EuRBPDB

Description

Ensembl ID: YNL004W (Gene tree)
Gene ID: -
Gene Symbol: HRB1
Alias: TOM34
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1707
Position: chrXIV:622915-624621
Accession: S000004949
RBP type: canonical RBP
Summary: Poly(A+) RNA-binding protein%3B key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm%3B preference for intron-containing genes%3B similar to Npl3p%3B HRB1 has a paralog%2C GBP2%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL004W_mRNA	RRM_1	PF00076.22	1.5e-57	1	3
YNL004W_mRNA	RRM_1	PF00076.22	1.5e-57	2	3
YNL004W_mRNA	RRM_1	PF00076.22	1.5e-57	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL004W_mRNA	-	1365	-	YNL004W_mRNA	454 (aa)	-	P38922

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL004W	HRB1	61	42.254	ENSCING00000003046	-	61	42.254	Ciona_intestinalis
YNL004W	HRB1	59	40.741	ENSCSAVG00000000753	-	72	32.584	Ciona_savignyi