EuRBPDB

Description

Ensembl ID: YLR438C-A (Gene tree)
Gene ID: -
Gene Symbol: LSM3
Alias: SMX4|USS2
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 270
Position: chrXII:1013909-1014178
Accession: S000006434
RBP type: canonical RBP
Summary: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA%3B protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR438C-A_mRNA	LSM	PF01423.22	6.8e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR438C-A_mRNA	-	270	-	YLR438C-A_mRNA	89 (aa)	-	P57743

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR438C-A	LSM3	92	33.721	YNL147W	-	74	33.721
YLR438C-A	LSM3	74	34.328	YLR275W	SMD2	61	34.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR438C-A	LSM3	89	43.529	ENSCJAG00000042664	-	83	43.529	Callithrix_jacchus