EuRBPDB

Description

Ensembl ID: YLR441C (Gene tree)
Gene ID: -
Gene Symbol: RPS1A
Alias: RP10A
Full Name: Ribosomal protein 10 (rp10) of the small (40S) subunit%3B homologous to mammalian ribosomal protein S3A%2C no bacterial homolog%3B RPS1A has a paralog%2C RPS1B%2C that arose from the whole genome duplication
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 768 bases
Position: chrXII:1018141-1018908
Accession: S000004433
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR441C_mRNA	Ribosomal_S3Ae	PF01015.18	5.7e-87	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR441C_mRNA	-	768	-	YLR441C_mRNA	255 (aa)	-	P33442

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR441C	RPS1A	100	96.863	YML063W	RPS1B	100	96.863

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR441C	RPS1A	73	57.979	ENSANAG00000034457	-	93	63.441	Aotus_nancymaae
YLR441C	RPS1A	72	57.838	ENSCAPG00000011956	-	92	59.459	Cavia_aperea
YLR441C	RPS1A	73	59.043	ENSCCAG00000032295	-	94	59.574	Cebus_capucinus
YLR441C	RPS1A	73	55.851	ENSCANG00000032048	-	94	57.979	Colobus_angolensis_palliatus
YLR441C	RPS1A	73	52.660	ENSGGOG00000028270	-	92	54.054	Gorilla_gorilla
YLR441C	RPS1A	73	57.447	ENSMMUG00000009272	-	97	63.441	Macaca_mulatta
YLR441C	RPS1A	73	55.080	ENSMNEG00000043648	-	89	56.684	Macaca_nemestrina
YLR441C	RPS1A	73	55.080	ENSMLEG00000034553	-	89	56.684	Mandrillus_leucophaeus
YLR441C	RPS1A	72	59.459	ENSODEG00000009407	-	92	61.081	Octodon_degus
YLR441C	RPS1A	73	58.511	ENSPPAG00000005749	-	94	60.106	Pan_paniscus
YLR441C	RPS1A	73	56.915	ENSPPAG00000034286	-	92	58.919	Pan_paniscus
YLR441C	RPS1A	92	60.256	ENSSLDG00000011590	-	94	60.256	Seriola_lalandi_dorsalis
YLR441C	RPS1A	74	58.947	ENSVVUG00000025107	-	95	60.526	Vulpes_vulpes