EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YNL147W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 444
Position: chrXIV:350940-351383
Accession: S000005091
RBP type: canonical RBP
Summary: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA%3B protein abundance increases and forms cytoplasmic foci in response to DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL147W_mRNA	LSM	PF01423.22	1.4e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL147W_mRNA	-	348	-	YNL147W_mRNA	115 (aa)	-	P53905

Gene Model

Click here to download YNL147W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNL147W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YNL147W	-	74	33.721	YLR438C-A	LSM3	92	33.721
YNL147W	-	69	40.000	YFL017W-A	SMX2	92	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL147W	-	80	47.826	ENSG00000130332	LSM7	86	47.826	Homo_sapiens
YNL147W	-	75	47.674	ENSAPOG00000015573	lsm7	77	47.826	Acanthochromis_polyacanthus
YNL147W	-	80	48.913	ENSAMEG00000005484	LSM7	86	48.913	Ailuropoda_melanoleuca
YNL147W	-	77	48.315	ENSACIG00000006498	lsm7	68	48.315	Amphilophus_citrinellus
YNL147W	-	75	47.674	ENSAOCG00000001077	lsm7	86	45.098	Amphiprion_ocellaris
YNL147W	-	77	48.315	ENSAPEG00000024447	lsm7	86	45.098	Amphiprion_percula
YNL147W	-	77	48.315	ENSAPEG00000000694	lsm7	83	48.315	Amphiprion_percula
YNL147W	-	77	48.315	ENSATEG00000008557	lsm7	83	48.315	Anabas_testudineus
YNL147W	-	80	47.826	ENSANAG00000037196	-	86	47.826	Aotus_nancymaae
YNL147W	-	77	43.820	ENSANAG00000022222	-	82	43.820	Aotus_nancymaae
YNL147W	-	77	48.315	ENSACLG00000021021	lsm7	83	48.315	Astatotilapia_calliptera
YNL147W	-	77	48.315	ENSAMXG00000037622	lsm7	83	48.315	Astyanax_mexicanus
YNL147W	-	80	47.826	ENSBTAG00000004521	LSM7	86	47.826	Bos_taurus
YNL147W	-	74	44.706	WBGene00003081	lsm-7	79	44.706	Caenorhabditis_elegans
YNL147W	-	87	48.000	ENSCAFG00000019409	LSM7	90	48.000	Canis_familiaris
YNL147W	-	92	46.226	ENSCAFG00020018168	LSM7	63	49.438	Canis_lupus_dingo
YNL147W	-	80	47.826	ENSCHIG00000023663	LSM7	86	47.826	Capra_hircus
YNL147W	-	54	45.161	ENSCAPG00000014534	LSM7	83	45.161	Cavia_aperea
YNL147W	-	80	47.826	ENSCPOG00000014025	LSM7	88	47.826	Cavia_porcellus
YNL147W	-	80	47.826	ENSCCAG00000035456	LSM7	87	47.826	Cebus_capucinus
YNL147W	-	80	47.826	ENSCATG00000023543	LSM7	86	47.826	Cercocebus_atys
YNL147W	-	80	47.826	ENSCLAG00000011635	LSM7	86	47.826	Chinchilla_lanigera
YNL147W	-	80	47.826	ENSCSAG00000011599	LSM7	86	47.826	Chlorocebus_sabaeus
YNL147W	-	54	46.774	ENSCPBG00000021317	LSM7	63	46.774	Chrysemys_picta_bellii
YNL147W	-	74	51.765	ENSCING00000022134	-	83	51.765	Ciona_intestinalis
YNL147W	-	80	47.826	ENSCANG00000035525	LSM7	86	47.826	Colobus_angolensis_palliatus
YNL147W	-	80	47.826	ENSCGRG00001000807	-	86	47.826	Cricetulus_griseus_chok1gshd
YNL147W	-	73	47.619	ENSCGRG00001016005	-	84	47.619	Cricetulus_griseus_chok1gshd
YNL147W	-	73	47.619	ENSCGRG00000006821	-	84	47.619	Cricetulus_griseus_crigri
YNL147W	-	80	47.826	ENSCGRG00000014355	-	86	47.826	Cricetulus_griseus_crigri
YNL147W	-	77	48.315	ENSCSEG00000014900	lsm7	74	47.826	Cynoglossus_semilaevis
YNL147W	-	80	47.826	ENSCVAG00000021091	lsm7	82	47.826	Cyprinodon_variegatus
YNL147W	-	77	48.315	ENSDARG00000058328	lsm7	83	48.315	Danio_rerio
YNL147W	-	80	48.913	ENSDORG00000024460	Lsm7	87	48.913	Dipodomys_ordii
YNL147W	-	74	49.412	FBgn0261068	LSm7	75	49.412	Drosophila_melanogaster
YNL147W	-	77	47.191	ENSETEG00000012788	LSM7	84	47.191	Echinops_telfairi
YNL147W	-	77	47.191	ENSEBUG00000016992	lsm7	83	47.191	Eptatretus_burgeri
YNL147W	-	68	39.744	ENSEBUG00000010470	-	71	39.744	Eptatretus_burgeri
YNL147W	-	75	46.512	ENSECAG00000001440	LSM7	55	47.191	Equus_caballus
YNL147W	-	80	48.913	ENSFCAG00000003445	LSM7	86	48.913	Felis_catus
YNL147W	-	77	49.438	ENSFALG00000011912	LSM7	85	49.438	Ficedula_albicollis
YNL147W	-	77	48.315	ENSFDAG00000007661	LSM7	90	48.315	Fukomys_damarensis
YNL147W	-	74	48.235	ENSFHEG00000006349	lsm7	79	47.826	Fundulus_heteroclitus
YNL147W	-	74	50.588	ENSGMOG00000013320	lsm7	80	50.588	Gadus_morhua
YNL147W	-	77	48.315	ENSGAFG00000013902	lsm7	83	48.315	Gambusia_affinis
YNL147W	-	77	48.315	ENSGACG00000010390	lsm7	83	48.315	Gasterosteus_aculeatus
YNL147W	-	80	47.826	ENSGGOG00000010172	LSM7	86	47.826	Gorilla_gorilla
YNL147W	-	77	48.315	ENSHBUG00000004616	lsm7	83	48.315	Haplochromis_burtoni
YNL147W	-	80	47.826	ENSHGLG00000010587	LSM7	86	47.826	Heterocephalus_glaber_female
YNL147W	-	80	47.826	ENSHGLG00100000852	LSM7	86	47.826	Heterocephalus_glaber_male
YNL147W	-	77	48.315	ENSHCOG00000020252	lsm7	85	48.315	Hippocampus_comes
YNL147W	-	77	48.315	ENSIPUG00000024724	lsm7	83	48.315	Ictalurus_punctatus
YNL147W	-	87	47.000	ENSSTOG00000028372	LSM7	89	47.000	Ictidomys_tridecemlineatus
YNL147W	-	88	44.554	ENSJJAG00000001936	Lsm7	90	44.554	Jaculus_jaculus
YNL147W	-	77	48.315	ENSKMAG00000022151	lsm7	83	48.315	Kryptolebias_marmoratus
YNL147W	-	77	48.315	ENSLBEG00000005203	lsm7	83	48.315	Labrus_bergylta
YNL147W	-	75	47.674	ENSLACG00000015700	LSM7	86	47.826	Latimeria_chalumnae
YNL147W	-	77	47.191	ENSLOCG00000004356	lsm7	83	47.191	Lepisosteus_oculatus
YNL147W	-	80	47.826	ENSLAFG00000029302	LSM7	86	47.826	Loxodonta_africana
YNL147W	-	80	47.826	ENSMFAG00000044572	LSM7	86	47.826	Macaca_fascicularis
YNL147W	-	80	47.826	ENSMMUG00000000452	LSM7	87	47.826	Macaca_mulatta
YNL147W	-	80	47.826	ENSMNEG00000004393	LSM7	86	47.826	Macaca_nemestrina
YNL147W	-	80	47.826	ENSMLEG00000030852	LSM7	88	47.826	Mandrillus_leucophaeus
YNL147W	-	77	48.315	ENSMAMG00000005410	lsm7	83	48.315	Mastacembelus_armatus
YNL147W	-	77	48.315	ENSMZEG00005028055	lsm7	83	48.315	Maylandia_zebra
YNL147W	-	75	48.837	ENSMGAG00000000750	LSM7	74	49.438	Meleagris_gallopavo
YNL147W	-	80	47.826	ENSMAUG00000009276	Lsm7	86	47.826	Mesocricetus_auratus
YNL147W	-	80	47.826	ENSMICG00000028619	-	86	47.826	Microcebus_murinus
YNL147W	-	80	47.826	ENSMICG00000009988	-	86	47.826	Microcebus_murinus
YNL147W	-	80	47.826	ENSMOCG00000016925	Lsm7	86	47.826	Microtus_ochrogaster
YNL147W	-	77	48.315	ENSMMOG00000019645	lsm7	82	48.315	Mola_mola
YNL147W	-	77	48.315	ENSMODG00000004722	LSM7	83	48.315	Monodelphis_domestica
YNL147W	-	77	48.315	ENSMALG00000014511	lsm7	66	48.315	Monopterus_albus
YNL147W	-	80	47.826	MGP_CAROLIEiJ_G0015607	Lsm7	86	47.826	Mus_caroli
YNL147W	-	80	47.826	ENSMUSG00000035215	Lsm7	86	47.826	Mus_musculus
YNL147W	-	80	47.826	MGP_PahariEiJ_G0031020	Lsm7	86	47.826	Mus_pahari
YNL147W	-	80	47.826	MGP_SPRETEiJ_G0016425	Lsm7	86	47.826	Mus_spretus
YNL147W	-	80	47.826	ENSMLUG00000013097	-	86	47.826	Myotis_lucifugus
YNL147W	-	77	44.944	ENSMLUG00000024002	-	80	44.944	Myotis_lucifugus
YNL147W	-	80	46.739	ENSNGAG00000021637	Lsm7	86	46.739	Nannospalax_galili
YNL147W	-	77	48.315	ENSNBRG00000015770	lsm7	74	48.315	Neolamprologus_brichardi
YNL147W	-	76	48.276	ENSNBRG00000001237	-	69	48.315	Neolamprologus_brichardi
YNL147W	-	80	47.826	ENSNLEG00000002265	LSM7	86	47.826	Nomascus_leucogenys
YNL147W	-	80	47.826	ENSODEG00000013590	-	86	47.826	Octodon_degus
YNL147W	-	80	41.304	ENSODEG00000018769	-	86	41.304	Octodon_degus
YNL147W	-	77	38.636	ENSODEG00000008190	-	81	38.636	Octodon_degus
YNL147W	-	77	48.315	ENSONIG00000001801	lsm7	74	48.315	Oreochromis_niloticus
YNL147W	-	80	47.826	ENSORLG00000023951	lsm7	83	48.315	Oryzias_latipes
YNL147W	-	77	48.315	ENSORLG00020022226	lsm7	83	48.315	Oryzias_latipes_hni
YNL147W	-	77	48.315	ENSORLG00015020044	lsm7	80	48.315	Oryzias_latipes_hsok
YNL147W	-	77	48.315	ENSOMEG00000012806	lsm7	83	48.315	Oryzias_melastigma
YNL147W	-	80	47.826	ENSOGAG00000000144	-	87	47.826	Otolemur_garnettii
YNL147W	-	77	40.449	ENSOGAG00000024373	-	84	40.449	Otolemur_garnettii
YNL147W	-	80	47.826	ENSOARG00000014013	LSM7	86	47.826	Ovis_aries
YNL147W	-	80	47.826	ENSPPAG00000026500	LSM7	86	47.826	Pan_paniscus
YNL147W	-	80	48.913	ENSPPRG00000008624	LSM7	86	48.913	Panthera_pardus
YNL147W	-	75	48.837	ENSPTIG00000016252	LSM7	86	48.913	Panthera_tigris_altaica
YNL147W	-	80	47.826	ENSPTRG00000010233	LSM7	86	47.826	Pan_troglodytes
YNL147W	-	80	47.826	ENSPANG00000020668	LSM7	86	47.826	Papio_anubis
YNL147W	-	77	48.315	ENSPKIG00000011325	lsm7	83	48.315	Paramormyrops_kingsleyae
YNL147W	-	75	48.837	ENSPSIG00000017149	LSM7	75	49.438	Pelodiscus_sinensis
YNL147W	-	77	48.315	ENSPMGG00000006498	lsm7	83	48.315	Periophthalmus_magnuspinnatus
YNL147W	-	77	48.315	ENSPCIG00000030454	LSM7	84	48.315	Phascolarctos_cinereus
YNL147W	-	80	47.826	ENSPFOG00000012467	lsm7	79	47.826	Poecilia_formosa
YNL147W	-	80	47.826	ENSPLAG00000000252	lsm7	80	48.315	Poecilia_latipinna
YNL147W	-	80	47.826	ENSPMEG00000000587	lsm7	80	48.315	Poecilia_mexicana
YNL147W	-	80	47.826	ENSPCOG00000017177	LSM7	87	47.826	Propithecus_coquereli
YNL147W	-	77	48.315	ENSPNYG00000006938	lsm7	83	48.315	Pundamilia_nyererei
YNL147W	-	77	48.315	ENSPNAG00000010141	lsm7	84	48.315	Pygocentrus_nattereri
YNL147W	-	80	47.826	ENSRNOG00000019552	Lsm7	86	47.826	Rattus_norvegicus
YNL147W	-	80	47.826	ENSRBIG00000035978	LSM7	86	47.826	Rhinopithecus_bieti
YNL147W	-	80	47.826	ENSRROG00000034044	LSM7	86	47.826	Rhinopithecus_roxellana
YNL147W	-	80	47.826	ENSSBOG00000034899	LSM7	86	47.826	Saimiri_boliviensis_boliviensis
YNL147W	-	74	49.412	ENSSFOG00015006728	lsm7	80	49.412	Scleropages_formosus
YNL147W	-	77	48.315	ENSSMAG00000004195	lsm7	87	43.689	Scophthalmus_maximus
YNL147W	-	77	48.315	ENSSDUG00000001863	lsm7	83	48.315	Seriola_dumerili
YNL147W	-	77	48.315	ENSSLDG00000016339	lsm7	83	48.315	Seriola_lalandi_dorsalis
YNL147W	-	77	48.315	ENSSPAG00000015221	lsm7	83	48.315	Stegastes_partitus
YNL147W	-	80	47.826	ENSSSCG00000013463	LSM7	87	47.826	Sus_scrofa
YNL147W	-	77	49.438	ENSTGUG00000000067	LSM7	85	49.438	Taeniopygia_guttata
YNL147W	-	77	48.315	ENSTRUG00000022913	lsm7	83	48.315	Takifugu_rubripes
YNL147W	-	77	48.315	ENSTNIG00000015525	lsm7	83	48.315	Tetraodon_nigroviridis
YNL147W	-	54	41.935	ENSTBEG00000016602	LSM7	84	41.935	Tupaia_belangeri
YNL147W	-	77	49.438	ENSUAMG00000000912	LSM7	72	49.438	Ursus_americanus
YNL147W	-	75	48.837	ENSUMAG00000006556	LSM7	67	49.438	Ursus_maritimus
YNL147W	-	54	46.774	ENSVVUG00000002640	LSM7	54	46.774	Vulpes_vulpes
YNL147W	-	77	49.438	ENSXETG00000022166	lsm7	85	49.438	Xenopus_tropicalis
YNL147W	-	75	47.674	ENSXCOG00000002572	lsm7	84	48.315	Xiphophorus_couchianus
YNL147W	-	80	47.826	ENSXMAG00000018630	lsm7	83	48.315	Xiphophorus_maculatus