EuRBPDB

Description

Ensembl ID: YNL093W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 663
Position: chrXIV:449868-450530
Accession: S000005037
RBP type: canonical RBP
Summary: Stress-induced Rab family GTPase%3B required for vacuolar protein sorting and endocytosis%3B involved in ionic stress tolerance%3B similar to Vps21p and Ypt52p%3B functional homolog of Vps21p%3B mammalian Rab5 homolog%3B YPT53 has a paralog%2C VPS21%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL093W_mRNA	MMR_HSR1	PF01926.23	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL093W_mRNA	-	663	-	YNL093W_mRNA	220 (aa)	-	P36019

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YNL093W	-	95	56.938	YOR089C	VPS21	97	56.938
YNL093W	-	77	53.125	YKR014C	-	82	53.125
YNL093W	-	76	37.126	YFL005W	SEC4	74	37.126
YNL093W	-	89	33.663	YML001W	YPT7	95	33.663
YNL093W	-	75	37.576	YER031C	YPT31	71	37.576
YNL093W	-	76	35.465	YLR262C	-	76	35.465
YNL093W	-	77	43.429	YBR264C	-	83	43.429
YNL093W	-	74	36.810	YGL210W	-	71	36.810

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL093W	-	81	36.872	ENSAPOG00000011363	-	76	36.872	Acanthochromis_polyacanthus
YNL093W	-	77	42.775	ENSEBUG00000012680	-	70	42.775	Eptatretus_burgeri
YNL093W	-	94	45.146	ENSEBUG00000015845	-	89	45.146	Eptatretus_burgeri
YNL093W	-	80	42.697	ENSPMGG00000019723	-	86	42.697	Periophthalmus_magnuspinnatus
YNL093W	-	76	34.524	ENSPMAG00000001403	-	81	34.524	Petromyzon_marinus
YNL093W	-	82	37.158	ENSTNIG00000017844	-	92	37.158	Tetraodon_nigroviridis