EuRBPDB

Description

Ensembl ID: YMR012W (Gene tree)
Gene ID: -
Gene Symbol: CLU1
Alias: TIF31
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3834
Position: chrXIII:291134-294967
Accession: S000004614
RBP type: canonical RBP
Summary: Subunit of the eukaryotic translation initiation factor 3 (eIF3)%3B component of unknown function%3B deletion causes defects in mitochondrial organization but not in growth or translation initiation%3B can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant%3B eIF3 is also involved in programmed stop codon readthrough

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR012W_mRNA	eIF3_p135	PF12807.7	6.7e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR012W_mRNA	-	3834	-	YMR012W_mRNA	1277 (aa)	-	Q03690

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR012W	CLU1	69	37.037	ENSCSAVG00000000305	-	95	30.189	Ciona_savignyi
YMR012W	CLU1	73	34.524	FBgn0034087	clu	70	34.524	Drosophila_melanogaster
YMR012W	CLU1	54	30.070	ENSEBUG00000011360	cluha	67	30.070	Eptatretus_burgeri
YMR012W	CLU1	51	31.225	ENSEEUG00000001750	CLUH	69	30.952	Erinaceus_europaeus
YMR012W	CLU1	85	38.272	ENSLACG00000018238	CLUH	76	38.272	Latimeria_chalumnae
YMR012W	CLU1	50	38.272	ENSXETG00000019399	cluh	76	38.272	Xenopus_tropicalis