EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YMR290C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: ATP-dependent RNA helicase%3B involved in the biogenesis of 40S and 60S ribosome subunits%3B localizes to both the nuclear periphery and nucleolus%3B highly enriched in nuclear pore complex fractions%3B constituent of 66S pre-ribosomal particles
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1518 bases
Position: chrXIII:850074-851591
Accession: S000004903
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR290C_mRNA	ResIII	PF04851.15	2.4e-06	1	1
YMR290C_mRNA	DEAD	PF00270.29	1e-46	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR290C_mRNA	-	1518	-	YMR290C_mRNA	505 (aa)	-	Q03532

Gene Model

Click here to download YMR290C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR290C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YMR290C	-	73	30.458	YKR059W	TIF1	90	31.267
YMR290C	-	71	31.455	YBR142W	-	54	31.455
YMR290C	-	72	33.777	YPL119C	DBP1	60	33.777
YMR290C	-	62	32.102	YNR038W	-	55	32.102
YMR290C	-	68	31.844	YOR204W	DED1	58	31.844
YMR290C	-	67	34.706	YDL160C	-	65	34.706
YMR290C	-	75	37.435	YHR065C	-	77	35.714
YMR290C	-	73	30.458	YJL138C	TIF2	90	31.267
YMR290C	-	73	35.171	YGL078C	-	71	35.171
YMR290C	-	88	40.708	YJL033W	HCA4	58	40.708
YMR290C	-	71	33.962	YNL112W	-	66	33.962
YMR290C	-	72	38.667	YLL008W	-	52	38.000
YMR290C	-	72	35.389	YHR169W	-	85	35.389
YMR290C	-	72	31.538	YDR243C	-	65	31.538
YMR290C	-	63	31.532	YGL171W	-	60	32.194
YMR290C	-	86	33.406	YFL002C	-	74	33.406
YMR290C	-	75	31.105	YDL084W	-	84	31.105
YMR290C	-	80	35.632	YDR194C	-	65	35.632

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR290C	-	97	59.761	ENSG00000088205	DDX18	100	64.957	Homo_sapiens
YMR290C	-	90	65.487	ENSAPOG00000019022	ddx18	81	60.311	Acanthochromis_polyacanthus
YMR290C	-	88	61.712	ENSAMEG00000012626	DDX18	66	61.712	Ailuropoda_melanoleuca
YMR290C	-	90	65.044	ENSACIG00000018534	ddx18	72	65.044	Amphilophus_citrinellus
YMR290C	-	90	65.487	ENSAOCG00000012438	ddx18	74	61.044	Amphiprion_ocellaris
YMR290C	-	90	65.487	ENSAPEG00000002348	ddx18	74	61.044	Amphiprion_percula
YMR290C	-	90	65.487	ENSATEG00000006330	ddx18	76	65.487	Anabas_testudineus
YMR290C	-	88	65.315	ENSAPLG00000011648	DDX18	85	65.315	Anas_platyrhynchos
YMR290C	-	89	65.410	ENSACAG00000002045	DDX18	68	65.410	Anolis_carolinensis
YMR290C	-	77	55.155	ENSANAG00000025869	-	62	55.155	Aotus_nancymaae
YMR290C	-	96	60.241	ENSANAG00000037489	-	73	59.960	Aotus_nancymaae
YMR290C	-	88	63.514	ENSANAG00000024417	-	67	63.514	Aotus_nancymaae
YMR290C	-	88	51.577	ENSANAG00000026802	-	68	51.577	Aotus_nancymaae
YMR290C	-	97	41.344	ENSANAG00000034318	-	71	41.344	Aotus_nancymaae
YMR290C	-	90	65.265	ENSACLG00000000352	ddx18	83	59.690	Astatotilapia_calliptera
YMR290C	-	90	64.823	ENSAMXG00000024269	ddx18	63	64.823	Astyanax_mexicanus
YMR290C	-	72	68.407	ENSAMXG00000042612	-	80	68.407	Astyanax_mexicanus
YMR290C	-	88	65.090	ENSBTAG00000027319	-	64	65.533	Bos_taurus
YMR290C	-	88	65.090	ENSBTAG00000015077	-	66	65.533	Bos_taurus
YMR290C	-	88	62.162	WBGene00015232	B0511.6	89	58.884	Caenorhabditis_elegans
YMR290C	-	97	60.040	ENSCJAG00000021414	DDX18	74	60.040	Callithrix_jacchus
YMR290C	-	88	65.090	ENSCAFG00000004950	DDX18	66	65.090	Canis_familiaris
YMR290C	-	88	63.063	ENSCAFG00020014114	DDX18	66	63.063	Canis_lupus_dingo
YMR290C	-	88	64.865	ENSCHIG00000019280	DDX18	69	64.865	Capra_hircus
YMR290C	-	88	64.414	ENSTSYG00000002540	DDX18	66	64.414	Carlito_syrichta
YMR290C	-	88	65.315	ENSCAPG00000004039	DDX18	74	65.315	Cavia_aperea
YMR290C	-	89	37.694	ENSCAPG00000002364	-	51	37.694	Cavia_aperea
YMR290C	-	97	60.040	ENSCPOG00000007532	DDX18	76	60.040	Cavia_porcellus
YMR290C	-	88	49.099	ENSCCAG00000018129	-	69	49.099	Cebus_capucinus
YMR290C	-	97	59.761	ENSCCAG00000023595	-	84	62.931	Cebus_capucinus
YMR290C	-	88	47.748	ENSCCAG00000028017	-	69	47.748	Cebus_capucinus
YMR290C	-	88	64.865	ENSCATG00000036838	DDX18	66	64.865	Cercocebus_atys
YMR290C	-	89	44.469	ENSCATG00000033079	-	70	44.469	Cercocebus_atys
YMR290C	-	97	59.841	ENSCLAG00000004684	DDX18	75	59.841	Chinchilla_lanigera
YMR290C	-	97	59.562	ENSCSAG00000016508	DDX18	75	59.562	Chlorocebus_sabaeus
YMR290C	-	82	65.777	ENSCHOG00000004191	DDX18	65	64.929	Choloepus_hoffmanni
YMR290C	-	88	65.090	ENSCPBG00000010529	DDX18	66	65.090	Chrysemys_picta_bellii
YMR290C	-	90	63.656	ENSCING00000022650	-	81	59.091	Ciona_intestinalis
YMR290C	-	89	64.967	ENSCSAVG00000004895	-	85	64.967	Ciona_savignyi
YMR290C	-	97	47.410	ENSCANG00000028903	-	73	47.410	Colobus_angolensis_palliatus
YMR290C	-	97	53.586	ENSCANG00000019507	-	73	53.586	Colobus_angolensis_palliatus
YMR290C	-	88	47.191	ENSCANG00000043728	-	71	47.191	Colobus_angolensis_palliatus
YMR290C	-	97	59.163	ENSCANG00000021885	-	75	59.163	Colobus_angolensis_palliatus
YMR290C	-	97	59.960	ENSCGRG00001010803	-	78	58.285	Cricetulus_griseus_chok1gshd
YMR290C	-	97	52.317	ENSCGRG00001016185	-	82	52.317	Cricetulus_griseus_chok1gshd
YMR290C	-	97	59.960	ENSCGRG00000008440	-	78	58.285	Cricetulus_griseus_crigri
YMR290C	-	97	52.317	ENSCGRG00000013152	-	82	52.317	Cricetulus_griseus_crigri
YMR290C	-	90	65.044	ENSCSEG00000015266	ddx18	67	65.044	Cynoglossus_semilaevis
YMR290C	-	90	64.823	ENSCVAG00000017936	ddx18	70	64.823	Cyprinodon_variegatus
YMR290C	-	88	67.342	ENSDARG00000030789	ddx18	68	67.342	Danio_rerio
YMR290C	-	72	67.127	ENSDNOG00000019096	-	66	67.127	Dasypus_novemcinctus
YMR290C	-	56	41.176	ENSDNOG00000043539	-	50	39.726	Dasypus_novemcinctus
YMR290C	-	95	60.692	ENSDORG00000011340	Ddx18	78	60.692	Dipodomys_ordii
YMR290C	-	90	62.527	FBgn0266581	pit	66	62.832	Drosophila_melanogaster
YMR290C	-	67	63.971	ENSEBUG00000006265	ddx18	72	63.971	Eptatretus_burgeri
YMR290C	-	97	59.646	ENSECAG00000015740	DDX18	75	60.204	Equus_caballus
YMR290C	-	90	64.758	ENSEEUG00000000322	DDX18	67	64.758	Erinaceus_europaeus
YMR290C	-	88	66.067	ENSELUG00000008640	ddx18	67	65.708	Esox_lucius
YMR290C	-	88	64.865	ENSFCAG00000000753	DDX18	66	64.865	Felis_catus
YMR290C	-	88	65.169	ENSFALG00000013672	DDX18	67	65.169	Ficedula_albicollis
YMR290C	-	97	60.159	ENSFDAG00000014703	DDX18	67	60.159	Fukomys_damarensis
YMR290C	-	88	42.411	ENSFDAG00000018286	-	51	42.411	Fukomys_damarensis
YMR290C	-	96	61.649	ENSGMOG00000007113	ddx18	91	61.055	Gadus_morhua
YMR290C	-	88	44.196	ENSGALG00000017156	DDX10	51	44.196	Gallus_gallus
YMR290C	-	88	65.315	ENSGALG00000012147	DDX18	67	65.315	Gallus_gallus
YMR290C	-	87	65.831	ENSGAFG00000019028	ddx18	74	65.831	Gambusia_affinis
YMR290C	-	99	59.152	ENSGACG00000001563	ddx18	84	61.616	Gasterosteus_aculeatus
YMR290C	-	97	47.410	ENSGGOG00000040382	-	73	47.410	Gorilla_gorilla
YMR290C	-	97	59.960	ENSGGOG00000028420	DDX18	75	59.960	Gorilla_gorilla
YMR290C	-	97	44.444	ENSGGOG00000039210	-	78	44.773	Gorilla_gorilla
YMR290C	-	90	65.265	ENSHBUG00000001204	ddx18	79	59.381	Haplochromis_burtoni
YMR290C	-	87	55.909	ENSHGLG00000005983	-	68	55.909	Heterocephalus_glaber_female
YMR290C	-	97	60.241	ENSHGLG00000016324	-	76	60.241	Heterocephalus_glaber_female
YMR290C	-	97	60.241	ENSHGLG00100001563	DDX18	76	60.241	Heterocephalus_glaber_male
YMR290C	-	90	65.044	ENSHCOG00000007568	ddx18	74	65.044	Hippocampus_comes
YMR290C	-	97	61.044	ENSSTOG00000010541	DDX18	76	61.044	Ictidomys_tridecemlineatus
YMR290C	-	88	61.937	ENSJJAG00000023769	-	67	61.937	Jaculus_jaculus
YMR290C	-	88	61.937	ENSJJAG00000017042	-	67	61.937	Jaculus_jaculus
YMR290C	-	88	64.350	ENSKMAG00000005975	ddx18	92	57.542	Kryptolebias_marmoratus
YMR290C	-	90	65.044	ENSLBEG00000027227	ddx18	78	60.039	Labrus_bergylta
YMR290C	-	90	65.044	ENSLBEG00000023115	DDX18	70	65.044	Labrus_bergylta
YMR290C	-	88	65.541	ENSLACG00000015308	DDX18	76	65.541	Latimeria_chalumnae
YMR290C	-	90	63.938	ENSLOCG00000003108	ddx18	68	63.938	Lepisosteus_oculatus
YMR290C	-	88	64.640	ENSLAFG00000006915	DDX18	67	64.640	Loxodonta_africana
YMR290C	-	89	51.556	ENSMFAG00000035685	-	70	51.556	Macaca_fascicularis
YMR290C	-	97	59.562	ENSMFAG00000043075	DDX18	75	59.562	Macaca_fascicularis
YMR290C	-	97	55.865	ENSMMUG00000021343	DDX18	74	55.865	Macaca_mulatta
YMR290C	-	89	50.000	ENSMMUG00000029623	-	71	50.000	Macaca_mulatta
YMR290C	-	97	42.913	ENSMNEG00000031049	-	76	42.913	Macaca_nemestrina
YMR290C	-	88	64.865	ENSMNEG00000032172	DDX18	66	64.865	Macaca_nemestrina
YMR290C	-	97	59.562	ENSMLEG00000038065	DDX18	75	59.562	Mandrillus_leucophaeus
YMR290C	-	90	52.061	ENSMLEG00000029597	-	74	50.976	Mandrillus_leucophaeus
YMR290C	-	90	65.265	ENSMAMG00000009100	ddx18	75	65.265	Mastacembelus_armatus
YMR290C	-	90	65.265	ENSMZEG00005013189	ddx18	84	59.690	Maylandia_zebra
YMR290C	-	88	65.022	ENSMGAG00000012345	DDX18	75	65.022	Meleagris_gallopavo
YMR290C	-	88	64.786	ENSMAUG00000015244	Ddx18	67	64.786	Mesocricetus_auratus
YMR290C	-	88	43.080	ENSMAUG00000009113	-	51	43.080	Mesocricetus_auratus
YMR290C	-	88	64.865	ENSMICG00000047072	-	66	64.865	Microcebus_murinus
YMR290C	-	97	54.527	ENSMOCG00000012842	-	74	55.936	Microtus_ochrogaster
YMR290C	-	97	57.344	ENSMOCG00000013664	-	78	57.344	Microtus_ochrogaster
YMR290C	-	97	57.576	ENSMOCG00000019953	-	75	57.576	Microtus_ochrogaster
YMR290C	-	88	64.350	ENSMMOG00000019289	ddx18	84	64.350	Mola_mola
YMR290C	-	96	61.122	ENSMODG00000000533	DDX18	82	61.122	Monodelphis_domestica
YMR290C	-	97	61.336	ENSMALG00000008644	ddx18	81	59.345	Monopterus_albus
YMR290C	-	97	58.954	MGP_CAROLIEiJ_G0014529	Ddx18	75	58.954	Mus_caroli
YMR290C	-	97	59.557	ENSMUSG00000001674	Ddx18	75	59.557	Mus_musculus
YMR290C	-	97	59.557	MGP_PahariEiJ_G0027765	Ddx18	75	59.557	Mus_pahari
YMR290C	-	97	60.000	MGP_SPRETEiJ_G0015336	Ddx18	75	60.000	Mus_spretus
YMR290C	-	88	64.640	ENSMPUG00000000856	-	66	64.640	Mustela_putorius_furo
YMR290C	-	85	52.326	ENSMPUG00000000414	-	96	52.326	Mustela_putorius_furo
YMR290C	-	88	64.414	ENSMLUG00000017607	DDX18	66	64.414	Myotis_lucifugus
YMR290C	-	88	63.333	ENSNGAG00000005624	Ddx18	76	58.465	Nannospalax_galili
YMR290C	-	97	59.761	ENSNLEG00000011769	DDX18	75	59.761	Nomascus_leucogenys
YMR290C	-	85	54.060	ENSNLEG00000034613	-	66	54.060	Nomascus_leucogenys
YMR290C	-	97	47.400	ENSNLEG00000032874	-	79	47.117	Nomascus_leucogenys
YMR290C	-	80	56.468	ENSNLEG00000027282	-	67	56.468	Nomascus_leucogenys
YMR290C	-	88	52.667	ENSNLEG00000034294	-	67	52.667	Nomascus_leucogenys
YMR290C	-	88	56.532	ENSMEUG00000011419	-	66	56.532	Notamacropus_eugenii
YMR290C	-	97	59.722	ENSOPRG00000001701	DDX18	76	59.722	Ochotona_princeps
YMR290C	-	97	60.040	ENSODEG00000007330	DDX18	76	60.040	Octodon_degus
YMR290C	-	90	65.342	ENSONIG00000007887	ddx18	69	65.342	Oreochromis_niloticus
YMR290C	-	88	40.991	ENSOCUG00000023972	-	87	40.991	Oryctolagus_cuniculus
YMR290C	-	97	58.824	ENSOCUG00000012586	-	76	58.824	Oryctolagus_cuniculus
YMR290C	-	92	64.440	ENSORLG00000008090	ddx18	77	61.122	Oryzias_latipes
YMR290C	-	88	42.411	ENSORLG00020006291	-	53	42.411	Oryzias_latipes_hni
YMR290C	-	92	64.440	ENSORLG00020022308	ddx18	77	61.122	Oryzias_latipes_hni
YMR290C	-	92	64.655	ENSORLG00015023091	ddx18	77	61.323	Oryzias_latipes_hsok
YMR290C	-	90	65.487	ENSOMEG00000017773	ddx18	79	59.961	Oryzias_melastigma
YMR290C	-	88	65.090	ENSOGAG00000007237	DDX18	66	65.090	Otolemur_garnettii
YMR290C	-	88	64.865	ENSOARG00000012040	DDX18	60	64.865	Ovis_aries
YMR290C	-	97	59.960	ENSPPAG00000033473	DDX18	75	59.960	Pan_paniscus
YMR290C	-	82	56.010	ENSPPAG00000030501	-	62	56.010	Pan_paniscus
YMR290C	-	88	64.865	ENSPPRG00000006406	DDX18	66	64.865	Panthera_pardus
YMR290C	-	88	64.865	ENSPTIG00000004868	DDX18	66	64.865	Panthera_tigris_altaica
YMR290C	-	97	59.960	ENSPTRG00000012391	DDX18	75	59.960	Pan_troglodytes
YMR290C	-	97	46.215	ENSPTRG00000045036	-	72	46.215	Pan_troglodytes
YMR290C	-	80	55.970	ENSPTRG00000047092	-	66	55.970	Pan_troglodytes
YMR290C	-	88	52.027	ENSPANG00000031669	-	70	50.676	Papio_anubis
YMR290C	-	88	64.640	ENSPANG00000019899	DDX18	66	64.640	Papio_anubis
YMR290C	-	97	62.298	ENSPKIG00000001118	ddx18	74	62.298	Paramormyrops_kingsleyae
YMR290C	-	96	59.960	ENSPSIG00000002977	DDX18	81	59.960	Pelodiscus_sinensis
YMR290C	-	96	61.122	ENSPMGG00000007162	ddx18	83	61.122	Periophthalmus_magnuspinnatus
YMR290C	-	88	65.011	ENSPEMG00000010438	-	67	65.011	Peromyscus_maniculatus_bairdii
YMR290C	-	73	66.398	ENSPMAG00000009147	ddx18	67	66.398	Petromyzon_marinus
YMR290C	-	97	60.317	ENSPCIG00000029015	DDX18	78	60.317	Phascolarctos_cinereus
YMR290C	-	87	65.831	ENSPFOG00000000969	ddx18	70	65.831	Poecilia_formosa
YMR290C	-	87	64.932	ENSPLAG00000005210	ddx18	83	64.932	Poecilia_latipinna
YMR290C	-	87	65.831	ENSPMEG00000014773	ddx18	70	65.831	Poecilia_mexicana
YMR290C	-	97	60.521	ENSPPYG00000012796	DDX18	80	60.521	Pongo_abelii
YMR290C	-	67	63.303	ENSPCAG00000010274	DDX18	50	63.303	Procavia_capensis
YMR290C	-	88	64.865	ENSPCOG00000016210	DDX18	66	64.865	Propithecus_coquereli
YMR290C	-	88	65.541	ENSPVAG00000006823	DDX18	66	65.541	Pteropus_vampyrus
YMR290C	-	90	65.044	ENSPNYG00000016437	ddx18	79	59.188	Pundamilia_nyererei
YMR290C	-	90	65.265	ENSPNAG00000024239	ddx18	68	65.265	Pygocentrus_nattereri
YMR290C	-	88	64.560	ENSRNOG00000025430	Ddx18	66	64.560	Rattus_norvegicus
YMR290C	-	88	64.865	ENSRBIG00000036313	DDX18	66	64.865	Rhinopithecus_bieti
YMR290C	-	85	43.124	ENSRBIG00000033443	-	61	43.124	Rhinopithecus_bieti
YMR290C	-	67	53.709	ENSRBIG00000038208	-	55	53.709	Rhinopithecus_bieti
YMR290C	-	67	50.445	ENSRROG00000030803	-	53	50.445	Rhinopithecus_roxellana
YMR290C	-	88	64.865	ENSRROG00000007370	DDX18	66	64.865	Rhinopithecus_roxellana
YMR290C	-	86	56.912	ENSSBOG00000034289	-	78	56.912	Saimiri_boliviensis_boliviensis
YMR290C	-	88	52.252	ENSSBOG00000035646	-	66	52.252	Saimiri_boliviensis_boliviensis
YMR290C	-	97	60.552	ENSSHAG00000018781	DDX18	78	60.552	Sarcophilus_harrisii
YMR290C	-	89	65.854	ENSSFOG00015022557	ddx18	71	62.626	Scleropages_formosus
YMR290C	-	88	65.766	ENSSMAG00000001652	ddx18	63	65.766	Scophthalmus_maximus
YMR290C	-	90	65.265	ENSSDUG00000005957	ddx18	67	65.265	Seriola_dumerili
YMR290C	-	90	65.265	ENSSLDG00000003692	ddx18	80	65.265	Seriola_lalandi_dorsalis
YMR290C	-	90	64.758	ENSSARG00000005248	DDX18	90	64.758	Sorex_araneus
YMR290C	-	88	64.865	ENSSPUG00000016098	DDX18	68	64.865	Sphenodon_punctatus
YMR290C	-	90	65.487	ENSSPAG00000023389	ddx18	68	65.487	Stegastes_partitus
YMR290C	-	88	64.640	ENSSSCG00000015712	DDX18	56	64.640	Sus_scrofa
YMR290C	-	88	42.411	ENSSSCG00000015011	-	54	42.411	Sus_scrofa
YMR290C	-	88	65.315	ENSTGUG00000011611	DDX18	82	65.315	Taeniopygia_guttata
YMR290C	-	99	59.615	ENSTRUG00000005649	ddx18	80	59.615	Takifugu_rubripes
YMR290C	-	90	65.265	ENSTNIG00000017834	ddx18	81	65.265	Tetraodon_nigroviridis
YMR290C	-	88	51.011	ENSTBEG00000016543	DDX18	70	51.011	Tupaia_belangeri
YMR290C	-	88	63.514	ENSTTRG00000015218	DDX18	66	63.514	Tursiops_truncatus
YMR290C	-	88	64.865	ENSUAMG00000016457	DDX18	72	64.865	Ursus_americanus
YMR290C	-	88	64.865	ENSUMAG00000013505	DDX18	66	64.865	Ursus_maritimus
YMR290C	-	54	65.809	ENSVPAG00000004214	-	54	65.809	Vicugna_pacos
YMR290C	-	59	60.000	ENSXETG00000020819	ddx18	63	60.000	Xenopus_tropicalis
YMR290C	-	87	60.137	ENSXCOG00000015361	ddx18	91	58.757	Xiphophorus_couchianus
YMR290C	-	87	65.831	ENSXMAG00000018003	ddx18	70	65.831	Xiphophorus_maculatus