	ENSMOCG00000021796	Dus3l	85	36.239	Microtus_ochrogaster
YLR401C	-	93	36.089	ENSMMOG00000018377	dus3l	84	36.689	Mola_mola
YLR401C	-	88	36.246	ENSMODG00000001339	-	80	35.505	Monodelphis_domestica
YLR401C	-	87	35.846	ENSMALG00000007559	dus3l	81	35.640	Monopterus_albus
YLR401C	-	88	37.691	MGP_CAROLIEiJ_G0021789	Dus3l	85	37.094	Mus_caroli
YLR401C	-	88	37.521	ENSMUSG00000007603	Dus3l	85	36.923	Mus_musculus
YLR401C	-	88	38.200	MGP_PahariEiJ_G0020778	Dus3l	85	37.607	Mus_pahari
YLR401C	-	88	37.521	MGP_SPRETEiJ_G0022700	Dus3l	85	36.923	Mus_spretus
YLR401C	-	96	34.918	ENSMPUG00000006188	-	84	36.303	Mustela_putorius_furo
YLR401C	-	88	37.966	ENSMLUG00000007159	-	84	37.372	Myotis_lucifugus
YLR401C	-	88	37.755	ENSNGAG00000017157	Dus3l	84	37.158	Nannospalax_galili
YLR401C	-	97	33.634	ENSNBRG00000015011	dus3l	81	35.883	Neolamprologus_brichardi
YLR401C	-	93	38.376	ENSNLEG00000013734	DUS3L	86	44.000	Nomascus_leucogenys
YLR401C	-	78	38.593	ENSMEUG00000014401	-	98	38.023	Notamacropus_eugenii
YLR401C	-	50	43.443	ENSOPRG00000000954	DUS3L	51	43.443	Ochotona_princeps
YLR401C	-	95	36.061	ENSODEG00000015771	DUS3L	97	35.127	Octodon_degus
YLR401C	-	89	37.583	ENSONIG00000019793	dus3l	86	37.012	Oreochromis_niloticus
YLR401C	-	99	33.144	ENSOANG00000004386	-	99	31.876	Ornithorhynchus_anatinus
YLR401C	-	97	37.258	ENSORLG00000030245	dus3l	96	36.458	Oryzias_latipes
YLR401C	-	96	35.152	ENSOMEG00000023500	dus3l	84	36.177	Oryzias_melastigma
YLR401C	-	98	34.604	ENSOGAG00000016549	DUS3L	98	34.164	Otolemur_garnettii
YLR401C	-	88	31.419	ENSOARG00000007052	-	97	30.303	Ovis_aries
YLR401C	-	93	36.933	ENSPPAG00000038054	DUS3L	86	44.000	Pan_paniscus
YLR401C	-	96	36.148	ENSPPRG00000000633	-	93	40.097	Panthera_pardus
YLR401C	-	93	36.933	ENSPTRG00000010343	DUS3L	86	44.000	Pan_troglodytes
YLR401C	-	93	32.864	ENSPANG00000015039	DUS3L	85	41.053	Papio_anubis
YLR401C	-	89	36.711	ENSPKIG00000018035	dus3l	82	36.870	Paramormyrops_kingsleyae
YLR401C	-	88	37.340	ENSPSIG00000004965	-	94	36.791	Pelodiscus_sinensis
YLR401C	-	89	36.975	ENSPMGG00000021422	dus3l	79	37.234	Periophthalmus_magnuspinnatus
YLR401C	-	88	36.672	ENSPEMG00000020784	Dus3l	85	36.068	Peromyscus_maniculatus_bairdii
YLR401C	-	95	33.839	ENSPMAG00000007671	dus3l	84	35.103	Petromyzon_marinus
YLR401C	-	56	43.733	ENSPCIG00000008483	-	96	43.333	Phascolarctos_cinereus
YLR401C	-	93	36.693	ENSPFOG00000006750	dus3l	85	37.458	Poecilia_formosa
YLR401C	-	93	36.693	ENSPLAG00000011636	dus3l	85	37.458	Poecilia_latipinna
YLR401C	-	93	36.656	ENSPMEG00000011343	dus3l	84	37.436	Poecilia_mexicana
YLR401C	-	89	38.095	ENSPREG00000012315	dus3l	85	37.960	Poecilia_reticulata
YLR401C	-	93	35.535	ENSPPYG00000009435	DUS3L	89	35.535	Pongo_abelii
YLR401C	-	95	36.173	ENSPCOG00000026203	DUS3L	83	37.819	Propithecus_coquereli
YLR401C	-	65	42.809	ENSPVAG00000010503	-	56	42.466	Pteropus_vampyrus
YLR401C	-	97	35.863	ENSPNYG00000009052	dus3l	98	35.714	Pundamilia_nyererei
YLR401C	-	89	36.273	ENSPNAG00000022347	dus3l	85	36.149	Pygocentrus_nattereri
YLR401C	-	88	38.200	ENSRNOG00000050381	Dus3l	85	37.607	Rattus_norvegicus
YLR401C	-	93	32.376	ENSRBIG00000025322	DUS3L	83	35.467	Rhinopithecus_bieti
YLR401C	-	88	38.710	ENSRROG00000037008	DUS3L	86	44.000	Rhinopithecus_roxellana
YLR401C	-	95	34.985	ENSSBOG00000020402	DUS3L	86	43.467	Saimiri_boliviensis_boliviensis
YLR401C	-	88	38.514	ENSSHAG00000014156	-	83	37.755	Sarcophilus_harrisii
YLR401C	-	89	35.524	ENSSFOG00015008797	dus3l	85	35.247	Scleropages_formosus
YLR401C	-	89	36.617	ENSSMAG00000004896	dus3l	87	36.088	Scophthalmus_maximus
YLR401C	-	89	36.013	ENSSDUG00000013517	dus3l	87	35.593	Seriola_dumerili
YLR401C	-	89	35.607	ENSSLDG00000016115	dus3l	86	35.265	Seriola_lalandi_dorsalis
YLR401C	-	53	43.137	ENSSPUG00000011128	-	97	41.463	Sphenodon_punctatus
YLR401C	-	97	32.344	ENSSPAG00000018660	dus3l	85	34.683	Stegastes_partitus
YLR401C	-	93	37.202	ENSSSCG00000040968	-	83	37.819	Sus_scrofa
YLR401C	-	53	35.211	ENSTGUG00000014885	-	100	34.181	Taeniopygia_guttata
YLR401C	-	88	38.151	ENSTGUG00000001021	-	87	37.563	Taeniopygia_guttata
YLR401C	-	89	35.893	ENSTRUG00000013055	dus3l	85	35.544	Takifugu_rubripes
YLR401C	-	88	36.379	ENSTNIG00000017537	dus3l	87	35.209	Tetraodon_nigroviridis
YLR401C	-	96	36.103	ENSUAMG00000024269	-	99	37.303	Ursus_americanus
YLR401C	-	96	32.836	ENSUMAG00000010831	-	96	31.893	Ursus_maritimus
YLR401C	-	96	35.897	ENSVVUG00000013781	-	99	34.548	Vulpes_vulpes
YLR401C	-	89	39.268	ENSXETG00000027405	dus3l	83	38.842	Xenopus_tropicalis
YLR401C	-	57	44.855	ENSXCOG00000019852	dus3l	84	44.855	Xiphophorus_couchianus
YLR401C	-	89	37.767	ENSXMAG00000015252	dus3l	82	38.185	Xiphophorus_maculatus