EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YMR128W (Gene tree)
Gene ID: -
Gene Symbol: ECM16
Alias: DHR1
Full Name: Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP%3B predominantly nucleolar in distribution%3B required for 18S rRNA synthesis
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3804 bases
Position: chrXIII:523696-527499
Accession: S000004735
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR128W_mRNA	DEAD	PF00270.29	3.2e-08	1	1
YMR128W_mRNA	HA2	PF04408.23	1.9e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR128W_mRNA	-	3804	-	YMR128W_mRNA	1267 (aa)	-	Q04217

Gene Model

Click here to download YMR128W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR128W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YMR128W	ECM16	64	32.882	YKR086W	PRP16	63	42.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR128W	ECM16	62	43.067	ENSG00000150990	DHX37	79	42.509	Homo_sapiens
YMR128W	ECM16	61	45.693	ENSAPOG00000021493	dhx37	69	45.018	Acanthochromis_polyacanthus
YMR128W	ECM16	62	43.558	ENSAMEG00000015543	DHX37	65	43.580	Ailuropoda_melanoleuca
YMR128W	ECM16	60	45.823	ENSACIG00000006590	dhx37	68	45.115	Amphilophus_citrinellus
YMR128W	ECM16	61	45.352	ENSAOCG00000015168	dhx37	64	45.455	Amphiprion_ocellaris
YMR128W	ECM16	61	45.489	ENSAPEG00000017509	dhx37	70	43.353	Amphiprion_percula
YMR128W	ECM16	64	45.089	ENSATEG00000020638	dhx37	70	43.862	Anabas_testudineus
YMR128W	ECM16	68	43.018	ENSAPLG00000009562	DHX37	71	42.793	Anas_platyrhynchos
YMR128W	ECM16	61	45.375	ENSACAG00000014642	DHX37	65	45.375	Anolis_carolinensis
YMR128W	ECM16	62	40.754	ENSANAG00000034653	-	66	41.026	Aotus_nancymaae
YMR128W	ECM16	62	41.840	ENSANAG00000023048	-	66	41.071	Aotus_nancymaae
YMR128W	ECM16	61	45.105	ENSACLG00000011192	dhx37	66	45.217	Astatotilapia_calliptera
YMR128W	ECM16	64	43.437	ENSAMXG00000006130	dhx37	67	43.885	Astyanax_mexicanus
YMR128W	ECM16	62	43.260	ENSBTAG00000020414	DHX37	65	42.530	Bos_taurus
YMR128W	ECM16	65	39.529	WBGene00015525	rha-2	74	37.942	Caenorhabditis_elegans
YMR128W	ECM16	62	42.927	ENSCJAG00000021400	DHX37	79	41.847	Callithrix_jacchus
YMR128W	ECM16	62	43.067	ENSCAFG00000006952	DHX37	65	43.346	Canis_familiaris
YMR128W	ECM16	62	43.067	ENSCAFG00020012586	DHX37	65	43.346	Canis_lupus_dingo
YMR128W	ECM16	61	43.554	ENSCHIG00000019152	DHX37	64	43.500	Capra_hircus
YMR128W	ECM16	60	44.174	ENSTSYG00000028383	DHX37	77	43.159	Carlito_syrichta
YMR128W	ECM16	62	43.016	ENSCAPG00000017032	DHX37	65	42.271	Cavia_aperea
YMR128W	ECM16	62	43.016	ENSCPOG00000024675	DHX37	65	42.271	Cavia_porcellus
YMR128W	ECM16	62	43.403	ENSCCAG00000033656	DHX37	78	42.236	Cebus_capucinus
YMR128W	ECM16	62	40.590	ENSCATG00000037537	DHX37	66	40.195	Cercocebus_atys
YMR128W	ECM16	62	42.336	ENSCLAG00000010370	DHX37	64	42.609	Chinchilla_lanigera
YMR128W	ECM16	68	41.131	ENSCSAG00000001977	DHX37	72	40.879	Chlorocebus_sabaeus
YMR128W	ECM16	62	45.297	ENSCPBG00000024888	DHX37	72	46.420	Chrysemys_picta_bellii
YMR128W	ECM16	68	38.326	ENSCING00000001153	-	70	38.785	Ciona_intestinalis
YMR128W	ECM16	68	49.593	ENSCSAVG00000009212	-	81	38.680	Ciona_savignyi
YMR128W	ECM16	61	44.252	ENSCGRG00001014560	Dhx37	64	44.264	Cricetulus_griseus_chok1gshd
YMR128W	ECM16	61	44.252	ENSCGRG00000011701	Dhx37	65	44.264	Cricetulus_griseus_crigri
YMR128W	ECM16	63	44.391	ENSCSEG00000019728	dhx37	65	45.006	Cynoglossus_semilaevis
YMR128W	ECM16	58	40.903	ENSCSEG00000018466	-	84	41.079	Cynoglossus_semilaevis
YMR128W	ECM16	61	45.682	ENSCVAG00000018153	dhx37	64	45.217	Cyprinodon_variegatus
YMR128W	ECM16	68	41.573	ENSDARG00000062612	dhx37	70	41.986	Danio_rerio
YMR128W	ECM16	62	40.173	ENSDNOG00000003434	DHX37	66	39.731	Dasypus_novemcinctus
YMR128W	ECM16	61	44.040	ENSDORG00000012965	Dhx37	65	44.291	Dipodomys_ordii
YMR128W	ECM16	68	39.344	FBgn0001330	kz	70	39.368	Drosophila_melanogaster
YMR128W	ECM16	56	40.132	ENSEBUG00000013468	dhx37	71	38.254	Eptatretus_burgeri
YMR128W	ECM16	61	43.875	ENSEASG00005013134	DHX37	69	43.587	Equus_asinus_asinus
YMR128W	ECM16	61	43.571	ENSECAG00000007404	DHX37	64	42.945	Equus_caballus
YMR128W	ECM16	62	44.118	ENSELUG00000008988	dhx37	71	42.424	Esox_lucius
YMR128W	ECM16	62	42.753	ENSFCAG00000014583	DHX37	81	43.362	Felis_catus
YMR128W	ECM16	61	45.342	ENSFALG00000009403	DHX37	71	45.161	Ficedula_albicollis
YMR128W	ECM16	62	42.822	ENSFDAG00000009235	DHX37	65	42.892	Fukomys_damarensis
YMR128W	ECM16	61	45.489	ENSFHEG00000018467	dhx37	67	45.081	Fundulus_heteroclitus
YMR128W	ECM16	62	44.444	ENSGMOG00000011509	dhx37	65	44.444	Gadus_morhua
YMR128W	ECM16	61	45.786	ENSGALG00000002964	DHX37	65	46.509	Gallus_gallus
YMR128W	ECM16	62	45.377	ENSGAFG00000000621	dhx37	67	50.693	Gambusia_affinis
YMR128W	ECM16	61	43.960	ENSGACG00000003927	dhx37	64	44.195	Gasterosteus_aculeatus
YMR128W	ECM16	62	45.792	ENSGAGG00000007548	DHX37	68	46.914	Gopherus_agassizii
YMR128W	ECM16	62	43.558	ENSGGOG00000005339	DHX37	66	42.238	Gorilla_gorilla
YMR128W	ECM16	61	45.477	ENSHBUG00000013916	dhx37	67	45.477	Haplochromis_burtoni
YMR128W	ECM16	62	42.105	ENSHGLG00000014066	DHX37	65	41.475	Heterocephalus_glaber_female
YMR128W	ECM16	62	41.191	ENSHGLG00100019104	DHX37	65	40.073	Heterocephalus_glaber_male
YMR128W	ECM16	57	60.432	ENSIPUG00000025001	DHX37	59	60.432	Ictalurus_punctatus
YMR128W	ECM16	64	42.994	ENSSTOG00000004784	DHX37	67	43.442	Ictidomys_tridecemlineatus
YMR128W	ECM16	61	42.894	ENSJJAG00000021254	Dhx37	65	42.714	Jaculus_jaculus
YMR128W	ECM16	61	45.477	ENSKMAG00000003517	dhx37	65	45.410	Kryptolebias_marmoratus
YMR128W	ECM16	61	44.513	ENSLBEG00000025303	dhx37	67	44.444	Labrus_bergylta
YMR128W	ECM16	61	44.596	ENSLACG00000012579	DHX37	64	44.335	Latimeria_chalumnae
YMR128W	ECM16	54	46.695	ENSLOCG00000001768	dhx37	64	46.058	Lepisosteus_oculatus
YMR128W	ECM16	61	43.429	ENSLAFG00000004176	DHX37	64	43.358	Loxodonta_africana
YMR128W	ECM16	62	43.173	ENSMFAG00000037879	DHX37	66	42.753	Macaca_fascicularis
YMR128W	ECM16	62	43.173	ENSMMUG00000017902	DHX37	66	42.753	Macaca_mulatta
YMR128W	ECM16	62	40.049	ENSMNEG00000042951	DHX37	77	41.160	Macaca_nemestrina
YMR128W	ECM16	62	41.205	ENSMLEG00000043019	DHX37	67	40.804	Mandrillus_leucophaeus
YMR128W	ECM16	61	45.711	ENSMAMG00000014318	dhx37	70	43.616	Mastacembelus_armatus
YMR128W	ECM16	61	45.105	ENSMZEG00005009802	dhx37	65	45.455	Maylandia_zebra
YMR128W	ECM16	61	45.262	ENSMGAG00000002630	DHX37	73	44.000	Meleagris_gallopavo
YMR128W	ECM16	61	44.209	ENSMAUG00000001526	Dhx37	65	44.180	Mesocricetus_auratus
YMR128W	ECM16	68	40.985	ENSMICG00000005216	DHX37	72	41.006	Microcebus_murinus
YMR128W	ECM16	62	43.917	ENSMOCG00000003143	Dhx37	66	43.804	Microtus_ochrogaster
YMR128W	ECM16	61	45.375	ENSMMOG00000012526	dhx37	71	41.793	Mola_mola
YMR128W	ECM16	61	45.098	ENSMODG00000015681	DHX37	72	45.185	Monodelphis_domestica
YMR128W	ECM16	68	41.824	ENSMALG00000020684	dhx37	63	44.458	Monopterus_albus
YMR128W	ECM16	62	43.574	MGP_CAROLIEiJ_G0027766	Dhx37	65	43.452	Mus_caroli
YMR128W	ECM16	62	43.574	ENSMUSG00000029480	Dhx37	65	43.484	Mus_musculus
YMR128W	ECM16	62	43.329	MGP_PahariEiJ_G0024346	Dhx37	65	43.240	Mus_pahari
YMR128W	ECM16	62	43.574	MGP_SPRETEiJ_G0028765	Dhx37	65	43.484	Mus_spretus
YMR128W	ECM16	61	43.820	ENSNGAG00000014443	Dhx37	64	43.805	Nannospalax_galili
YMR128W	ECM16	61	44.169	ENSNBRG00000019133	dhx37	67	44.743	Neolamprologus_brichardi
YMR128W	ECM16	62	38.745	ENSNLEG00000002551	DHX37	67	37.914	Nomascus_leucogenys
YMR128W	ECM16	62	43.154	ENSODEG00000009929	DHX37	65	42.428	Octodon_degus
YMR128W	ECM16	61	45.421	ENSONIG00000014404	dhx37	65	45.813	Oreochromis_niloticus
YMR128W	ECM16	62	46.002	ENSOANG00000001323	DHX37	67	46.002	Ornithorhynchus_anatinus
YMR128W	ECM16	60	56.089	ENSOCUG00000008090	DHX37	70	38.547	Oryctolagus_cuniculus
YMR128W	ECM16	61	45.932	ENSORLG00000002635	dhx37	65	45.932	Oryzias_latipes
YMR128W	ECM16	61	46.250	ENSORLG00020005608	dhx37	64	46.250	Oryzias_latipes_hni
YMR128W	ECM16	61	45.807	ENSORLG00015015337	dhx37	64	45.807	Oryzias_latipes_hsok
YMR128W	ECM16	62	45.443	ENSOMEG00000000674	dhx37	69	44.165	Oryzias_melastigma
YMR128W	ECM16	63	42.874	ENSOGAG00000010508	DHX37	67	43.116	Otolemur_garnettii
YMR128W	ECM16	57	44.695	ENSOARG00000017866	-	72	44.356	Ovis_aries
YMR128W	ECM16	62	43.067	ENSPPAG00000013771	DHX37	66	42.509	Pan_paniscus
YMR128W	ECM16	61	43.333	ENSPPRG00000005144	DHX37	80	44.183	Panthera_pardus
YMR128W	ECM16	60	39.695	ENSPTIG00000001223	DHX37	86	40.252	Panthera_tigris_altaica
YMR128W	ECM16	62	42.945	ENSPTRG00000050780	DHX37	66	42.387	Pan_troglodytes
YMR128W	ECM16	68	41.020	ENSPANG00000011473	DHX37	72	40.659	Papio_anubis
YMR128W	ECM16	68	41.117	ENSPKIG00000024671	dhx37	77	39.126	Paramormyrops_kingsleyae
YMR128W	ECM16	61	46.700	ENSPSIG00000003211	DHX37	76	46.742	Pelodiscus_sinensis
YMR128W	ECM16	61	44.444	ENSPMGG00000018379	dhx37	66	44.556	Periophthalmus_magnuspinnatus
YMR128W	ECM16	61	43.403	ENSPEMG00000001822	Dhx37	65	44.348	Peromyscus_maniculatus_bairdii
YMR128W	ECM16	69	41.935	ENSPCIG00000019185	DHX37	66	54.064	Phascolarctos_cinereus
YMR128W	ECM16	61	45.581	ENSPFOG00000012138	dhx37	70	43.213	Poecilia_formosa
YMR128W	ECM16	61	45.581	ENSPLAG00000017487	dhx37	70	43.100	Poecilia_latipinna
YMR128W	ECM16	61	45.581	ENSPMEG00000004040	dhx37	72	43.100	Poecilia_mexicana
YMR128W	ECM16	61	45.557	ENSPREG00000011504	dhx37	70	43.100	Poecilia_reticulata
YMR128W	ECM16	62	41.451	ENSPPYG00000005106	DHX37	65	40.926	Pongo_abelii
YMR128W	ECM16	53	52.060	ENSPCAG00000008968	DHX37	59	52.060	Procavia_capensis
YMR128W	ECM16	69	40.769	ENSPCOG00000027512	DHX37	82	41.677	Propithecus_coquereli
YMR128W	ECM16	61	43.820	ENSPVAG00000008669	DHX37	65	43.032	Pteropus_vampyrus
YMR128W	ECM16	61	44.734	ENSPNYG00000008298	dhx37	68	45.355	Pundamilia_nyererei
YMR128W	ECM16	63	43.062	ENSPNAG00000007771	dhx37	66	43.468	Pygocentrus_nattereri
YMR128W	ECM16	61	43.945	ENSRNOG00000022171	Dhx37	64	43.945	Rattus_norvegicus
YMR128W	ECM16	62	43.243	ENSRBIG00000043457	DHX37	66	42.230	Rhinopithecus_bieti
YMR128W	ECM16	62	43.243	ENSRROG00000041401	DHX37	66	42.230	Rhinopithecus_roxellana
YMR128W	ECM16	62	42.980	ENSSBOG00000026565	DHX37	66	42.543	Saimiri_boliviensis_boliviensis
YMR128W	ECM16	62	44.969	ENSSFOG00015013932	dhx37	66	44.377	Scleropages_formosus
YMR128W	ECM16	61	45.823	ENSSMAG00000006189	dhx37	67	46.078	Scophthalmus_maximus
YMR128W	ECM16	61	45.343	ENSSDUG00000002265	dhx37	70	43.659	Seriola_dumerili
YMR128W	ECM16	61	45.129	ENSSLDG00000003710	dhx37	71	43.065	Seriola_lalandi_dorsalis
YMR128W	ECM16	63	45.576	ENSSPUG00000013313	DHX37	73	45.746	Sphenodon_punctatus
YMR128W	ECM16	62	45.890	ENSSPAG00000015538	dhx37	65	46.041	Stegastes_partitus
YMR128W	ECM16	61	43.930	ENSSSCG00000009758	DHX37	64	43.860	Sus_scrofa
YMR128W	ECM16	61	40.399	ENSTGUG00000004953	-	67	39.927	Taeniopygia_guttata
YMR128W	ECM16	53	43.579	ENSTRUG00000016466	dhx37	73	43.777	Takifugu_rubripes
YMR128W	ECM16	61	44.956	ENSTNIG00000015925	dhx37	64	45.037	Tetraodon_nigroviridis
YMR128W	ECM16	54	48.297	ENSTTRG00000001648	DHX37	57	47.461	Tursiops_truncatus
YMR128W	ECM16	62	43.190	ENSUAMG00000003979	DHX37	66	43.210	Ursus_americanus
YMR128W	ECM16	62	43.067	ENSUMAG00000000800	DHX37	70	43.086	Ursus_maritimus
YMR128W	ECM16	56	54.286	ENSVVUG00000025832	DHX37	68	43.436	Vulpes_vulpes
YMR128W	ECM16	61	44.279	ENSXETG00000001202	dhx37	78	43.960	Xenopus_tropicalis
YMR128W	ECM16	61	45.316	ENSXCOG00000002147	dhx37	70	42.421	Xiphophorus_couchianus
YMR128W	ECM16	61	45.535	ENSXMAG00000014623	dhx37	70	42.394	Xiphophorus_maculatus