EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YMR080C (Gene tree)
Gene ID: -
Gene Symbol: NAM7
Alias: IFS2|MOF4|SUP113|UPF1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2916
Position: chrXIII:426712-429627
Accession: S000004685
RBP type: canonical RBP
Summary: ATP-dependent RNA helicase of the SFI superfamily%3B involved in nonsense mediated mRNA decay%3B required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies%3B binds to the small ribosomal subunit via an interaction with Rps26%3B forms cytoplasmic foci upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR080C_mRNA	UPF1_Zn_bind	PF09416.10	1.1e-64	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR080C_mRNA	-	2916	-	YMR080C_mRNA	971 (aa)	-	P30771

Gene Model

Click here to download YMR080C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR080C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR080C	NAM7	86	55.962	ENSG00000005007	UPF1	76	55.309	Homo_sapiens
YMR080C	NAM7	84	56.916	ENSAPOG00000023773	upf1	75	56.569	Acanthochromis_polyacanthus
YMR080C	NAM7	87	55.778	ENSAPOG00000010916	-	76	55.778	Acanthochromis_polyacanthus
YMR080C	NAM7	84	56.348	ENSAMEG00000011474	UPF1	75	55.012	Ailuropoda_melanoleuca
YMR080C	NAM7	84	56.916	ENSACIG00000019949	upf1	73	57.697	Amphilophus_citrinellus
YMR080C	NAM7	84	57.160	ENSACIG00000010985	-	79	57.160	Amphilophus_citrinellus
YMR080C	NAM7	82	57.822	ENSAOCG00000006352	-	77	56.821	Amphiprion_ocellaris
YMR080C	NAM7	84	56.916	ENSAOCG00000018519	upf1	73	56.716	Amphiprion_ocellaris
YMR080C	NAM7	84	56.916	ENSAPEG00000016344	upf1	73	56.716	Amphiprion_percula
YMR080C	NAM7	82	57.822	ENSAPEG00000006292	-	77	56.821	Amphiprion_percula
YMR080C	NAM7	87	55.778	ENSATEG00000016606	-	76	55.778	Anabas_testudineus
YMR080C	NAM7	84	56.916	ENSATEG00000017867	upf1	71	57.697	Anabas_testudineus
YMR080C	NAM7	87	55.128	ENSAPLG00000009175	UPF1	80	55.128	Anas_platyrhynchos
YMR080C	NAM7	84	55.381	ENSANAG00000024107	UPF1	74	55.381	Aotus_nancymaae
YMR080C	NAM7	84	56.916	ENSACLG00000007181	upf1	73	57.697	Astatotilapia_calliptera
YMR080C	NAM7	82	57.947	ENSACLG00000022630	-	72	57.947	Astatotilapia_calliptera
YMR080C	NAM7	84	56.916	ENSAMXG00000042187	upf1	73	57.697	Astyanax_mexicanus
YMR080C	NAM7	82	57.108	ENSBTAG00000020922	UPF1	72	57.108	Bos_taurus
YMR080C	NAM7	86	48.329	WBGene00004880	smg-2	77	48.329	Caenorhabditis_elegans
YMR080C	NAM7	86	55.309	ENSCJAG00000019627	UPF1	76	55.309	Callithrix_jacchus
YMR080C	NAM7	82	57.108	ENSCAFG00000014578	UPF1	75	55.012	Canis_familiaris
YMR080C	NAM7	82	57.822	ENSCAFG00020012347	UPF1	71	57.822	Canis_lupus_dingo
YMR080C	NAM7	82	57.822	ENSCHIG00000011018	UPF1	72	57.108	Capra_hircus
YMR080C	NAM7	84	56.348	ENSTSYG00000008877	UPF1	81	54.587	Carlito_syrichta
YMR080C	NAM7	86	55.491	ENSCAPG00000005758	UPF1	77	55.491	Cavia_aperea
YMR080C	NAM7	82	57.231	ENSCPOG00000025463	UPF1	73	57.231	Cavia_porcellus
YMR080C	NAM7	86	55.962	ENSCCAG00000032175	UPF1	76	55.309	Cebus_capucinus
YMR080C	NAM7	84	56.348	ENSCATG00000040306	UPF1	77	56.348	Cercocebus_atys
YMR080C	NAM7	84	56.348	ENSCLAG00000004037	UPF1	78	56.348	Chinchilla_lanigera
YMR080C	NAM7	86	55.962	ENSCSAG00000005276	UPF1	75	55.962	Chlorocebus_sabaeus
YMR080C	NAM7	87	55.699	ENSCPBG00000012513	UPF1	75	55.699	Chrysemys_picta_bellii
YMR080C	NAM7	79	57.069	ENSCING00000021399	-	97	55.049	Ciona_intestinalis
YMR080C	NAM7	80	56.483	ENSCSAVG00000006533	-	71	56.538	Ciona_savignyi
YMR080C	NAM7	84	56.348	ENSCANG00000029819	UPF1	76	56.348	Colobus_angolensis_palliatus
YMR080C	NAM7	86	55.962	ENSCGRG00001021067	Upf1	77	55.322	Cricetulus_griseus_chok1gshd
YMR080C	NAM7	87	54.988	ENSCGRG00000013480	Upf1	80	54.988	Cricetulus_griseus_crigri
YMR080C	NAM7	84	53.715	ENSCSEG00000017239	upf1	75	53.715	Cynoglossus_semilaevis
YMR080C	NAM7	82	57.947	ENSCSEG00000016159	-	73	57.947	Cynoglossus_semilaevis
YMR080C	NAM7	82	57.822	ENSCVAG00000010561	upf1	72	57.822	Cyprinodon_variegatus
YMR080C	NAM7	84	56.916	ENSDARG00000016302	upf1	73	57.697	Danio_rerio
YMR080C	NAM7	88	54.296	ENSDORG00000009984	Upf1	78	54.296	Dipodomys_ordii
YMR080C	NAM7	83	54.969	FBgn0030354	Upf1	73	52.583	Drosophila_melanogaster
YMR080C	NAM7	55	50.933	ENSEBUG00000010069	upf1	87	50.933	Eptatretus_burgeri
YMR080C	NAM7	82	57.822	ENSEASG00005006549	UPF1	71	57.822	Equus_asinus_asinus
YMR080C	NAM7	82	57.822	ENSECAG00000010639	UPF1	71	57.822	Equus_caballus
YMR080C	NAM7	84	56.548	ENSELUG00000020917	upf1	80	56.548	Esox_lucius
YMR080C	NAM7	82	57.090	ENSELUG00000012916	-	73	57.090	Esox_lucius
YMR080C	NAM7	87	55.128	ENSFCAG00000009757	UPF1	75	55.128	Felis_catus
YMR080C	NAM7	87	55.713	ENSFALG00000009312	UPF1	77	55.713	Ficedula_albicollis
YMR080C	NAM7	88	54.670	ENSFDAG00000014816	UPF1	81	54.670	Fukomys_damarensis
YMR080C	NAM7	77	62.899	ENSFHEG00000016276	-	74	62.899	Fundulus_heteroclitus
YMR080C	NAM7	84	57.038	ENSFHEG00000006428	upf1	77	57.038	Fundulus_heteroclitus
YMR080C	NAM7	82	56.667	ENSGMOG00000007541	upf1	73	56.667	Gadus_morhua
YMR080C	NAM7	87	55.778	ENSGALG00000003220	UPF1	75	55.778	Gallus_gallus
YMR080C	NAM7	67	57.099	ENSGAFG00000015443	-	80	57.099	Gambusia_affinis
YMR080C	NAM7	84	57.038	ENSGAFG00000004831	upf1	73	57.822	Gambusia_affinis
YMR080C	NAM7	87	55.778	ENSGAGG00000022217	UPF1	75	55.778	Gopherus_agassizii
YMR080C	NAM7	84	57.038	ENSGGOG00000002608	UPF1	77	57.038	Gorilla_gorilla
YMR080C	NAM7	85	50.120	ENSHBUG00000014694	upf1	84	50.120	Haplochromis_burtoni
YMR080C	NAM7	87	55.962	ENSHBUG00000008939	upf1	83	55.962	Haplochromis_burtoni
YMR080C	NAM7	86	55.309	ENSHGLG00000010900	UPF1	76	55.309	Heterocephalus_glaber_female
YMR080C	NAM7	82	56.119	ENSHGLG00100005904	UPF1	74	56.119	Heterocephalus_glaber_male
YMR080C	NAM7	84	57.160	ENSHCOG00000008918	upf1	79	56.744	Hippocampus_comes
YMR080C	NAM7	84	56.916	ENSIPUG00000005108	UPF1	73	57.697	Ictalurus_punctatus
YMR080C	NAM7	86	55.962	ENSSTOG00000009196	UPF1	76	55.309	Ictidomys_tridecemlineatus
YMR080C	NAM7	86	55.309	ENSJJAG00000023151	Upf1	76	55.309	Jaculus_jaculus
YMR080C	NAM7	82	57.822	ENSKMAG00000004962	upf1	72	57.822	Kryptolebias_marmoratus
YMR080C	NAM7	82	57.572	ENSLBEG00000014862	upf1	72	57.572	Labrus_bergylta
YMR080C	NAM7	87	55.792	ENSLBEG00000027848	-	76	55.792	Labrus_bergylta
YMR080C	NAM7	51	62.020	ENSLACG00000008482	UPF1	71	62.020	Latimeria_chalumnae
YMR080C	NAM7	84	56.916	ENSLOCG00000002072	upf1	74	56.916	Lepisosteus_oculatus
YMR080C	NAM7	82	57.108	ENSLAFG00000014963	UPF1	75	55.012	Loxodonta_africana
YMR080C	NAM7	86	55.309	ENSMFAG00000037748	UPF1	76	55.309	Macaca_fascicularis
YMR080C	NAM7	86	55.309	ENSMMUG00000023286	UPF1	76	55.309	Macaca_mulatta
YMR080C	NAM7	86	55.309	ENSMNEG00000000046	UPF1	76	55.309	Macaca_nemestrina
YMR080C	NAM7	84	56.348	ENSMLEG00000028404	UPF1	78	56.348	Mandrillus_leucophaeus
YMR080C	NAM7	84	56.916	ENSMAMG00000006229	upf1	73	56.916	Mastacembelus_armatus
YMR080C	NAM7	84	57.038	ENSMAMG00000006231	-	74	57.038	Mastacembelus_armatus
YMR080C	NAM7	84	56.916	ENSMZEG00005003489	upf1	72	57.697	Maylandia_zebra
YMR080C	NAM7	82	57.947	ENSMZEG00005016386	-	72	57.947	Maylandia_zebra
YMR080C	NAM7	87	54.715	ENSMGAG00000004745	UPF1	80	54.715	Meleagris_gallopavo
YMR080C	NAM7	87	55.012	ENSMAUG00000011398	Upf1	76	55.012	Mesocricetus_auratus
YMR080C	NAM7	90	53.880	ENSMICG00000001659	UPF1	80	53.880	Microcebus_murinus
YMR080C	NAM7	86	55.309	ENSMOCG00000005699	Upf1	76	55.309	Microtus_ochrogaster
YMR080C	NAM7	83	56.473	ENSMMOG00000007537	-	78	56.473	Mola_mola
YMR080C	NAM7	84	56.793	ENSMMOG00000007881	upf1	79	54.954	Mola_mola
YMR080C	NAM7	88	55.478	ENSMODG00000003689	UPF1	77	55.478	Monodelphis_domestica
YMR080C	NAM7	87	55.437	ENSMALG00000018100	-	75	55.437	Monopterus_albus
YMR080C	NAM7	84	56.916	ENSMALG00000000144	upf1	74	57.697	Monopterus_albus
YMR080C	NAM7	86	55.962	MGP_CAROLIEiJ_G0031142	Upf1	76	55.962	Mus_caroli
YMR080C	NAM7	86	55.962	ENSMUSG00000058301	Upf1	76	55.962	Mus_musculus
YMR080C	NAM7	86	55.962	MGP_PahariEiJ_G0021607	Upf1	76	55.962	Mus_pahari
YMR080C	NAM7	86	55.962	MGP_SPRETEiJ_G0032260	Upf1	76	55.962	Mus_spretus
YMR080C	NAM7	82	57.822	ENSMPUG00000015516	UPF1	71	57.822	Mustela_putorius_furo
YMR080C	NAM7	82	57.822	ENSMLUG00000012122	UPF1	71	57.822	Myotis_lucifugus
YMR080C	NAM7	86	55.309	ENSNGAG00000024107	Upf1	76	55.309	Nannospalax_galili
YMR080C	NAM7	84	56.916	ENSNBRG00000000670	upf1	75	56.916	Neolamprologus_brichardi
YMR080C	NAM7	82	57.822	ENSNBRG00000022069	-	77	57.822	Neolamprologus_brichardi
YMR080C	NAM7	84	53.034	ENSNLEG00000006062	UPF1	77	53.034	Nomascus_leucogenys
YMR080C	NAM7	82	55.444	ENSOPRG00000014018	UPF1	77	55.444	Ochotona_princeps
YMR080C	NAM7	84	56.348	ENSODEG00000012426	UPF1	78	54.765	Octodon_degus
YMR080C	NAM7	82	57.947	ENSONIG00000012729	-	72	57.947	Oreochromis_niloticus
YMR080C	NAM7	84	56.760	ENSONIG00000010452	upf1	72	57.697	Oreochromis_niloticus
YMR080C	NAM7	85	55.006	ENSOANG00000004568	UPF1	77	54.147	Ornithorhynchus_anatinus
YMR080C	NAM7	84	56.793	ENSORLG00000008453	upf1	74	56.793	Oryzias_latipes
YMR080C	NAM7	84	56.793	ENSORLG00020014758	upf1	74	56.793	Oryzias_latipes_hni
YMR080C	NAM7	84	56.793	ENSORLG00015010165	upf1	78	54.279	Oryzias_latipes_hsok
YMR080C	NAM7	84	56.793	ENSOMEG00000003665	upf1	74	56.793	Oryzias_melastigma
YMR080C	NAM7	86	55.962	ENSOGAG00000012866	UPF1	75	55.962	Otolemur_garnettii
YMR080C	NAM7	87	54.895	ENSOARG00000010739	UPF1	78	54.895	Ovis_aries
YMR080C	NAM7	84	56.348	ENSPPAG00000043884	UPF1	75	56.348	Pan_paniscus
YMR080C	NAM7	87	55.128	ENSPPRG00000023470	UPF1	75	55.128	Panthera_pardus
YMR080C	NAM7	85	56.145	ENSPTIG00000010159	UPF1	80	56.145	Panthera_tigris_altaica
YMR080C	NAM7	86	55.309	ENSPTRG00000010721	UPF1	76	55.309	Pan_troglodytes
YMR080C	NAM7	86	55.309	ENSPANG00000008847	UPF1	76	55.309	Papio_anubis
YMR080C	NAM7	84	56.916	ENSPKIG00000006069	upf1	77	57.697	Paramormyrops_kingsleyae
YMR080C	NAM7	58	57.699	ENSPSIG00000009491	UPF1	73	57.699	Pelodiscus_sinensis
YMR080C	NAM7	84	57.283	ENSPMGG00000017327	upf1	74	57.283	Periophthalmus_magnuspinnatus
YMR080C	NAM7	86	55.309	ENSPEMG00000001085	Upf1	76	55.309	Peromyscus_maniculatus_bairdii
YMR080C	NAM7	84	56.951	ENSPMAG00000001206	upf1	74	56.951	Petromyzon_marinus
YMR080C	NAM7	82	57.822	ENSPCIG00000006156	UPF1	71	57.822	Phascolarctos_cinereus
YMR080C	NAM7	87	55.193	ENSPLAG00000018155	-	77	55.193	Poecilia_latipinna
YMR080C	NAM7	82	57.822	ENSPLAG00000016232	-	73	57.822	Poecilia_latipinna
YMR080C	NAM7	87	55.309	ENSPMEG00000011443	-	77	55.309	Poecilia_mexicana
YMR080C	NAM7	82	57.822	ENSPMEG00000016319	-	73	57.822	Poecilia_mexicana
YMR080C	NAM7	84	57.038	ENSPREG00000011247	-	73	57.822	Poecilia_reticulata
YMR080C	NAM7	87	55.491	ENSPREG00000009940	upf1	76	55.426	Poecilia_reticulata
YMR080C	NAM7	86	52.859	ENSPPYG00000009752	UPF1	75	52.859	Pongo_abelii
YMR080C	NAM7	57	66.102	ENSPCAG00000012962	UPF1	50	66.102	Procavia_capensis
YMR080C	NAM7	86	55.322	ENSPCOG00000023813	UPF1	77	54.639	Propithecus_coquereli
YMR080C	NAM7	64	56.550	ENSPVAG00000003183	UPF1	56	56.550	Pteropus_vampyrus
YMR080C	NAM7	84	56.916	ENSPNYG00000003694	upf1	72	57.697	Pundamilia_nyererei
YMR080C	NAM7	82	57.947	ENSPNYG00000016731	-	72	57.947	Pundamilia_nyererei
YMR080C	NAM7	84	56.916	ENSPNAG00000025614	upf1	76	55.294	Pygocentrus_nattereri
YMR080C	NAM7	86	55.962	ENSRNOG00000020134	Upf1	76	55.962	Rattus_norvegicus
YMR080C	NAM7	80	56.407	ENSRBIG00000013894	UPF1	76	57.283	Rhinopithecus_bieti
YMR080C	NAM7	84	56.348	ENSRROG00000040935	UPF1	76	57.283	Rhinopithecus_roxellana
YMR080C	NAM7	84	56.348	ENSSBOG00000023632	UPF1	75	56.348	Saimiri_boliviensis_boliviensis
YMR080C	NAM7	84	56.333	ENSSHAG00000010499	UPF1	78	56.333	Sarcophilus_harrisii
YMR080C	NAM7	84	56.916	ENSSFOG00015021095	upf1	78	56.916	Scleropages_formosus
YMR080C	NAM7	82	57.822	ENSSMAG00000021018	-	72	57.822	Scophthalmus_maximus
YMR080C	NAM7	84	56.793	ENSSMAG00000005055	upf1	73	56.793	Scophthalmus_maximus
YMR080C	NAM7	87	55.778	ENSSDUG00000009629	-	76	55.778	Seriola_dumerili
YMR080C	NAM7	84	56.916	ENSSDUG00000013320	upf1	71	57.697	Seriola_dumerili
YMR080C	NAM7	87	55.778	ENSSLDG00000006878	-	76	55.778	Seriola_lalandi_dorsalis
YMR080C	NAM7	84	56.916	ENSSLDG00000020868	upf1	72	57.697	Seriola_lalandi_dorsalis
YMR080C	NAM7	84	57.038	ENSSPUG00000010538	UPF1	82	54.451	Sphenodon_punctatus
YMR080C	NAM7	87	55.910	ENSSPAG00000011521	-	76	55.910	Stegastes_partitus
YMR080C	NAM7	78	57.963	ENSSPAG00000000003	upf1	71	57.963	Stegastes_partitus
YMR080C	NAM7	84	57.038	ENSSSCG00000039301	UPF1	78	57.038	Sus_scrofa
YMR080C	NAM7	87	50.637	ENSTGUG00000001057	UPF1	90	50.637	Taeniopygia_guttata
YMR080C	NAM7	84	56.793	ENSTRUG00000000150	upf1	75	56.793	Takifugu_rubripes
YMR080C	NAM7	87	55.660	ENSTRUG00000005131	-	76	55.660	Takifugu_rubripes
YMR080C	NAM7	82	53.817	ENSTTRG00000011544	UPF1	71	53.817	Tursiops_truncatus
YMR080C	NAM7	82	57.822	ENSUAMG00000007093	UPF1	71	57.822	Ursus_americanus
YMR080C	NAM7	87	55.660	ENSUMAG00000006652	UPF1	79	58.039	Ursus_maritimus
YMR080C	NAM7	82	57.822	ENSVVUG00000007797	UPF1	71	57.822	Vulpes_vulpes
YMR080C	NAM7	68	54.720	ENSXETG00000013602	upf1	61	55.606	Xenopus_tropicalis
YMR080C	NAM7	84	56.793	ENSXCOG00000015275	-	75	56.793	Xiphophorus_couchianus
YMR080C	NAM7	84	57.038	ENSXCOG00000005764	-	79	57.038	Xiphophorus_couchianus
YMR080C	NAM7	84	57.038	ENSXMAG00000002540	-	73	57.822	Xiphophorus_maculatus
YMR080C	NAM7	84	56.916	ENSXMAG00000001703	-	75	56.916	Xiphophorus_maculatus