EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YMR309C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3)%3B involved in the assembly of preinitiation complex and start codon selection%3B eIF3 is also involved in programmed stop codon readthrough
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2439 bases
Position: chrXIII:892988-895426
Accession: S000004926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YMR309C_mRNA	eIF-3c_N	PF05470.12	1.2e-206	1	2
YMR309C_mRNA	eIF-3c_N	PF05470.12	1.2e-206	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YMR309C_mRNA	-	2439	-	YMR309C_mRNA	812 (aa)	-	P32497

Gene Model

Click here to download YMR309C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YMR309C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YMR309C	-	81	30.699	ENSG00000205609	EIF3CL	77	31.365	Homo_sapiens
YMR309C	-	81	30.699	ENSG00000184110	EIF3C	77	31.365	Homo_sapiens
YMR309C	-	81	31.004	ENSAPOG00000024092	eif3c	77	31.183	Acanthochromis_polyacanthus
YMR309C	-	81	30.515	ENSAMEG00000015454	-	77	31.181	Ailuropoda_melanoleuca
YMR309C	-	66	31.362	ENSACIG00000015082	eif3c	75	31.183	Amphilophus_citrinellus
YMR309C	-	81	31.004	ENSAOCG00000021466	eif3c	74	31.183	Amphiprion_ocellaris
YMR309C	-	81	31.004	ENSAPEG00000010521	eif3c	74	31.183	Amphiprion_percula
YMR309C	-	81	31.004	ENSATEG00000019001	eif3c	72	31.004	Anabas_testudineus
YMR309C	-	81	30.741	ENSACAG00000005937	-	76	30.741	Anolis_carolinensis
YMR309C	-	81	30.699	ENSANAG00000020640	-	77	31.365	Aotus_nancymaae
YMR309C	-	66	31.183	ENSACLG00000009347	eif3c	75	31.183	Astatotilapia_calliptera
YMR309C	-	66	31.115	ENSACLG00000009322	eif3c	76	31.115	Astatotilapia_calliptera
YMR309C	-	81	31.541	ENSAMXG00000020949	eif3c	70	31.351	Astyanax_mexicanus
YMR309C	-	82	31.148	ENSBTAG00000006543	EIF3CL	77	31.365	Bos_taurus
YMR309C	-	81	30.699	ENSCJAG00000006341	-	75	31.365	Callithrix_jacchus
YMR309C	-	79	30.699	ENSCAFG00000017143	-	77	31.365	Canis_familiaris
YMR309C	-	81	30.699	ENSCAFG00020017587	-	77	31.365	Canis_lupus_dingo
YMR309C	-	81	30.699	ENSCHIG00000024795	-	77	31.365	Capra_hircus
YMR309C	-	65	31.605	ENSCAPG00000015887	-	62	31.605	Cavia_aperea
YMR309C	-	81	30.515	ENSCPOG00000007533	-	77	31.181	Cavia_porcellus
YMR309C	-	74	32.857	ENSCCAG00000027724	-	72	31.903	Cebus_capucinus
YMR309C	-	81	30.699	ENSCCAG00000034928	-	78	31.365	Cebus_capucinus
YMR309C	-	81	30.699	ENSCATG00000032673	-	77	31.365	Cercocebus_atys
YMR309C	-	81	30.699	ENSCLAG00000011094	-	70	31.365	Chinchilla_lanigera
YMR309C	-	81	30.699	ENSCSAG00000006297	-	77	31.365	Chlorocebus_sabaeus
YMR309C	-	81	30.699	ENSCANG00000033626	-	77	31.365	Colobus_angolensis_palliatus
YMR309C	-	81	30.483	ENSCGRG00001015265	EIF3C	70	31.157	Cricetulus_griseus_chok1gshd
YMR309C	-	83	30.466	ENSCSEG00000017770	eif3c	75	30.466	Cynoglossus_semilaevis
YMR309C	-	83	31.362	ENSCVAG00000005402	eif3c	73	31.227	Cyprinodon_variegatus
YMR309C	-	83	31.541	ENSDARG00000016443	eif3c	74	31.047	Danio_rerio
YMR309C	-	81	30.515	ENSDNOG00000031497	-	75	31.181	Dasypus_novemcinctus
YMR309C	-	81	30.699	ENSDORG00000016471	Eif3c	80	31.550	Dipodomys_ordii
YMR309C	-	72	31.447	ENSETEG00000013527	-	77	31.579	Echinops_telfairi
YMR309C	-	67	31.404	ENSEBUG00000001629	eif3c	61	31.228	Eptatretus_burgeri
YMR309C	-	81	30.515	ENSECAG00000008746	-	77	31.181	Equus_caballus
YMR309C	-	79	31.002	ENSEEUG00000006148	-	79	31.215	Erinaceus_europaeus
YMR309C	-	81	31.532	ENSELUG00000022257	eif3c	78	31.239	Esox_lucius
YMR309C	-	81	30.515	ENSFCAG00000015782	-	77	31.181	Felis_catus
YMR309C	-	81	30.515	ENSFDAG00000003588	-	77	31.181	Fukomys_damarensis
YMR309C	-	81	31.004	ENSFHEG00000014154	EIF3C	76	31.004	Fundulus_heteroclitus
YMR309C	-	81	30.853	ENSGMOG00000016885	eif3c	78	31.159	Gadus_morhua
YMR309C	-	81	31.047	ENSGACG00000007652	eif3c	72	30.853	Gasterosteus_aculeatus
YMR309C	-	66	32.258	ENSGAGG00000006666	-	63	31.465	Gopherus_agassizii
YMR309C	-	84	30.699	ENSGGOG00000026919	EIF3C	75	31.365	Gorilla_gorilla
YMR309C	-	81	30.515	ENSHGLG00000011445	EIF3C	75	31.181	Heterocephalus_glaber_female
YMR309C	-	81	30.515	ENSHGLG00100000217	EIF3C	75	31.181	Heterocephalus_glaber_male
YMR309C	-	81	30.645	ENSHCOG00000019694	eif3c	74	30.466	Hippocampus_comes
YMR309C	-	81	31.900	ENSIPUG00000016878	eif3c	72	31.900	Ictalurus_punctatus
YMR309C	-	81	30.331	ENSSTOG00000021278	-	77	30.996	Ictidomys_tridecemlineatus
YMR309C	-	81	31.127	ENSKMAG00000021662	eif3c	72	31.127	Kryptolebias_marmoratus
YMR309C	-	82	30.824	ENSLBEG00000023370	eif3c	78	30.824	Labrus_bergylta
YMR309C	-	81	31.900	ENSLACG00000000770	eif3c	74	31.900	Latimeria_chalumnae
YMR309C	-	81	30.699	ENSLAFG00000027426	-	77	31.550	Loxodonta_africana
YMR309C	-	81	30.699	ENSMFAG00000041930	-	77	31.365	Macaca_fascicularis
YMR309C	-	81	30.699	ENSMMUG00000011798	-	77	31.365	Macaca_mulatta
YMR309C	-	81	30.699	ENSMNEG00000023915	-	77	31.365	Macaca_nemestrina
YMR309C	-	81	30.699	ENSMLEG00000027529	-	77	31.365	Mandrillus_leucophaeus
YMR309C	-	81	31.004	ENSMAMG00000012512	eif3c	74	31.004	Mastacembelus_armatus
YMR309C	-	80	31.183	ENSMZEG00005013699	eif3c	75	31.183	Maylandia_zebra
YMR309C	-	66	31.115	ENSMZEG00005013685	eif3c	76	31.115	Maylandia_zebra
YMR309C	-	81	30.483	ENSMAUG00000010621	Eif3c	70	31.157	Mesocricetus_auratus
YMR309C	-	81	30.515	ENSMICG00000036748	-	77	31.181	Microcebus_murinus
YMR309C	-	65	31.123	ENSMOCG00000004204	Eif3c	56	31.157	Microtus_ochrogaster
YMR309C	-	82	30.965	ENSMODG00000015579	-	76	30.996	Monodelphis_domestica
YMR309C	-	81	31.541	ENSMALG00000008907	eif3c	78	31.541	Monopterus_albus
YMR309C	-	81	30.297	MGP_CAROLIEiJ_G0030451	Eif3c	70	30.970	Mus_caroli
YMR309C	-	81	30.297	ENSMUSG00000030738	Eif3c	70	30.970	Mus_musculus
YMR309C	-	81	30.112	MGP_PahariEiJ_G0013661	Eif3c	70	30.784	Mus_pahari
YMR309C	-	81	30.297	MGP_SPRETEiJ_G0031565	Eif3c	70	30.970	Mus_spretus
YMR309C	-	81	30.515	ENSMPUG00000012732	-	75	31.181	Mustela_putorius_furo
YMR309C	-	83	30.699	ENSMLUG00000015558	-	77	31.365	Myotis_lucifugus
YMR309C	-	81	30.669	ENSNGAG00000007177	-	73	31.343	Nannospalax_galili
YMR309C	-	81	30.515	ENSOPRG00000000931	-	77	31.181	Ochotona_princeps
YMR309C	-	81	30.699	ENSODEG00000013508	-	75	31.365	Octodon_degus
YMR309C	-	81	30.996	ENSOANG00000011410	-	70	30.996	Ornithorhynchus_anatinus
YMR309C	-	81	30.515	ENSOCUG00000022489	-	77	31.181	Oryctolagus_cuniculus
YMR309C	-	81	30.824	ENSORLG00000006318	eif3c	78	31.171	Oryzias_latipes
YMR309C	-	81	31.004	ENSORLG00020015713	eif3c	73	31.351	Oryzias_latipes_hni
YMR309C	-	81	31.004	ENSORLG00015013772	eif3c	73	31.171	Oryzias_latipes_hsok
YMR309C	-	81	30.645	ENSOMEG00000020450	eif3c	73	30.991	Oryzias_melastigma
YMR309C	-	81	30.699	ENSOGAG00000012737	-	77	31.365	Otolemur_garnettii
YMR309C	-	81	30.699	ENSOARG00000002892	-	77	31.365	Ovis_aries
YMR309C	-	81	30.515	ENSPPRG00000012336	-	77	31.181	Panthera_pardus
YMR309C	-	81	30.515	ENSPTIG00000011712	-	77	31.181	Panthera_tigris_altaica
YMR309C	-	81	30.699	ENSPANG00000021151	-	77	31.365	Papio_anubis
YMR309C	-	82	31.362	ENSPKIG00000002049	eif3c	77	30.064	Paramormyrops_kingsleyae
YMR309C	-	66	31.004	ENSPMGG00000005409	eif3c	75	31.004	Periophthalmus_magnuspinnatus
YMR309C	-	81	30.483	ENSPEMG00000010899	Eif3c	75	31.157	Peromyscus_maniculatus_bairdii
YMR309C	-	81	30.515	ENSPCIG00000025206	-	76	31.181	Phascolarctos_cinereus
YMR309C	-	81	31.047	ENSPFOG00000004476	eif3c	72	31.047	Poecilia_formosa
YMR309C	-	66	31.227	ENSPLAG00000017480	eif3c	75	31.227	Poecilia_latipinna
YMR309C	-	81	31.047	ENSPMEG00000019512	eif3c	76	31.227	Poecilia_mexicana
YMR309C	-	66	31.183	ENSPREG00000023139	eif3c	75	31.183	Poecilia_reticulata
YMR309C	-	65	30.826	ENSPCAG00000012710	-	86	31.455	Procavia_capensis
YMR309C	-	81	30.515	ENSPCOG00000019289	-	77	31.181	Propithecus_coquereli
YMR309C	-	81	30.331	ENSPVAG00000005804	-	77	30.996	Pteropus_vampyrus
YMR309C	-	81	32.079	ENSPNAG00000024040	eif3c	73	32.079	Pygocentrus_nattereri
YMR309C	-	81	30.297	ENSRNOG00000018761	Eif3c	70	30.970	Rattus_norvegicus
YMR309C	-	82	31.330	ENSRBIG00000044009	-	73	31.365	Rhinopithecus_bieti
YMR309C	-	81	30.699	ENSRROG00000043626	-	77	31.365	Rhinopithecus_roxellana
YMR309C	-	81	30.699	ENSSBOG00000032155	-	77	31.365	Saimiri_boliviensis_boliviensis
YMR309C	-	82	30.727	ENSSHAG00000011808	-	73	30.755	Sarcophilus_harrisii
YMR309C	-	85	30.794	ENSSFOG00015021823	eif3c	82	30.000	Scleropages_formosus
YMR309C	-	81	31.607	ENSSMAG00000016638	eif3c	74	31.429	Scophthalmus_maximus
YMR309C	-	81	31.004	ENSSDUG00000023117	eif3c	75	31.004	Seriola_dumerili
YMR309C	-	81	31.183	ENSSLDG00000009706	eif3c	78	31.004	Seriola_lalandi_dorsalis
YMR309C	-	79	30.645	ENSSPUG00000016470	-	74	30.726	Sphenodon_punctatus
YMR309C	-	81	30.824	ENSSPAG00000000426	eif3c	75	30.824	Stegastes_partitus
YMR309C	-	82	31.330	ENSSSCG00000034927	-	75	31.365	Sus_scrofa
YMR309C	-	81	30.824	ENSTRUG00000008951	eif3c	73	30.824	Takifugu_rubripes
YMR309C	-	85	30.514	ENSTNIG00000015210	eif3c	77	30.514	Tetraodon_nigroviridis
YMR309C	-	81	30.699	ENSTTRG00000005880	-	77	31.365	Tursiops_truncatus
YMR309C	-	65	31.148	ENSUAMG00000001127	-	93	33.025	Ursus_americanus
YMR309C	-	81	30.515	ENSUMAG00000010927	-	77	31.181	Ursus_maritimus
YMR309C	-	81	30.824	ENSXETG00000002941	eif3c	72	30.824	Xenopus_tropicalis
YMR309C	-	81	30.686	ENSXMAG00000013796	eif3c	73	30.686	Xiphophorus_maculatus