EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YML049C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Protein involved in pre-mRNA splicing%3B component of the pre-spliceosome%3B associates with U2 snRNA%3B involved in ER to Golgi transport
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 4086 bases
Position: chrXIII:174220-178305
Accession: S000004513
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YML049C_mRNA	CPSF_A	PF03178.15	1e-45	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YML049C_mRNA	-	4086	-	YML049C_mRNA	1361 (aa)	-	Q04693

Gene Model

Click here to download YML049C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YML049C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YML049C	-	75	41.935	ENSACIG00000016487	sf3b3	81	41.935	Amphilophus_citrinellus
YML049C	-	75	41.935	ENSACLG00000022555	sf3b3	81	41.935	Astatotilapia_calliptera
YML049C	-	75	41.935	ENSCJAG00000014773	SF3B3	92	41.935	Callithrix_jacchus
YML049C	-	85	46.154	ENSCSAVG00000011454	-	95	46.154	Ciona_savignyi
YML049C	-	84	41.935	ENSCANG00000042920	SF3B3	94	41.935	Colobus_angolensis_palliatus
YML049C	-	52	40.323	ENSETEG00000002729	SF3B3	58	40.323	Echinops_telfairi
YML049C	-	68	41.935	ENSHBUG00000005960	sf3b3	80	41.935	Haplochromis_burtoni
YML049C	-	75	41.935	ENSHCOG00000011981	sf3b3	76	41.935	Hippocampus_comes
YML049C	-	73	41.935	ENSMZEG00005026015	sf3b3	80	41.935	Maylandia_zebra
YML049C	-	75	41.935	ENSMZEG00005010836	sf3b3	81	41.935	Maylandia_zebra
YML049C	-	73	41.935	ENSMMOG00000002598	sf3b3	76	41.935	Mola_mola
YML049C	-	64	41.935	ENSNBRG00000007197	sf3b3	68	41.935	Neolamprologus_brichardi
YML049C	-	75	43.548	ENSORLG00000013472	sf3b3	81	43.548	Oryzias_latipes
YML049C	-	75	43.548	ENSORLG00020017473	sf3b3	81	43.548	Oryzias_latipes_hni
YML049C	-	75	43.548	ENSORLG00015007710	sf3b3	81	43.548	Oryzias_latipes_hsok
YML049C	-	73	41.935	ENSPTIG00000020382	SF3B3	93	41.935	Panthera_tigris_altaica
YML049C	-	75	40.323	ENSPKIG00000002712	sf3b3	78	40.323	Paramormyrops_kingsleyae
YML049C	-	67	41.935	ENSPCAG00000002623	SF3B3	67	41.935	Procavia_capensis
YML049C	-	84	41.935	ENSPVAG00000000684	SF3B3	92	41.935	Pteropus_vampyrus
YML049C	-	75	41.935	ENSPNYG00000003528	sf3b3	81	41.935	Pundamilia_nyererei
YML049C	-	75	41.935	ENSSFOG00015012877	sf3b3	82	41.935	Scleropages_formosus
YML049C	-	75	41.935	ENSSSCG00000025323	SF3B3	92	41.935	Sus_scrofa
YML049C	-	84	41.935	ENSUMAG00000017757	SF3B3	96	41.935	Ursus_maritimus