EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YNL112W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2643
Position: chrXIV:413639-416281
Accession: S000005056
RBP type: canonical RBP
Summary: ATP-dependent RNA helicase of the DEAD-box protein family%3B has strong preference for dsRNA%3B interacts with YRA1%3B required for assembly of Yra1p%2C Nab2p and Mex67p onto mRNA and formation of nuclear mRNP%3B involved in mRNA decay and rRNA processing%3B may be involved in suppression of transcription from cryptic initiation sites

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL112W_mRNA	DEAD	PF00270.29	1.9e-49	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL112W_mRNA	-	1641	-	YNL112W_mRNA	546 (aa)	-	P24783

Gene Model

Click here to download YNL112W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNL112W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YNL112W	-	60	30.645	YDR194C	-	51	30.986
YNL112W	-	65	33.875	YHR169W	-	83	33.693
YNL112W	-	72	34.314	YGL171W	-	71	34.314
YNL112W	-	76	44.626	YOR204W	DED1	66	45.636
YNL112W	-	66	36.979	YDR243C	-	65	36.979
YNL112W	-	70	32.808	YJL138C	TIF2	94	32.808
YNL112W	-	65	30.978	YOR046C	DBP5	73	30.978
YNL112W	-	70	32.808	YKR059W	TIF1	94	32.808
YNL112W	-	63	30.807	YBR142W	-	52	30.807
YNL112W	-	97	40.506	YPL119C	DBP1	71	43.567
YNL112W	-	65	36.944	YHR065C	-	81	34.368
YNL112W	-	64	30.194	YDL084W	-	79	30.278
YNL112W	-	79	43.964	YGL078C	-	80	44.706
YNL112W	-	66	33.962	YMR290C	-	71	33.962
YNL112W	-	70	32.124	YDR021W	-	92	32.124
YNL112W	-	65	33.060	YJL033W	HCA4	51	32.494
YNL112W	-	64	31.909	YDL160C	-	67	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL112W	-	81	61.451	ENSG00000100201	DDX17	71	70.000	Homo_sapiens
YNL112W	-	84	59.913	ENSAPOG00000017303	si:dkey-156n14.5	73	59.119	Acanthochromis_polyacanthus
YNL112W	-	81	61.451	ENSAMEG00000010601	DDX17	65	59.579	Ailuropoda_melanoleuca
YNL112W	-	82	60.000	ENSAOCG00000004874	si:dkey-156n14.5	73	58.910	Amphiprion_ocellaris
YNL112W	-	82	60.000	ENSAPEG00000018317	si:dkey-156n14.5	73	58.910	Amphiprion_percula
YNL112W	-	81	60.682	ENSATEG00000021733	si:dkey-156n14.5	76	58.316	Anabas_testudineus
YNL112W	-	83	60.440	ENSAPLG00000014334	-	73	61.224	Anas_platyrhynchos
YNL112W	-	74	62.376	ENSANAG00000035052	DDX17	65	62.376	Aotus_nancymaae
YNL112W	-	84	60.394	ENSACLG00000015882	DDX17	70	61.364	Astatotilapia_calliptera
YNL112W	-	82	60.889	ENSACLG00000015887	si:dkey-156n14.5	73	59.748	Astatotilapia_calliptera
YNL112W	-	81	61.451	ENSBTAG00000009887	DDX17	96	60.988	Bos_taurus
YNL112W	-	85	53.463	WBGene00010260	ddx-17	87	50.806	Caenorhabditis_elegans
YNL112W	-	82	60.667	ENSCJAG00000011797	DDX17	87	63.271	Callithrix_jacchus
YNL112W	-	81	61.451	ENSCAFG00000001395	DDX17	72	59.619	Canis_familiaris
YNL112W	-	87	59.244	ENSCAFG00020002867	DDX17	96	60.988	Canis_lupus_dingo
YNL112W	-	81	61.451	ENSCHIG00000021332	DDX17	96	60.988	Capra_hircus
YNL112W	-	83	60.349	ENSTSYG00000001303	DDX17	92	63.271	Carlito_syrichta
YNL112W	-	81	61.451	ENSCPOG00000011790	DDX17	96	60.988	Cavia_porcellus
YNL112W	-	81	61.451	ENSCCAG00000024116	DDX17	90	63.271	Cebus_capucinus
YNL112W	-	82	60.667	ENSCATG00000035701	DDX17	96	60.988	Cercocebus_atys
YNL112W	-	81	61.451	ENSCLAG00000017294	DDX17	96	60.988	Chinchilla_lanigera
YNL112W	-	81	61.451	ENSCSAG00000006649	DDX17	72	59.619	Chlorocebus_sabaeus
YNL112W	-	81	61.224	ENSCHOG00000001931	DDX17	65	59.368	Choloepus_hoffmanni
YNL112W	-	88	54.890	ENSCING00000004147	-	87	55.888	Ciona_intestinalis
YNL112W	-	77	49.533	ENSCING00000008750	-	75	49.299	Ciona_intestinalis
YNL112W	-	82	60.667	ENSCANG00000002348	DDX17	96	60.988	Colobus_angolensis_palliatus
YNL112W	-	81	61.451	ENSCGRG00001023050	Ddx17	72	59.408	Cricetulus_griseus_chok1gshd
YNL112W	-	81	61.451	ENSCGRG00000007756	Ddx17	72	59.408	Cricetulus_griseus_crigri
YNL112W	-	71	61.440	ENSCSEG00000011351	si:dkey-156n14.5	99	59.662	Cynoglossus_semilaevis
YNL112W	-	80	60.870	ENSCVAG00000010921	si:dkey-156n14.5	73	59.205	Cyprinodon_variegatus
YNL112W	-	80	61.149	ENSDARG00000010873	DDX17	99	59.658	Danio_rerio
YNL112W	-	81	61.451	ENSDNOG00000006499	DDX17	65	59.579	Dasypus_novemcinctus
YNL112W	-	81	61.451	ENSDORG00000003358	Ddx17	72	59.619	Dipodomys_ordii
YNL112W	-	82	60.667	FBgn0035720	CG10077	78	62.366	Drosophila_melanogaster
YNL112W	-	81	61.451	ENSEASG00005018767	DDX17	72	59.619	Equus_asinus_asinus
YNL112W	-	81	61.451	ENSECAG00000025110	DDX17	96	60.988	Equus_caballus
YNL112W	-	81	61.451	ENSFCAG00000031570	DDX17	96	60.988	Felis_catus
YNL112W	-	82	60.619	ENSFALG00000012560	DDX17	60	61.224	Ficedula_albicollis
YNL112W	-	82	60.667	ENSFDAG00000009967	DDX17	69	61.451	Fukomys_damarensis
YNL112W	-	82	60.619	ENSGALG00000037360	DDX17	67	61.224	Gallus_gallus
YNL112W	-	84	51.515	ENSGACG00000019151	si:dkey-156n14.5	70	52.262	Gasterosteus_aculeatus
YNL112W	-	82	60.667	ENSGGOG00000008309	DDX17	96	60.988	Gorilla_gorilla
YNL112W	-	84	60.394	ENSHBUG00000022268	DDX17	70	61.364	Haplochromis_burtoni
YNL112W	-	82	60.667	ENSHBUG00000021303	si:dkey-156n14.5	73	59.539	Haplochromis_burtoni
YNL112W	-	81	61.451	ENSHGLG00000012568	DDX17	65	59.368	Heterocephalus_glaber_female
YNL112W	-	81	61.451	ENSHGLG00100011291	DDX17	96	60.741	Heterocephalus_glaber_male
YNL112W	-	84	59.868	ENSIPUG00000015768	si:dkey-156n14.5	92	62.903	Ictalurus_punctatus
YNL112W	-	81	61.451	ENSSTOG00000013699	DDX17	65	59.579	Ictidomys_tridecemlineatus
YNL112W	-	81	61.451	ENSJJAG00000011350	Ddx17	65	59.368	Jaculus_jaculus
YNL112W	-	82	60.667	ENSMFAG00000046051	DDX17	96	60.988	Macaca_fascicularis
YNL112W	-	81	61.451	ENSMMUG00000004304	DDX17	96	60.988	Macaca_mulatta
YNL112W	-	82	60.667	ENSMNEG00000022218	DDX17	96	60.988	Macaca_nemestrina
YNL112W	-	82	60.667	ENSMLEG00000029141	DDX17	89	63.271	Mandrillus_leucophaeus
YNL112W	-	80	60.586	ENSMAMG00000008427	si:dkey-156n14.5	73	59.442	Mastacembelus_armatus
YNL112W	-	82	60.889	ENSMZEG00005009937	si:dkey-156n14.5	73	59.748	Maylandia_zebra
YNL112W	-	83	60.440	ENSMGAG00000012423	DDX17	86	67.416	Meleagris_gallopavo
YNL112W	-	64	57.102	ENSMAUG00000020476	Ddx17	92	54.948	Mesocricetus_auratus
YNL112W	-	81	61.451	ENSMICG00000011601	DDX17	96	60.988	Microcebus_murinus
YNL112W	-	81	59.594	ENSMOCG00000010769	Ddx17	65	57.652	Microtus_ochrogaster
YNL112W	-	71	62.211	ENSMMOG00000002806	-	89	63.760	Mola_mola
YNL112W	-	75	60.391	ENSMMOG00000007416	si:dkey-156n14.5	96	59.662	Mola_mola
YNL112W	-	81	61.451	ENSMODG00000009681	DDX17	76	59.619	Monodelphis_domestica
YNL112W	-	81	60.227	ENSMALG00000002485	si:dkey-156n14.5	74	58.491	Monopterus_albus
YNL112W	-	81	61.451	MGP_CAROLIEiJ_G0020017	Ddx17	72	59.408	Mus_caroli
YNL112W	-	81	61.451	ENSMUSG00000055065	Ddx17	99	60.741	Mus_musculus
YNL112W	-	81	61.451	MGP_PahariEiJ_G0020019	Ddx17	72	59.408	Mus_pahari
YNL112W	-	81	61.451	MGP_SPRETEiJ_G0020915	Ddx17	72	59.408	Mus_spretus
YNL112W	-	81	61.451	ENSMPUG00000013125	DDX17	72	59.619	Mustela_putorius_furo
YNL112W	-	84	59.956	ENSMLUG00000013151	DDX17	68	61.224	Myotis_lucifugus
YNL112W	-	81	61.451	ENSNGAG00000004001	Ddx17	72	59.408	Nannospalax_galili
YNL112W	-	73	61.250	ENSNBRG00000002592	DDX17	94	60.291	Neolamprologus_brichardi
YNL112W	-	74	60.396	ENSNBRG00000020059	-	99	59.165	Neolamprologus_brichardi
YNL112W	-	82	60.667	ENSNLEG00000015117	DDX17	89	63.271	Nomascus_leucogenys
YNL112W	-	70	62.304	ENSMEUG00000009627	DDX17	59	63.271	Notamacropus_eugenii
YNL112W	-	81	61.451	ENSOPRG00000014734	DDX17	65	59.579	Ochotona_princeps
YNL112W	-	81	57.753	ENSODEG00000013118	DDX17	65	56.159	Octodon_degus
YNL112W	-	82	60.754	ENSONIG00000018880	si:dkey-156n14.5	98	61.369	Oreochromis_niloticus
YNL112W	-	81	61.451	ENSOCUG00000004982	DDX17	72	59.619	Oryctolagus_cuniculus
YNL112W	-	82	60.440	ENSORLG00000013685	si:dkey-156n14.5	73	59.034	Oryzias_latipes
YNL112W	-	82	60.440	ENSORLG00020021743	si:dkey-156n14.5	73	59.034	Oryzias_latipes_hni
YNL112W	-	82	60.307	ENSORLG00015022548	si:dkey-156n14.5	73	58.910	Oryzias_latipes_hsok
YNL112W	-	82	60.220	ENSOMEG00000009515	si:dkey-156n14.5	73	58.824	Oryzias_melastigma
YNL112W	-	81	61.451	ENSOGAG00000001539	DDX17	72	59.619	Otolemur_garnettii
YNL112W	-	82	60.667	ENSOARG00000015489	DDX17	69	61.451	Ovis_aries
YNL112W	-	82	60.667	ENSPPAG00000042301	DDX17	96	60.988	Pan_paniscus
YNL112W	-	81	61.451	ENSPPRG00000008444	DDX17	63	59.579	Panthera_pardus
YNL112W	-	82	60.667	ENSPTIG00000008733	DDX17	90	63.271	Panthera_tigris_altaica
YNL112W	-	82	60.667	ENSPTRG00000014369	DDX17	96	60.988	Pan_troglodytes
YNL112W	-	82	60.667	ENSPANG00000015143	DDX17	96	60.988	Papio_anubis
YNL112W	-	84	60.832	ENSPKIG00000007831	DDX17	66	61.712	Paramormyrops_kingsleyae
YNL112W	-	83	60.352	ENSPKIG00000002575	si:dkey-156n14.5	66	60.532	Paramormyrops_kingsleyae
YNL112W	-	81	61.451	ENSPEMG00000021115	Ddx17	72	59.408	Peromyscus_maniculatus_bairdii
YNL112W	-	81	61.451	ENSPCIG00000001652	DDX17	72	59.619	Phascolarctos_cinereus
YNL112W	-	81	60.682	ENSPREG00000000506	si:dkey-156n14.5	74	58.884	Poecilia_reticulata
YNL112W	-	81	61.451	ENSPPYG00000011821	DDX17	72	59.619	Pongo_abelii
YNL112W	-	81	61.451	ENSPCAG00000011672	DDX17	65	59.579	Procavia_capensis
YNL112W	-	82	60.667	ENSPCOG00000014360	DDX17	89	63.271	Propithecus_coquereli
YNL112W	-	81	61.451	ENSPVAG00000010133	DDX17	65	59.579	Pteropus_vampyrus
YNL112W	-	84	60.394	ENSPNYG00000019669	-	70	61.364	Pundamilia_nyererei
YNL112W	-	82	60.667	ENSPNYG00000005694	si:dkey-156n14.5	73	59.539	Pundamilia_nyererei
YNL112W	-	92	55.019	ENSPNAG00000029948	si:dkey-156n14.5	89	63.488	Pygocentrus_nattereri
YNL112W	-	81	61.451	ENSRNOG00000051170	Ddx17	72	59.408	Rattus_norvegicus
YNL112W	-	82	60.667	ENSRBIG00000031437	DDX17	93	60.938	Rhinopithecus_bieti
YNL112W	-	81	61.451	ENSRROG00000045378	DDX17	96	60.988	Rhinopithecus_roxellana
YNL112W	-	81	52.822	ENSSBOG00000024547	DDX17	63	51.572	Saimiri_boliviensis_boliviensis
YNL112W	-	82	60.532	ENSSHAG00000004578	DDX17	69	61.312	Sarcophilus_harrisii
YNL112W	-	84	60.832	ENSSFOG00015012308	ddx17	66	61.712	Scleropages_formosus
YNL112W	-	82	58.681	ENSSMAG00000007794	si:dkey-156n14.5	67	59.545	Scophthalmus_maximus
YNL112W	-	83	60.573	ENSSMAG00000005509	DDX17	67	62.069	Scophthalmus_maximus
YNL112W	-	71	62.725	ENSSPAG00000019808	-	90	64.850	Stegastes_partitus
YNL112W	-	81	60.682	ENSSPAG00000017130	si:dkey-156n14.5	73	58.910	Stegastes_partitus
YNL112W	-	81	61.451	ENSSSCG00000000104	DDX17	96	60.988	Sus_scrofa
YNL112W	-	82	60.619	ENSTGUG00000010391	DDX17	67	61.224	Taeniopygia_guttata
YNL112W	-	82	59.382	ENSTRUG00000021931	si:dkey-156n14.5	74	58.105	Takifugu_rubripes
YNL112W	-	82	59.333	ENSTTRG00000005623	DDX17	69	60.091	Tursiops_truncatus
YNL112W	-	90	57.455	ENSUAMG00000007290	DDX17	89	61.451	Ursus_americanus
YNL112W	-	74	62.779	ENSVPAG00000001476	DDX17	55	62.779	Vicugna_pacos
YNL112W	-	68	63.271	ENSVVUG00000022762	DDX17	96	60.988	Vulpes_vulpes
YNL112W	-	85	59.529	ENSXETG00000006900	ddx17	71	61.364	Xenopus_tropicalis
YNL112W	-	81	60.455	ENSXMAG00000005078	si:dkey-156n14.5	73	58.787	Xiphophorus_maculatus