EuRBPDB

Description

Ensembl ID: YMR061W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2034
Position: chrXIII:392755-394788
Accession: S000004665
RBP type: canonical RBP
Summary: Component of the cleavage and polyadenylation factor I (CF I)%3B CF 1%2C composed of the CF 1A complex (Rna14p%2C Rna15p%2C Clp1p%2C Pcf11p) and Hrp1%2C is involved in cleavage and polyadenylation of mRNA 3' ends%3B bridges interaction between Rna15p and Hrp1p in the CF I complex%3B mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay%3B required for gene looping and maintenance of genome stability%3B relocalizes to the cytosol in response to hypoxia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR061W_mRNA	Suf	PF05843.14	6.8e-70	1	2
YMR061W_mRNA	Suf	PF05843.14	6.8e-70	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR061W_mRNA	-	2034	-	YMR061W_mRNA	677 (aa)	-	P25298

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR061W	-	68	35.664	ENSEEUG00000015167	CSTF3	62	35.664	Erinaceus_europaeus