EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YMR049C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Constituent of 66S pre-ribosomal particles%3B forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit%3B required for maturation of the 25S and 5.8S ribosomal RNAs%3B homologous to mammalian Bop1
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2424 bases
Position: chrXIII:368094-370517
Accession: S000004652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR049C_mRNA	BOP1NT	PF08145.12	1.7e-104	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR049C_mRNA	-	2424	-	YMR049C_mRNA	807 (aa)	-	Q04660

Gene Model

Click here to download YMR049C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR049C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR049C	-	82	41.018	ENSG00000261236	BOP1	84	41.018	Homo_sapiens
YMR049C	-	82	41.617	ENSAPOG00000019208	bop1	94	41.592	Acanthochromis_polyacanthus
YMR049C	-	82	39.671	ENSAMEG00000005886	BOP1	88	39.671	Ailuropoda_melanoleuca
YMR049C	-	81	41.123	ENSACIG00000007313	bop1	88	40.752	Amphilophus_citrinellus
YMR049C	-	82	40.868	ENSAOCG00000016222	bop1	84	40.868	Amphiprion_ocellaris
YMR049C	-	82	41.018	ENSAPEG00000018843	bop1	84	41.018	Amphiprion_percula
YMR049C	-	82	41.916	ENSATEG00000010331	bop1	90	40.364	Anabas_testudineus
YMR049C	-	58	52.174	ENSAPLG00000008324	BOP1	84	52.174	Anas_platyrhynchos
YMR049C	-	82	40.419	ENSANAG00000035474	BOP1	84	40.419	Aotus_nancymaae
YMR049C	-	82	40.120	ENSACLG00000005923	bop1	97	40.120	Astatotilapia_calliptera
YMR049C	-	78	38.272	ENSAMXG00000011549	bop1	93	37.963	Astyanax_mexicanus
YMR049C	-	82	41.317	ENSBTAG00000009811	BOP1	83	41.317	Bos_taurus
YMR049C	-	83	39.680	WBGene00012978	Y48B6A.1	94	39.327	Caenorhabditis_elegans
YMR049C	-	77	39.457	ENSCJAG00000021437	BOP1	74	39.457	Callithrix_jacchus
YMR049C	-	82	39.222	ENSCAFG00000001554	BOP1	84	39.072	Canis_familiaris
YMR049C	-	82	38.772	ENSCHIG00000013489	BOP1	84	38.772	Capra_hircus
YMR049C	-	82	41.317	ENSTSYG00000035588	BOP1	85	41.317	Carlito_syrichta
YMR049C	-	81	41.578	ENSCAPG00000005636	BOP1	96	41.578	Cavia_aperea
YMR049C	-	82	41.467	ENSCPOG00000005456	BOP1	85	41.467	Cavia_porcellus
YMR049C	-	82	41.018	ENSCCAG00000028318	BOP1	84	41.018	Cebus_capucinus
YMR049C	-	82	40.569	ENSCATG00000032450	BOP1	84	40.569	Cercocebus_atys
YMR049C	-	82	41.317	ENSCLAG00000010297	BOP1	85	41.317	Chinchilla_lanigera
YMR049C	-	82	40.868	ENSCSAG00000008653	BOP1	84	40.868	Chlorocebus_sabaeus
YMR049C	-	82	44.311	ENSCPBG00000018884	BOP1	85	44.311	Chrysemys_picta_bellii
YMR049C	-	82	43.091	ENSCING00000006069	-	87	42.899	Ciona_intestinalis
YMR049C	-	82	43.070	ENSCSAVG00000006653	-	100	43.091	Ciona_savignyi
YMR049C	-	82	40.569	ENSCANG00000038730	BOP1	85	40.569	Colobus_angolensis_palliatus
YMR049C	-	81	41.400	ENSCGRG00001022601	BOP1	85	41.617	Cricetulus_griseus_chok1gshd
YMR049C	-	81	41.400	ENSCGRG00000012159	Bop1	86	41.617	Cricetulus_griseus_crigri
YMR049C	-	81	41.275	ENSCSEG00000018121	bop1	89	41.275	Cynoglossus_semilaevis
YMR049C	-	82	41.467	ENSCVAG00000023063	bop1	82	41.317	Cyprinodon_variegatus
YMR049C	-	82	42.003	ENSDARG00000063627	bop1	92	38.411	Danio_rerio
YMR049C	-	81	41.426	ENSDNOG00000047347	BOP1	82	40.971	Dasypus_novemcinctus
YMR049C	-	84	40.147	ENSDORG00000004860	Bop1	92	40.294	Dipodomys_ordii
YMR049C	-	83	43.088	FBgn0028744	CG5033	82	43.088	Drosophila_melanogaster
YMR049C	-	81	41.123	ENSEBUG00000003348	bop1	96	40.971	Eptatretus_burgeri
YMR049C	-	95	39.226	ENSEASG00005010217	BOP1	84	41.916	Equus_asinus_asinus
YMR049C	-	95	39.226	ENSECAG00000016440	BOP1	76	41.916	Equus_caballus
YMR049C	-	68	38.768	ENSEEUG00000005437	BOP1	96	38.768	Erinaceus_europaeus
YMR049C	-	82	43.049	ENSELUG00000022099	bop1	79	42.451	Esox_lucius
YMR049C	-	87	40.449	ENSFCAG00000022942	BOP1	89	40.449	Felis_catus
YMR049C	-	74	41.625	ENSFALG00000000360	BOP1	99	41.625	Ficedula_albicollis
YMR049C	-	82	40.719	ENSFDAG00000015755	BOP1	89	40.719	Fukomys_damarensis
YMR049C	-	70	40.598	ENSFHEG00000017233	bop1	99	38.644	Fundulus_heteroclitus
YMR049C	-	81	39.939	ENSGMOG00000000569	bop1	100	39.486	Gadus_morhua
YMR049C	-	82	44.361	ENSGALG00000053353	BOP1	88	44.162	Gallus_gallus
YMR049C	-	82	40.419	ENSGAFG00000011248	bop1	87	40.212	Gambusia_affinis
YMR049C	-	89	40.000	ENSGACG00000010420	bop1	94	41.555	Gasterosteus_aculeatus
YMR049C	-	92	41.480	ENSGAGG00000012770	BOP1	85	44.461	Gopherus_agassizii
YMR049C	-	82	41.018	ENSGGOG00000013590	BOP1	88	41.018	Gorilla_gorilla
YMR049C	-	82	40.269	ENSHBUG00000013186	bop1	87	40.269	Haplochromis_burtoni
YMR049C	-	82	41.018	ENSHGLG00000017934	BOP1	85	41.018	Heterocephalus_glaber_female
YMR049C	-	82	41.018	ENSHGLG00100007897	BOP1	92	40.957	Heterocephalus_glaber_male
YMR049C	-	82	41.617	ENSHCOG00000018713	bop1	85	41.617	Hippocampus_comes
YMR049C	-	99	38.855	ENSIPUG00000012277	bop1	81	42.601	Ictalurus_punctatus
YMR049C	-	96	37.580	ENSSTOG00000020925	BOP1	84	40.719	Ictidomys_tridecemlineatus
YMR049C	-	81	41.553	ENSJJAG00000003954	Bop1	88	41.617	Jaculus_jaculus
YMR049C	-	82	42.066	ENSKMAG00000001743	bop1	93	41.717	Kryptolebias_marmoratus
YMR049C	-	82	40.419	ENSLBEG00000022444	bop1	83	40.419	Labrus_bergylta
YMR049C	-	91	37.652	ENSLBEG00000023751	-	83	40.419	Labrus_bergylta
YMR049C	-	82	42.964	ENSLACG00000013738	BOP1	82	42.814	Latimeria_chalumnae
YMR049C	-	81	43.399	ENSLOCG00000007429	bop1	100	42.944	Lepisosteus_oculatus
YMR049C	-	82	38.074	ENSLAFG00000000686	BOP1	91	38.657	Loxodonta_africana
YMR049C	-	82	40.569	ENSMFAG00000031321	BOP1	87	40.569	Macaca_fascicularis
YMR049C	-	82	40.569	ENSMMUG00000014724	BOP1	84	40.569	Macaca_mulatta
YMR049C	-	82	34.685	ENSMNEG00000040269	BOP1	82	32.432	Macaca_nemestrina
YMR049C	-	82	40.569	ENSMLEG00000039202	BOP1	88	40.569	Mandrillus_leucophaeus
YMR049C	-	82	41.168	ENSMAMG00000022191	bop1	87	40.971	Mastacembelus_armatus
YMR049C	-	82	40.269	ENSMZEG00005011990	bop1	88	40.269	Maylandia_zebra
YMR049C	-	79	39.969	ENSMAUG00000012534	Bop1	86	39.969	Mesocricetus_auratus
YMR049C	-	82	40.569	ENSMICG00000015653	BOP1	85	40.269	Microcebus_murinus
YMR049C	-	81	42.314	ENSMOCG00000011668	Bop1	86	42.365	Microtus_ochrogaster
YMR049C	-	81	40.364	ENSMMOG00000017547	bop1	88	40.516	Mola_mola
YMR049C	-	82	42.066	ENSMODG00000010589	BOP1	79	41.496	Monodelphis_domestica
YMR049C	-	82	41.467	ENSMALG00000011552	bop1	82	41.317	Monopterus_albus
YMR049C	-	81	41.400	MGP_CAROLIEiJ_G0019928	Bop1	85	40.868	Mus_caroli
YMR049C	-	81	41.400	ENSMUSG00000022557	Bop1	85	40.868	Mus_musculus
YMR049C	-	81	41.096	MGP_PahariEiJ_G0019938	Bop1	85	41.168	Mus_pahari
YMR049C	-	81	41.248	MGP_SPRETEiJ_G0020831	Bop1	97	48.837	Mus_spretus
YMR049C	-	94	37.908	ENSMPUG00000006831	BOP1	86	40.569	Mustela_putorius_furo
YMR049C	-	82	41.766	ENSMLUG00000030120	BOP1	88	41.766	Myotis_lucifugus
YMR049C	-	81	41.426	ENSNGAG00000009053	Bop1	98	41.426	Nannospalax_galili
YMR049C	-	81	39.334	ENSNBRG00000021004	bop1	88	39.334	Neolamprologus_brichardi
YMR049C	-	81	42.185	ENSMEUG00000000450	BOP1	82	41.882	Notamacropus_eugenii
YMR049C	-	93	38.441	ENSODEG00000013361	BOP1	95	38.278	Octodon_degus
YMR049C	-	82	40.419	ENSONIG00000015336	bop1	87	40.269	Oreochromis_niloticus
YMR049C	-	82	42.665	ENSORLG00000001674	bop1	84	42.365	Oryzias_latipes
YMR049C	-	82	42.365	ENSORLG00020010315	bop1	84	42.066	Oryzias_latipes_hni
YMR049C	-	82	42.665	ENSORLG00015017381	bop1	84	42.365	Oryzias_latipes_hsok
YMR049C	-	82	42.365	ENSOMEG00000009341	bop1	85	42.216	Oryzias_melastigma
YMR049C	-	82	40.868	ENSOGAG00000017175	BOP1	86	40.868	Otolemur_garnettii
YMR049C	-	71	42.609	ENSOARG00000014255	BOP1	76	42.609	Ovis_aries
YMR049C	-	82	41.018	ENSPPAG00000043028	BOP1	88	41.018	Pan_paniscus
YMR049C	-	67	46.186	ENSPPRG00000008442	BOP1	80	46.186	Panthera_pardus
YMR049C	-	82	40.868	ENSPTRG00000020690	BOP1	84	40.868	Pan_troglodytes
YMR049C	-	82	40.719	ENSPANG00000024950	BOP1	84	40.719	Papio_anubis
YMR049C	-	82	43.563	ENSPKIG00000020273	bop1	74	43.263	Paramormyrops_kingsleyae
YMR049C	-	91	39.733	ENSPMGG00000023998	bop1	92	40.889	Periophthalmus_magnuspinnatus
YMR049C	-	81	43.399	ENSPMAG00000004108	bop1	99	43.096	Petromyzon_marinus
YMR049C	-	82	42.964	ENSPCIG00000009070	BOP1	90	41.806	Phascolarctos_cinereus
YMR049C	-	82	40.868	ENSPFOG00000007988	bop1	86	40.379	Poecilia_formosa
YMR049C	-	81	40.516	ENSPLAG00000006820	bop1	85	40.516	Poecilia_latipinna
YMR049C	-	81	40.668	ENSPMEG00000015671	bop1	83	40.668	Poecilia_mexicana
YMR049C	-	82	41.168	ENSPREG00000015440	bop1	86	40.379	Poecilia_reticulata
YMR049C	-	74	40.630	ENSPPYG00000029621	-	98	40.630	Pongo_abelii
YMR049C	-	82	40.868	ENSPCAG00000006873	BOP1	84	40.868	Procavia_capensis
YMR049C	-	83	39.882	ENSPCOG00000023196	BOP1	86	39.882	Propithecus_coquereli
YMR049C	-	81	40.000	ENSPNYG00000010914	bop1	94	39.354	Pundamilia_nyererei
YMR049C	-	82	42.900	ENSPNAG00000008525	bop1	78	42.302	Pygocentrus_nattereri
YMR049C	-	81	41.705	ENSRNOG00000021773	Bop1	85	41.617	Rattus_norvegicus
YMR049C	-	82	40.269	ENSRBIG00000027555	BOP1	84	40.269	Rhinopithecus_bieti
YMR049C	-	82	37.143	ENSRROG00000043244	BOP1	89	36.795	Rhinopithecus_roxellana
YMR049C	-	82	40.868	ENSSBOG00000030140	BOP1	82	40.868	Saimiri_boliviensis_boliviensis
YMR049C	-	81	42.489	ENSSHAG00000000887	BOP1	99	42.489	Sarcophilus_harrisii
YMR049C	-	82	42.342	ENSSFOG00015010596	bop1	95	42.640	Scleropages_formosus
YMR049C	-	82	41.654	ENSSMAG00000014623	bop1	83	41.617	Scophthalmus_maximus
YMR049C	-	81	42.009	ENSSDUG00000021097	bop1	93	41.892	Seriola_dumerili
YMR049C	-	82	41.955	ENSSLDG00000001209	bop1	94	41.592	Seriola_lalandi_dorsalis
YMR049C	-	83	40.976	ENSSPUG00000017700	BOP1	95	40.828	Sphenodon_punctatus
YMR049C	-	82	40.121	ENSSPAG00000013925	bop1	92	40.061	Stegastes_partitus
YMR049C	-	82	41.168	ENSSSCG00000005920	BOP1	96	41.317	Sus_scrofa
YMR049C	-	82	42.216	ENSTNIG00000018156	bop1	91	42.176	Tetraodon_nigroviridis
YMR049C	-	74	49.123	ENSTTRG00000006423	BOP1	80	49.123	Tursiops_truncatus
YMR049C	-	85	40.435	ENSVVUG00000007851	BOP1	94	40.290	Vulpes_vulpes
YMR049C	-	81	39.334	ENSXCOG00000019431	bop1	88	39.334	Xiphophorus_couchianus