EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YMR230W (Gene tree)
Gene ID: -
Gene Symbol: RPS10B
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 728
Position: chrXIII:732414-733141
Accession: S000004843
RBP type: canonical RBP
Summary: Protein component of the small (40S) ribosomal subunit%3B homologous to mammalian ribosomal protein S10%2C no bacterial homolog%3B RPS10B has a paralog%2C RPS10A%2C that arose from the whole genome duplication%3B mutations in the human homolog associated with Diamond-Blackfan anemia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR230W_mRNA	S10_plectin	PF03501.15	2.9e-43	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR230W_mRNA	-	318	-	YMR230W_mRNA	105 (aa)	-	P46784

Gene Model

Click here to download YMR230W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR230W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YMR230W	RPS10B	100	97.143	YOR293W	RPS10A	100	97.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR230W	RPS10B	93	45.000	ENSAPOG00000014059	-	69	45.000	Acanthochromis_polyacanthus
YMR230W	RPS10B	93	47.000	ENSACIG00000013806	-	56	47.000	Amphilophus_citrinellus
YMR230W	RPS10B	98	43.925	ENSACIG00000019704	-	55	43.925	Amphilophus_citrinellus
YMR230W	RPS10B	93	45.000	ENSAOCG00000011000	-	58	45.000	Amphiprion_ocellaris
YMR230W	RPS10B	94	43.564	ENSAOCG00000007730	-	58	43.564	Amphiprion_ocellaris
YMR230W	RPS10B	94	45.545	ENSAPEG00000019531	-	57	45.545	Amphiprion_percula
YMR230W	RPS10B	93	36.735	ENSAPEG00000017745	-	64	36.735	Amphiprion_percula
YMR230W	RPS10B	85	48.352	ENSATEG00000004340	-	65	48.352	Anabas_testudineus
YMR230W	RPS10B	86	46.739	ENSACLG00000001013	-	53	46.739	Astatotilapia_calliptera
YMR230W	RPS10B	93	47.000	ENSAMXG00000037914	-	60	47.000	Astyanax_mexicanus
YMR230W	RPS10B	86	54.945	WBGene00004479	rps-10	61	54.945	Caenorhabditis_elegans
YMR230W	RPS10B	93	50.505	ENSCING00000006180	-	62	50.505	Ciona_intestinalis
YMR230W	RPS10B	93	50.000	ENSCSEG00000009179	-	59	50.000	Cynoglossus_semilaevis
YMR230W	RPS10B	89	55.319	FBgn0027494	RpS10a	64	52.885	Drosophila_melanogaster
YMR230W	RPS10B	86	59.341	FBgn0285947	RpS10b	57	59.341	Drosophila_melanogaster
YMR230W	RPS10B	86	36.957	ENSEBUG00000015221	-	60	36.957	Eptatretus_burgeri
YMR230W	RPS10B	93	48.000	ENSFHEG00000008769	-	63	48.000	Fundulus_heteroclitus
YMR230W	RPS10B	93	49.000	ENSHBUG00000023819	-	60	49.000	Haplochromis_burtoni
YMR230W	RPS10B	86	46.739	ENSHBUG00000018067	-	53	46.739	Haplochromis_burtoni
YMR230W	RPS10B	86	48.913	ENSLBEG00000020432	-	61	48.913	Labrus_bergylta
YMR230W	RPS10B	93	47.000	ENSLACG00000010998	-	57	47.000	Latimeria_chalumnae
YMR230W	RPS10B	93	49.000	ENSMZEG00005007838	-	60	49.000	Maylandia_zebra
YMR230W	RPS10B	86	46.739	ENSMZEG00005026198	-	53	46.739	Maylandia_zebra
YMR230W	RPS10B	93	44.000	ENSMMOG00000014380	-	52	44.000	Mola_mola
YMR230W	RPS10B	91	50.000	ENSMMOG00000003228	-	55	50.000	Mola_mola
YMR230W	RPS10B	85	46.154	ENSMALG00000015614	-	57	46.154	Monopterus_albus
YMR230W	RPS10B	93	49.000	ENSNBRG00000008848	-	69	49.000	Neolamprologus_brichardi
YMR230W	RPS10B	86	46.739	ENSNBRG00000016554	-	53	46.739	Neolamprologus_brichardi
YMR230W	RPS10B	86	50.538	ENSPKIG00000013061	-	51	50.538	Paramormyrops_kingsleyae
YMR230W	RPS10B	94	48.515	ENSPMGG00000017071	-	54	48.515	Periophthalmus_magnuspinnatus
YMR230W	RPS10B	93	39.000	ENSPMAG00000003064	-	62	39.000	Petromyzon_marinus
YMR230W	RPS10B	99	42.593	ENSPMAG00000010266	-	58	42.593	Petromyzon_marinus
YMR230W	RPS10B	93	48.000	ENSPLAG00000012690	-	60	48.000	Poecilia_latipinna
YMR230W	RPS10B	93	49.000	ENSPNYG00000012665	-	60	49.000	Pundamilia_nyererei
YMR230W	RPS10B	86	46.739	ENSPNYG00000006286	-	53	46.739	Pundamilia_nyererei
YMR230W	RPS10B	93	45.000	ENSPNAG00000021290	-	56	45.000	Pygocentrus_nattereri
YMR230W	RPS10B	86	48.387	ENSSFOG00015012004	-	53	48.387	Scleropages_formosus
YMR230W	RPS10B	93	47.000	ENSSFOG00015009603	-	50	47.000	Scleropages_formosus
YMR230W	RPS10B	93	46.000	ENSSDUG00000010997	-	60	46.000	Seriola_dumerili
YMR230W	RPS10B	94	42.574	ENSSDUG00000011052	-	64	42.574	Seriola_dumerili
YMR230W	RPS10B	93	46.000	ENSSLDG00000012473	-	64	46.000	Seriola_lalandi_dorsalis
YMR230W	RPS10B	94	43.564	ENSSLDG00000016257	-	57	43.564	Seriola_lalandi_dorsalis
YMR230W	RPS10B	93	46.000	ENSSPAG00000015615	-	78	46.000	Stegastes_partitus
YMR230W	RPS10B	94	45.545	ENSSPAG00000012512	-	52	45.545	Stegastes_partitus
YMR230W	RPS10B	92	42.424	ENSSSCG00000033521	-	61	42.424	Sus_scrofa
YMR230W	RPS10B	86	45.652	ENSXETG00000032983	-	52	44.444	Xenopus_tropicalis
YMR230W	RPS10B	93	48.000	ENSXCOG00000016917	-	62	48.000	Xiphophorus_couchianus
YMR230W	RPS10B	90	48.958	ENSXMAG00000029046	-	55	48.958	Xiphophorus_maculatus