EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YML001W (Gene tree)
Gene ID: -
Gene Symbol: YPT7
Alias: AST4|VAM4
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 627
Position: chrXIII:267174-267800
Accession: S000004460
RBP type: canonical RBP
Summary: Rab family GTPase%3B GTP-binding protein of the rab family%3B required for homotypic fusion event in vacuole inheritance%2C for endosome-endosome fusion%3B localizes to sites of contact between the vacuole and mitochondria (vCLAMPs)%3B interacts with the cargo selection/retromer complex for retrograde sorting%3B similar to mammalian Rab7

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YML001W_mRNA	MMR_HSR1	PF01926.23	5.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YML001W_mRNA	-	627	-	YML001W_mRNA	208 (aa)	-	P32939

Gene Model

Click here to download YML001W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YML001W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YML001W	YPT7	96	34.928	YOR089C	VPS21	97	34.928
YML001W	YPT7	95	33.663	YNL093W	-	89	33.663
YML001W	YPT7	86	43.258	YFL005W	SEC4	78	43.503
YML001W	YPT7	96	31.884	YBR264C	-	98	31.884
YML001W	YPT7	79	32.984	YKR014C	-	80	32.984
YML001W	YPT7	83	36.571	YER031C	YPT31	74	36.571
YML001W	YPT7	82	36.628	YGL210W	-	74	36.628
YML001W	YPT7	96	36.842	YLR262C	-	95	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YML001W	YPT7	100	44.762	ENSACIG00000011024	si:dkey-13a21.4	100	44.762	Amphilophus_citrinellus
YML001W	YPT7	100	45.238	ENSAOCG00000020491	si:dkey-13a21.4	100	45.238	Amphiprion_ocellaris
YML001W	YPT7	100	45.238	ENSAPEG00000023338	si:dkey-13a21.4	92	45.238	Amphiprion_percula
YML001W	YPT7	100	45.238	ENSATEG00000014958	si:dkey-13a21.4	100	45.238	Anabas_testudineus
YML001W	YPT7	98	42.439	ENSACAG00000012345	-	99	42.439	Anolis_carolinensis
YML001W	YPT7	100	44.286	ENSACLG00000021109	si:dkey-13a21.4	99	44.286	Astatotilapia_calliptera
YML001W	YPT7	86	47.514	ENSAMXG00000032663	si:dkey-13a21.4	82	47.514	Astyanax_mexicanus
YML001W	YPT7	94	60.513	WBGene00004271	rab-7	99	57.895	Caenorhabditis_elegans
YML001W	YPT7	96	43.781	ENSCVAG00000001150	si:dkey-13a21.4	96	43.781	Cyprinodon_variegatus
YML001W	YPT7	82	51.765	ENSDARG00000026098	si:dkey-13a21.4	81	51.765	Danio_rerio
YML001W	YPT7	89	44.149	ENSDNOG00000043559	-	90	44.149	Dasypus_novemcinctus
YML001W	YPT7	96	44.279	ENSFHEG00000002502	si:dkey-13a21.4	95	44.279	Fundulus_heteroclitus
YML001W	YPT7	96	45.274	ENSGAFG00000020102	si:dkey-13a21.4	96	45.274	Gambusia_affinis
YML001W	YPT7	100	44.762	ENSHBUG00000014023	si:dkey-13a21.4	99	44.762	Haplochromis_burtoni
YML001W	YPT7	87	46.961	ENSKMAG00000021039	si:dkey-13a21.4	74	46.961	Kryptolebias_marmoratus
YML001W	YPT7	100	43.541	ENSLBEG00000018180	si:dkey-13a21.4	100	43.541	Labrus_bergylta
YML001W	YPT7	86	52.247	ENSLOCG00000014749	si:dkey-13a21.4	85	52.247	Lepisosteus_oculatus
YML001W	YPT7	100	43.333	ENSLAFG00000028984	-	100	43.333	Loxodonta_africana
YML001W	YPT7	100	45.714	ENSMAMG00000021095	si:dkey-13a21.4	100	45.714	Mastacembelus_armatus
YML001W	YPT7	100	44.286	ENSMZEG00005010220	si:dkey-13a21.4	99	44.286	Maylandia_zebra
YML001W	YPT7	96	45.771	ENSNBRG00000023214	si:dkey-13a21.4	95	45.771	Neolamprologus_brichardi
YML001W	YPT7	100	45.238	ENSONIG00000020296	si:dkey-13a21.4	100	45.238	Oreochromis_niloticus
YML001W	YPT7	85	47.159	ENSORLG00000025098	si:dkey-13a21.4	84	47.159	Oryzias_latipes
YML001W	YPT7	85	47.159	ENSORLG00020019465	si:dkey-13a21.4	84	47.159	Oryzias_latipes_hni
YML001W	YPT7	85	47.159	ENSORLG00015015121	si:dkey-13a21.4	84	47.159	Oryzias_latipes_hsok
YML001W	YPT7	88	50.000	ENSPKIG00000008691	si:dkey-13a21.4	88	50.000	Paramormyrops_kingsleyae
YML001W	YPT7	93	45.641	ENSPMGG00000023170	si:dkey-13a21.4	97	44.498	Periophthalmus_magnuspinnatus
YML001W	YPT7	96	43.781	ENSPFOG00000015409	si:dkey-13a21.4	96	43.781	Poecilia_formosa
YML001W	YPT7	96	43.781	ENSPLAG00000019688	si:dkey-13a21.4	96	43.781	Poecilia_latipinna
YML001W	YPT7	96	43.781	ENSPMEG00000019159	si:dkey-13a21.4	96	43.781	Poecilia_mexicana
YML001W	YPT7	96	42.786	ENSPREG00000022241	si:dkey-13a21.4	96	42.786	Poecilia_reticulata
YML001W	YPT7	100	44.286	ENSPNYG00000018613	si:dkey-13a21.4	99	44.286	Pundamilia_nyererei
YML001W	YPT7	89	50.270	ENSSFOG00015009566	si:dkey-13a21.4	89	50.270	Scleropages_formosus
YML001W	YPT7	96	46.269	ENSSMAG00000013945	si:dkey-13a21.4	95	46.269	Scophthalmus_maximus
YML001W	YPT7	100	46.190	ENSSDUG00000019738	si:dkey-13a21.4	100	46.190	Seriola_dumerili
YML001W	YPT7	100	46.667	ENSSLDG00000011597	si:dkey-13a21.4	100	46.667	Seriola_lalandi_dorsalis
YML001W	YPT7	100	47.115	ENSXETG00000014257	mgc75872	100	47.115	Xenopus_tropicalis