EuRBPDB

Description

Ensembl ID: YML063W (Gene tree)
Gene ID: -
Gene Symbol: RPS1B
Alias: PLC2|RP10B
Full Name: Ribosomal protein 10 (rp10) of the small (40S) subunit%3B homologous to mammalian ribosomal protein S3A%2C no bacterial homolog%3B RPS1B has a paralog%2C RPS1A%2C that arose from the whole genome duplication
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 768 bases
Position: chrXIII:146482-147249
Accession: S000004528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YML063W_mRNA	Ribosomal_S3Ae	PF01015.18	4.5e-87	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YML063W_mRNA	-	768	-	YML063W_mRNA	255 (aa)	-	P23248

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YML063W	RPS1B	100	96.863	YLR441C	RPS1A	100	96.863

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YML063W	RPS1B	73	58.511	ENSANAG00000034457	-	93	59.140	Aotus_nancymaae
YML063W	RPS1B	72	58.378	ENSCAPG00000011956	-	92	58.919	Cavia_aperea
YML063W	RPS1B	73	60.106	ENSCCAG00000032295	-	94	59.043	Cebus_capucinus
YML063W	RPS1B	73	56.383	ENSCANG00000032048	-	94	57.447	Colobus_angolensis_palliatus
YML063W	RPS1B	73	53.723	ENSGGOG00000028270	-	92	53.514	Gorilla_gorilla
YML063W	RPS1B	73	57.979	ENSMMUG00000009272	-	97	59.140	Macaca_mulatta
YML063W	RPS1B	73	55.615	ENSMNEG00000043648	-	89	56.150	Macaca_nemestrina
YML063W	RPS1B	73	55.615	ENSMLEG00000034553	-	89	56.150	Mandrillus_leucophaeus
YML063W	RPS1B	72	60.000	ENSODEG00000009407	-	92	60.541	Octodon_degus
YML063W	RPS1B	73	59.043	ENSPPAG00000005749	-	94	59.574	Pan_paniscus
YML063W	RPS1B	73	57.447	ENSPPAG00000034286	-	92	58.378	Pan_paniscus
YML063W	RPS1B	92	60.256	ENSSLDG00000011590	-	94	60.256	Seriola_lalandi_dorsalis
YML063W	RPS1B	74	59.474	ENSVVUG00000025107	-	95	60.000	Vulpes_vulpes