EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YNL061W (Gene tree)
Gene ID: -
Gene Symbol: NOP2
Alias: YNA1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1857
Position: chrXIV:510540-512396
Accession: S000005005
RBP type: canonical RBP
Summary: rRNA m5C methyltransferase%3B methylates cytosine at position 2870 of 25S rRNA%3B has an essential function independent of rRNA methylation%3B contains seven beta-strand methyltransferase motif%3B essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis%3B localized to the nucleolus%3B constituent of 66S pre-ribosomal particles%3B rRNA methylation defect and lethality are functionally complemented by human NOP2%2C a gene upregulated in cancer

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL061W_mRNA	Methyltr_RsmB-F	PF01189.17	3.4e-83	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL061W_mRNA	-	1857	-	YNL061W_mRNA	618 (aa)	-	P40991

Gene Model

Click here to download YNL061W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNL061W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL061W	NOP2	61	60.574	ENSACIG00000011803	nop2	54	59.949	Amphilophus_citrinellus
YNL061W	NOP2	60	58.649	ENSACAG00000006397	-	53	58.649	Anolis_carolinensis
YNL061W	NOP2	57	62.429	ENSAMXG00000018985	nop2	51	60.372	Astyanax_mexicanus
YNL061W	NOP2	72	48.322	WBGene00021073	nol-1	73	52.667	Caenorhabditis_elegans
YNL061W	NOP2	59	61.370	ENSCAPG00000011953	-	52	62.291	Cavia_aperea
YNL061W	NOP2	65	53.941	ENSCPBG00000027725	-	74	53.941	Chrysemys_picta_bellii
YNL061W	NOP2	68	51.887	ENSCING00000008548	-	61	58.146	Ciona_intestinalis
YNL061W	NOP2	60	61.351	ENSCANG00000038803	-	57	62.117	Colobus_angolensis_palliatus
YNL061W	NOP2	63	53.435	ENSCSEG00000020126	nop2	53	54.145	Cynoglossus_semilaevis
YNL061W	NOP2	61	60.000	ENSDARG00000043304	nop2	52	60.000	Danio_rerio
YNL061W	NOP2	53	64.220	ENSEBUG00000009820	nop2	60	64.220	Eptatretus_burgeri
YNL061W	NOP2	67	50.839	ENSEEUG00000011692	-	52	53.457	Erinaceus_europaeus
YNL061W	NOP2	61	57.289	ENSFALG00000004797	-	56	60.282	Ficedula_albicollis
YNL061W	NOP2	64	58.942	ENSFHEG00000014327	nop2	63	58.942	Fundulus_heteroclitus
YNL061W	NOP2	60	60.484	ENSGMOG00000011005	nop2	79	61.905	Gadus_morhua
YNL061W	NOP2	64	57.828	ENSGALG00000037807	-	68	60.218	Gallus_gallus
YNL061W	NOP2	64	57.071	ENSGACG00000010317	nop2	77	60.734	Gasterosteus_aculeatus
YNL061W	NOP2	60	57.568	ENSGAGG00000001438	-	54	57.568	Gopherus_agassizii
YNL061W	NOP2	64	58.186	ENSGGOG00000001926	NOP2	57	61.560	Gorilla_gorilla
YNL061W	NOP2	64	59.494	ENSHCOG00000017852	nop2	50	60.000	Hippocampus_comes
YNL061W	NOP2	68	56.938	ENSLBEG00000007281	nop2	53	61.022	Labrus_bergylta
YNL061W	NOP2	54	61.677	ENSLOCG00000007050	nop2	61	61.677	Lepisosteus_oculatus
YNL061W	NOP2	65	58.722	ENSMZEG00005017552	nop2	54	59.847	Maylandia_zebra
YNL061W	NOP2	70	52.527	ENSMGAG00000014082	-	76	60.000	Meleagris_gallopavo
YNL061W	NOP2	63	58.250	ENSMODG00000018077	-	51	60.212	Monodelphis_domestica
YNL061W	NOP2	66	56.863	ENSNLEG00000004242	-	57	61.453	Nomascus_leucogenys
YNL061W	NOP2	60	60.811	ENSMEUG00000015287	-	55	60.811	Notamacropus_eugenii
YNL061W	NOP2	62	59.645	ENSONIG00000012896	nop2	54	59.645	Oreochromis_niloticus
YNL061W	NOP2	60	53.723	ENSOMEG00000012751	nop2	53	54.848	Oryzias_melastigma
YNL061W	NOP2	61	60.367	ENSPANG00000024426	-	58	61.475	Papio_anubis
YNL061W	NOP2	63	57.398	ENSPSIG00000016127	-	63	57.825	Pelodiscus_sinensis
YNL061W	NOP2	63	58.015	ENSPMAG00000009402	nop2	89	61.345	Petromyzon_marinus
YNL061W	NOP2	63	58.929	ENSPFOG00000013054	nop2	50	62.429	Poecilia_formosa
YNL061W	NOP2	57	62.147	ENSPREG00000010428	nop2	51	62.147	Poecilia_reticulata
YNL061W	NOP2	64	58.186	ENSRROG00000041019	-	57	61.732	Rhinopithecus_roxellana
YNL061W	NOP2	63	59.079	ENSSHAG00000015028	-	56	62.254	Sarcophilus_harrisii
YNL061W	NOP2	76	50.955	ENSSPUG00000015240	-	53	60.845	Sphenodon_punctatus
YNL061W	NOP2	62	60.519	ENSSSCG00000000696	-	54	61.622	Sus_scrofa
YNL061W	NOP2	57	61.127	ENSTGUG00000013336	-	60	61.127	Taeniopygia_guttata
YNL061W	NOP2	60	60.541	ENSTNIG00000008046	nop2	55	61.972	Tetraodon_nigroviridis
YNL061W	NOP2	64	56.709	ENSXETG00000011515	nop2	64	58.537	Xenopus_tropicalis
YNL061W	NOP2	67	57.074	ENSXMAG00000011483	nop2	52	59.137	Xiphophorus_maculatus