EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YMR229C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 5190
Position: chrXIII:725934-731123
Accession: S000004842
RBP type: canonical RBP
Summary: RNA binding protein involved in synthesis of 18S and 5.8S rRNAs%3B component of ribosomal small subunit (SSU) processome and 90S preribosome%3B required for pre-rRNA packaging and compaction of processome into dense terminal balls%3B part of Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription with role in biogenesis of large ribosomal subunit%3B binds single stranded tracts of U's%3B relocalizes from nucleolus to nucleus upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR229C_mRNA	S1	PF00575.23	5.2e-55	1	3
YMR229C_mRNA	S1	PF00575.23	5.2e-55	2	3
YMR229C_mRNA	S1	PF00575.23	5.2e-55	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR229C_mRNA	-	5190	-	YMR229C_mRNA	1729 (aa)	-	Q05022

Gene Model

Click here to download YMR229C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR229C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR229C	-	98	40.318	ENSG00000148843	PDCD11	89	48.327	Homo_sapiens
YMR229C	-	75	32.544	ENSAPOG00000015629	pdcd11	89	32.787	Acanthochromis_polyacanthus
YMR229C	-	96	41.226	ENSAMEG00000017935	PDCD11	87	48.327	Ailuropoda_melanoleuca
YMR229C	-	54	36.310	ENSACIG00000006458	-	82	36.310	Amphilophus_citrinellus
YMR229C	-	98	32.637	ENSAOCG00000015287	pdcd11	62	33.136	Amphiprion_ocellaris
YMR229C	-	75	32.934	ENSAPEG00000020240	pdcd11	80	32.934	Amphiprion_percula
YMR229C	-	98	33.136	ENSATEG00000021043	pdcd11	84	45.487	Anabas_testudineus
YMR229C	-	91	46.667	ENSAPLG00000010301	PDCD11	85	46.667	Anas_platyrhynchos
YMR229C	-	98	33.638	ENSACAG00000004796	PDCD11	91	48.120	Anolis_carolinensis
YMR229C	-	94	42.647	ENSANAG00000034576	PDCD11	89	48.699	Aotus_nancymaae
YMR229C	-	88	43.385	ENSACLG00000018236	pdcd11	86	41.693	Astatotilapia_calliptera
YMR229C	-	87	41.042	ENSAMXG00000005458	pdcd11	83	45.038	Astyanax_mexicanus
YMR229C	-	94	43.023	ENSBTAG00000009715	PDCD11	83	47.619	Bos_taurus
YMR229C	-	96	40.849	ENSCJAG00000018257	PDCD11	89	48.699	Callithrix_jacchus
YMR229C	-	94	42.604	ENSCAFG00000010411	PDCD11	88	48.327	Canis_familiaris
YMR229C	-	94	42.604	ENSCAFG00020010369	PDCD11	89	48.327	Canis_lupus_dingo
YMR229C	-	94	44.012	ENSCHIG00000025218	PDCD11	82	48.864	Capra_hircus
YMR229C	-	94	32.118	ENSTSYG00000033423	PDCD11	99	31.933	Carlito_syrichta
YMR229C	-	70	33.059	ENSCAPG00000005386	PDCD11	66	48.315	Cavia_aperea
YMR229C	-	90	42.647	ENSCPOG00000010957	PDCD11	87	48.473	Cavia_porcellus
YMR229C	-	98	40.584	ENSCCAG00000018950	PDCD11	89	48.327	Cebus_capucinus
YMR229C	-	96	40.526	ENSCATG00000044331	PDCD11	89	48.327	Cercocebus_atys
YMR229C	-	94	42.857	ENSCLAG00000001029	PDCD11	86	47.619	Chinchilla_lanigera
YMR229C	-	98	40.526	ENSCSAG00000005346	PDCD11	89	48.327	Chlorocebus_sabaeus
YMR229C	-	66	48.062	ENSCHOG00000004796	PDCD11	64	48.062	Choloepus_hoffmanni
YMR229C	-	98	34.326	ENSCPBG00000024487	PDCD11	99	34.676	Chrysemys_picta_bellii
YMR229C	-	98	40.897	ENSCANG00000043300	PDCD11	89	48.699	Colobus_angolensis_palliatus
YMR229C	-	95	41.983	ENSCGRG00001006458	Pdcd11	90	47.955	Cricetulus_griseus_chok1gshd
YMR229C	-	95	41.983	ENSCGRG00000003583	Pdcd11	90	47.778	Cricetulus_griseus_crigri
YMR229C	-	95	31.315	ENSCSEG00000010739	pdcd11	91	31.218	Cynoglossus_semilaevis
YMR229C	-	94	38.304	ENSDARG00000052480	pdcd11	84	44.649	Danio_rerio
YMR229C	-	97	40.365	ENSDNOG00000013838	PDCD11	86	48.699	Dasypus_novemcinctus
YMR229C	-	94	41.399	ENSDORG00000010420	Pdcd11	91	47.584	Dipodomys_ordii
YMR229C	-	65	40.678	ENSETEG00000000813	PDCD11	60	47.685	Echinops_telfairi
YMR229C	-	89	41.691	ENSEASG00005015159	PDCD11	88	47.955	Equus_asinus_asinus
YMR229C	-	94	42.647	ENSECAG00000020507	PDCD11	82	47.955	Equus_caballus
YMR229C	-	94	43.787	ENSFCAG00000002384	PDCD11	85	48.699	Felis_catus
YMR229C	-	91	47.407	ENSFALG00000008775	PDCD11	99	30.769	Ficedula_albicollis
YMR229C	-	81	32.227	ENSFHEG00000022997	pdcd11	60	46.097	Fundulus_heteroclitus
YMR229C	-	93	30.757	ENSGMOG00000004186	pdcd11	85	30.428	Gadus_morhua
YMR229C	-	93	34.225	ENSGAFG00000012806	pdcd11	78	45.038	Gambusia_affinis
YMR229C	-	98	32.138	ENSGACG00000018233	pdcd11	89	31.893	Gasterosteus_aculeatus
YMR229C	-	88	46.595	ENSGAGG00000024314	PDCD11	90	46.595	Gopherus_agassizii
YMR229C	-	97	40.318	ENSGGOG00000011621	PDCD11	89	47.955	Gorilla_gorilla
YMR229C	-	95	42.814	ENSHBUG00000020226	pdcd11	95	34.503	Haplochromis_burtoni
YMR229C	-	94	42.604	ENSHGLG00000001462	PDCD11	85	47.955	Heterocephalus_glaber_female
YMR229C	-	94	40.237	ENSHGLG00100018779	PDCD11	86	44.981	Heterocephalus_glaber_male
YMR229C	-	94	32.037	ENSHCOG00000016006	pdcd11	84	44.815	Hippocampus_comes
YMR229C	-	64	33.333	ENSIPUG00000015102	pdcd11	74	32.374	Ictalurus_punctatus
YMR229C	-	95	43.195	ENSSTOG00000014553	PDCD11	86	48.327	Ictidomys_tridecemlineatus
YMR229C	-	98	42.183	ENSJJAG00000015523	Pdcd11	85	48.327	Jaculus_jaculus
YMR229C	-	98	33.489	ENSLOCG00000011818	pdcd11	96	33.333	Lepisosteus_oculatus
YMR229C	-	98	32.416	ENSLAFG00000008398	PDCD11	96	32.416	Loxodonta_africana
YMR229C	-	98	40.526	ENSMFAG00000044058	PDCD11	89	48.327	Macaca_fascicularis
YMR229C	-	98	40.526	ENSMMUG00000007058	PDCD11	89	48.327	Macaca_mulatta
YMR229C	-	98	40.849	ENSMNEG00000040726	PDCD11	89	48.327	Macaca_nemestrina
YMR229C	-	98	34.135	ENSMLEG00000040978	PDCD11	90	48.327	Mandrillus_leucophaeus
YMR229C	-	98	31.522	ENSMAMG00000009572	pdcd11	69	31.522	Mastacembelus_armatus
YMR229C	-	95	43.114	ENSMZEG00005008949	pdcd11	95	34.503	Maylandia_zebra
YMR229C	-	87	47.407	ENSMGAG00000010482	PDCD11	84	47.407	Meleagris_gallopavo
YMR229C	-	97	39.633	ENSMAUG00000014924	Pdcd11	68	48.327	Mesocricetus_auratus
YMR229C	-	94	43.068	ENSMICG00000012421	PDCD11	89	47.955	Microcebus_murinus
YMR229C	-	97	40.922	ENSMOCG00000021792	Pdcd11	86	46.520	Microtus_ochrogaster
YMR229C	-	76	36.340	ENSMMOG00000007572	pdcd11	85	31.361	Mola_mola
YMR229C	-	88	40.240	ENSMODG00000011077	PDCD11	77	44.656	Monodelphis_domestica
YMR229C	-	82	35.143	ENSMALG00000003859	pdcd11	79	30.978	Monopterus_albus
YMR229C	-	95	42.197	MGP_CAROLIEiJ_G0023050	Pdcd11	87	47.253	Mus_caroli
YMR229C	-	95	41.908	ENSMUSG00000025047	Pdcd11	86	46.886	Mus_musculus
YMR229C	-	91	47.253	MGP_PahariEiJ_G0014540	Pdcd11	86	47.253	Mus_pahari
YMR229C	-	94	42.197	MGP_SPRETEiJ_G0023971	Pdcd11	85	47.253	Mus_spretus
YMR229C	-	95	41.787	ENSMPUG00000016829	PDCD11	89	47.619	Mustela_putorius_furo
YMR229C	-	94	41.983	ENSMLUG00000004997	PDCD11	87	47.955	Myotis_lucifugus
YMR229C	-	94	42.183	ENSNGAG00000018143	Pdcd11	84	46.840	Nannospalax_galili
YMR229C	-	73	43.234	ENSNBRG00000021596	pdcd11	94	34.503	Neolamprologus_brichardi
YMR229C	-	97	40.789	ENSNLEG00000026700	PDCD11	88	48.327	Nomascus_leucogenys
YMR229C	-	96	41.114	ENSOPRG00000010593	PDCD11	84	47.985	Ochotona_princeps
YMR229C	-	94	42.151	ENSODEG00000008079	PDCD11	84	48.175	Octodon_degus
YMR229C	-	94	43.114	ENSONIG00000018835	pdcd11	87	32.686	Oreochromis_niloticus
YMR229C	-	92	46.863	ENSOANG00000001636	-	89	46.863	Ornithorhynchus_anatinus
YMR229C	-	94	42.899	ENSOCUG00000006312	PDCD11	84	47.955	Oryctolagus_cuniculus
YMR229C	-	53	34.706	ENSORLG00000012995	pdcd11	82	34.637	Oryzias_latipes
YMR229C	-	80	34.118	ENSORLG00020003642	pdcd11	64	44.238	Oryzias_latipes_hni
YMR229C	-	96	34.118	ENSORLG00015001618	pdcd11	72	44.238	Oryzias_latipes_hsok
YMR229C	-	57	32.855	ENSOMEG00000010904	pdcd11	79	31.898	Oryzias_melastigma
YMR229C	-	91	48.699	ENSOGAG00000008683	PDCD11	83	48.699	Otolemur_garnettii
YMR229C	-	94	43.713	ENSOARG00000003719	PDCD11	82	48.864	Ovis_aries
YMR229C	-	98	40.318	ENSPPAG00000024593	PDCD11	89	48.327	Pan_paniscus
YMR229C	-	94	43.787	ENSPPRG00000015133	PDCD11	85	48.699	Panthera_pardus
YMR229C	-	94	43.787	ENSPTIG00000011433	PDCD11	85	48.699	Panthera_tigris_altaica
YMR229C	-	98	40.426	ENSPTRG00000002911	PDCD11	89	48.315	Pan_troglodytes
YMR229C	-	96	40.789	ENSPANG00000020959	PDCD11	89	48.327	Papio_anubis
YMR229C	-	97	33.128	ENSPKIG00000000973	pdcd11	96	31.756	Paramormyrops_kingsleyae
YMR229C	-	76	33.136	ENSPMGG00000007289	pdcd11	78	45.487	Periophthalmus_magnuspinnatus
YMR229C	-	97	39.370	ENSPEMG00000010315	Pdcd11	89	47.955	Peromyscus_maniculatus_bairdii
YMR229C	-	74	43.609	ENSPMAG00000003098	pdcd11	57	43.609	Petromyzon_marinus
YMR229C	-	91	45.420	ENSPCIG00000001118	PDCD11	87	45.420	Phascolarctos_cinereus
YMR229C	-	94	31.955	ENSPFOG00000006012	pdcd11	84	32.258	Poecilia_formosa
YMR229C	-	93	31.518	ENSPLAG00000014494	pdcd11	84	31.188	Poecilia_latipinna
YMR229C	-	93	31.214	ENSPMEG00000018177	pdcd11	80	32.258	Poecilia_mexicana
YMR229C	-	94	32.796	ENSPREG00000000475	pdcd11	96	32.796	Poecilia_reticulata
YMR229C	-	97	40.849	ENSPPYG00000002621	PDCD11	88	48.327	Pongo_abelii
YMR229C	-	94	42.899	ENSPVAG00000004176	PDCD11	86	47.955	Pteropus_vampyrus
YMR229C	-	77	33.918	ENSPNYG00000003979	pdcd11	95	33.918	Pundamilia_nyererei
YMR229C	-	92	30.463	ENSPNAG00000017225	pdcd11	90	44.928	Pygocentrus_nattereri
YMR229C	-	95	41.667	ENSRNOG00000020304	Pdcd11	86	47.445	Rattus_norvegicus
YMR229C	-	98	40.741	ENSRBIG00000011889	PDCD11	89	48.699	Rhinopithecus_bieti
YMR229C	-	98	40.897	ENSRROG00000030483	PDCD11	89	48.699	Rhinopithecus_roxellana
YMR229C	-	96	43.658	ENSSBOG00000030308	PDCD11	88	48.699	Saimiri_boliviensis_boliviensis
YMR229C	-	98	33.660	ENSSFOG00015003881	pdcd11	94	33.170	Scleropages_formosus
YMR229C	-	98	32.810	ENSSMAG00000006612	pdcd11	88	32.759	Scophthalmus_maximus
YMR229C	-	56	42.690	ENSSDUG00000021302	pdcd11	61	46.454	Seriola_dumerili
YMR229C	-	60	41.071	ENSSARG00000002540	PDCD11	53	41.071	Sorex_araneus
YMR229C	-	95	33.275	ENSSPAG00000017558	pdcd11	88	32.399	Stegastes_partitus
YMR229C	-	95	42.982	ENSSSCG00000010599	PDCD11	88	47.985	Sus_scrofa
YMR229C	-	88	39.894	ENSTNIG00000012085	pdcd11	83	46.269	Tetraodon_nigroviridis
YMR229C	-	96	41.471	ENSTBEG00000001893	PDCD11	80	47.744	Tupaia_belangeri
YMR229C	-	82	47.253	ENSTTRG00000003356	PDCD11	81	47.253	Tursiops_truncatus
YMR229C	-	94	42.773	ENSUAMG00000018015	PDCD11	87	48.327	Ursus_americanus
YMR229C	-	94	42.773	ENSUMAG00000023567	PDCD11	88	48.327	Ursus_maritimus
YMR229C	-	94	42.478	ENSVVUG00000004457	PDCD11	88	48.327	Vulpes_vulpes
YMR229C	-	92	46.181	ENSXETG00000009482	pdcd11	85	47.253	Xenopus_tropicalis
YMR229C	-	94	33.229	ENSXCOG00000012420	pdcd11	59	33.155	Xiphophorus_couchianus
YMR229C	-	97	31.320	ENSXMAG00000004638	pdcd11	99	33.155	Xiphophorus_maculatus