EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YNL163C (Gene tree)
Gene ID: -
Gene Symbol: RIA1
Alias: EFL1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 3333
Position: chrXIV:326741-330073
Accession: S000005107
RBP type: canonical RBP
Summary: Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis%3B with Sdo1p%2C a guanine nucleotide exchange factor (GEF)%2C promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes%3B required for quality control check of newly made large ribosomal subunits before they are released into the pool of translating ribosomes

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL163C_mRNA	GTP_EFTU	PF00009.27	1.5e-58	1	1
YNL163C_mRNA	GTP_EFTU_D2	PF03144.25	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL163C_mRNA	-	3333	-	YNL163C_mRNA	1110 (aa)	-	P53893

Gene Model

Click here to download YNL163C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNL163C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YNL163C	RIA1	79	37.923	YDR385W	-	94	37.923
YNL163C	RIA1	79	37.923	YOR133W	-	94	37.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL163C	RIA1	86	46.833	ENSG00000140598	EFL1	95	51.389	Homo_sapiens
YNL163C	RIA1	87	49.891	ENSAPOG00000000188	efl1	94	50.667	Acanthochromis_polyacanthus
YNL163C	RIA1	86	45.928	ENSAMEG00000006031	EFL1	94	46.563	Ailuropoda_melanoleuca
YNL163C	RIA1	87	50.000	ENSACIG00000017802	efl1	96	51.002	Amphilophus_citrinellus
YNL163C	RIA1	87	50.547	ENSAOCG00000023933	efl1	98	51.333	Amphiprion_ocellaris
YNL163C	RIA1	87	50.547	ENSAPEG00000000262	efl1	94	51.333	Amphiprion_percula
YNL163C	RIA1	89	49.778	ENSATEG00000012373	efl1	98	49.556	Anabas_testudineus
YNL163C	RIA1	90	43.863	ENSAPLG00000011147	EFL1	97	43.863	Anas_platyrhynchos
YNL163C	RIA1	90	45.816	ENSACAG00000011040	EFL1	97	45.816	Anolis_carolinensis
YNL163C	RIA1	86	46.833	ENSANAG00000027459	EFL1	96	46.895	Aotus_nancymaae
YNL163C	RIA1	86	49.330	ENSACLG00000025780	efl1	96	50.334	Astatotilapia_calliptera
YNL163C	RIA1	87	51.204	ENSAMXG00000019529	efl1	94	51.204	Astyanax_mexicanus
YNL163C	RIA1	86	47.926	ENSBTAG00000003410	EFL1	96	47.537	Bos_taurus
YNL163C	RIA1	83	38.191	WBGene00010732	K10C3.5	96	50.450	Caenorhabditis_elegans
YNL163C	RIA1	71	64.800	ENSCJAG00000015607	-	85	64.800	Callithrix_jacchus
YNL163C	RIA1	88	45.708	ENSCAFG00000013671	EFL1	96	45.708	Canis_familiaris
YNL163C	RIA1	86	47.926	ENSCHIG00000001883	EFL1	96	47.323	Capra_hircus
YNL163C	RIA1	88	46.204	ENSTSYG00000000348	EFL1	95	47.072	Carlito_syrichta
YNL163C	RIA1	88	38.462	ENSCAPG00000017944	EFL1	96	38.462	Cavia_aperea
YNL163C	RIA1	88	46.781	ENSCPOG00000001924	EFL1	96	47.854	Cavia_porcellus
YNL163C	RIA1	86	46.833	ENSCCAG00000034450	EFL1	96	46.895	Cebus_capucinus
YNL163C	RIA1	88	45.610	ENSCATG00000031678	-	96	46.352	Cercocebus_atys
YNL163C	RIA1	88	46.795	ENSCLAG00000010155	EFL1	96	47.863	Chinchilla_lanigera
YNL163C	RIA1	88	45.064	ENSCSAG00000015165	EFL1	96	45.806	Chlorocebus_sabaeus
YNL163C	RIA1	59	37.879	ENSCHOG00000014029	EFL1	78	37.774	Choloepus_hoffmanni
YNL163C	RIA1	87	48.132	ENSCPBG00000017638	EFL1	94	48.132	Chrysemys_picta_bellii
YNL163C	RIA1	100	42.226	ENSCSAVG00000001787	-	98	50.262	Ciona_savignyi
YNL163C	RIA1	86	46.154	ENSCANG00000038093	EFL1	96	46.137	Colobus_angolensis_palliatus
YNL163C	RIA1	86	46.032	ENSCGRG00001010826	Efl1	95	46.304	Cricetulus_griseus_chok1gshd
YNL163C	RIA1	86	46.032	ENSCGRG00000003273	Efl1	95	46.304	Cricetulus_griseus_crigri
YNL163C	RIA1	87	49.565	ENSCSEG00000005856	efl1	96	50.552	Cynoglossus_semilaevis
YNL163C	RIA1	80	46.322	ENSCVAG00000011863	efl1	93	46.070	Cyprinodon_variegatus
YNL163C	RIA1	89	48.734	ENSDARG00000079672	efl1	95	48.734	Danio_rerio
YNL163C	RIA1	86	47.059	ENSDNOG00000006097	EFL1	95	47.505	Dasypus_novemcinctus
YNL163C	RIA1	88	46.522	ENSDORG00000000719	Efl1	95	47.939	Dipodomys_ordii
YNL163C	RIA1	88	46.325	FBgn0053158	CG33158	96	46.325	Drosophila_melanogaster
YNL163C	RIA1	75	41.902	ENSETEG00000004309	EFL1	88	43.590	Echinops_telfairi
YNL163C	RIA1	78	47.577	ENSEBUG00000010738	efl1	99	47.577	Eptatretus_burgeri
YNL163C	RIA1	86	46.380	ENSEASG00005007108	EFL1	94	47.007	Equus_asinus_asinus
YNL163C	RIA1	82	44.110	ENSECAG00000016354	EFL1	95	44.853	Equus_caballus
YNL163C	RIA1	58	45.797	ENSEEUG00000006326	EFL1	74	45.797	Erinaceus_europaeus
YNL163C	RIA1	91	45.418	ENSELUG00000002520	efl1	99	52.131	Esox_lucius
YNL163C	RIA1	86	46.939	ENSFCAG00000007741	EFL1	96	46.137	Felis_catus
YNL163C	RIA1	91	46.266	ENSFALG00000011103	EFL1	98	46.266	Ficedula_albicollis
YNL163C	RIA1	86	47.392	ENSFDAG00000009023	EFL1	96	46.934	Fukomys_damarensis
YNL163C	RIA1	87	48.786	ENSFHEG00000017795	efl1	96	48.786	Fundulus_heteroclitus
YNL163C	RIA1	92	49.375	ENSGMOG00000005041	efl1	99	49.375	Gadus_morhua
YNL163C	RIA1	88	47.323	ENSGALG00000006225	EFL1	94	47.097	Gallus_gallus
YNL163C	RIA1	99	40.218	ENSGACG00000012495	efl1	99	40.218	Gasterosteus_aculeatus
YNL163C	RIA1	87	47.473	ENSGAGG00000022841	EFL1	94	47.473	Gopherus_agassizii
YNL163C	RIA1	86	39.308	ENSGGOG00000005017	EFL1	97	39.308	Gorilla_gorilla
YNL163C	RIA1	86	49.220	ENSHBUG00000022667	efl1	95	50.111	Haplochromis_burtoni
YNL163C	RIA1	88	42.489	ENSHGLG00000011798	EFL1	96	43.562	Heterocephalus_glaber_female
YNL163C	RIA1	88	46.781	ENSHGLG00100010319	EFTUD1	82	67.647	Heterocephalus_glaber_male
YNL163C	RIA1	91	47.800	ENSHCOG00000007325	efl1	96	50.922	Hippocampus_comes
YNL163C	RIA1	93	46.784	ENSIPUG00000023360	EFTUD1	98	46.784	Ictalurus_punctatus
YNL163C	RIA1	86	41.176	ENSSTOG00000022945	EFL1	96	41.542	Ictidomys_tridecemlineatus
YNL163C	RIA1	86	47.059	ENSJJAG00000018598	Efl1	95	47.672	Jaculus_jaculus
YNL163C	RIA1	87	50.000	ENSLBEG00000015269	efl1	96	50.339	Labrus_bergylta
YNL163C	RIA1	88	49.565	ENSLACG00000016121	EFL1	95	49.565	Latimeria_chalumnae
YNL163C	RIA1	88	49.892	ENSLOCG00000012862	efl1	94	49.892	Lepisosteus_oculatus
YNL163C	RIA1	84	47.596	ENSLAFG00000012504	EFL1	99	43.080	Loxodonta_africana
YNL163C	RIA1	88	45.708	ENSMFAG00000032657	-	96	46.352	Macaca_fascicularis
YNL163C	RIA1	99	38.998	ENSMMUG00000023353	EFL1	99	39.245	Macaca_mulatta
YNL163C	RIA1	88	45.610	ENSMNEG00000041671	-	95	46.352	Macaca_nemestrina
YNL163C	RIA1	88	45.708	ENSMLEG00000033735	EFL1	96	46.352	Mandrillus_leucophaeus
YNL163C	RIA1	89	49.469	ENSMAMG00000011336	efl1	97	50.216	Mastacembelus_armatus
YNL163C	RIA1	86	49.441	ENSMZEG00005003012	efl1	95	50.446	Maylandia_zebra
YNL163C	RIA1	88	47.335	ENSMGAG00000007991	EFL1	94	47.109	Meleagris_gallopavo
YNL163C	RIA1	86	46.259	ENSMAUG00000010709	Efl1	95	46.522	Mesocricetus_auratus
YNL163C	RIA1	86	48.190	ENSMICG00000027853	EFL1	93	49.875	Microcebus_murinus
YNL163C	RIA1	86	46.154	ENSMOCG00000007470	Efl1	95	46.638	Microtus_ochrogaster
YNL163C	RIA1	80	46.257	ENSMMOG00000015370	efl1	94	47.411	Mola_mola
YNL163C	RIA1	88	45.887	ENSMODG00000019386	EFL1	95	46.753	Monodelphis_domestica
YNL163C	RIA1	93	47.863	ENSMALG00000018810	efl1	99	48.590	Monopterus_albus
YNL163C	RIA1	86	47.285	MGP_CAROLIEiJ_G0029936	Efl1	95	54.918	Mus_caroli
YNL163C	RIA1	86	47.059	ENSMUSG00000038563	Efl1	96	53.191	Mus_musculus
YNL163C	RIA1	86	47.846	MGP_PahariEiJ_G0013157	Efl1	96	54.274	Mus_pahari
YNL163C	RIA1	83	70.455	MGP_SPRETEiJ_G0031038	Efl1	90	70.455	Mus_spretus
YNL163C	RIA1	86	45.578	ENSMPUG00000015494	EFL1	94	46.222	Mustela_putorius_furo
YNL163C	RIA1	88	45.778	ENSNGAG00000017740	Efl1	95	46.667	Nannospalax_galili
YNL163C	RIA1	79	44.413	ENSNLEG00000010679	EFL1	96	44.386	Nomascus_leucogenys
YNL163C	RIA1	54	69.767	ENSMEUG00000012049	-	67	69.767	Notamacropus_eugenii
YNL163C	RIA1	88	46.681	ENSODEG00000016193	EFL1	96	48.291	Octodon_degus
YNL163C	RIA1	90	49.554	ENSONIG00000003394	efl1	98	50.334	Oreochromis_niloticus
YNL163C	RIA1	87	46.413	ENSOCUG00000012163	EFL1	96	46.497	Oryctolagus_cuniculus
YNL163C	RIA1	90	47.500	ENSORLG00015012031	efl1	98	48.225	Oryzias_latipes_hsok
YNL163C	RIA1	89	47.679	ENSOMEG00000022784	efl1	99	44.815	Oryzias_melastigma
YNL163C	RIA1	86	47.586	ENSOARG00000014452	EFL1	96	47.009	Ovis_aries
YNL163C	RIA1	86	39.336	ENSPPAG00000039672	EFL1	96	39.400	Pan_paniscus
YNL163C	RIA1	86	47.166	ENSPPRG00000002193	EFL1	94	46.889	Panthera_pardus
YNL163C	RIA1	86	46.939	ENSPTIG00000007053	EFL1	96	46.137	Panthera_tigris_altaica
YNL163C	RIA1	86	46.833	ENSPTRG00000007374	EFL1	96	46.681	Pan_troglodytes
YNL163C	RIA1	88	45.708	ENSPANG00000015635	-	94	46.352	Papio_anubis
YNL163C	RIA1	88	49.571	ENSPKIG00000018456	efl1	97	49.571	Paramormyrops_kingsleyae
YNL163C	RIA1	87	48.222	ENSPSIG00000007790	EFL1	94	48.330	Pelodiscus_sinensis
YNL163C	RIA1	80	45.692	ENSPMAG00000002026	efl1	94	45.692	Petromyzon_marinus
YNL163C	RIA1	91	45.059	ENSPCIG00000004372	EFL1	99	45.059	Phascolarctos_cinereus
YNL163C	RIA1	88	47.234	ENSPFOG00000018687	efl1	98	46.751	Poecilia_formosa
YNL163C	RIA1	88	46.751	ENSPLAG00000001988	efl1	98	46.751	Poecilia_latipinna
YNL163C	RIA1	88	47.071	ENSPMEG00000000402	efl1	98	47.071	Poecilia_mexicana
YNL163C	RIA1	89	46.377	ENSPREG00000022085	efl1	99	45.418	Poecilia_reticulata
YNL163C	RIA1	86	46.606	ENSPPYG00000006724	EFL1	96	46.467	Pongo_abelii
YNL163C	RIA1	86	46.380	ENSPVAG00000003189	EFL1	96	46.581	Pteropus_vampyrus
YNL163C	RIA1	73	54.485	ENSPNYG00000019406	efl1	97	44.743	Pundamilia_nyererei
YNL163C	RIA1	92	47.441	ENSPNAG00000012104	efl1	99	47.441	Pygocentrus_nattereri
YNL163C	RIA1	86	46.993	ENSRNOG00000032723	Efl1	95	46.581	Rattus_norvegicus
YNL163C	RIA1	86	46.380	ENSRBIG00000040576	EFL1	96	46.352	Rhinopithecus_bieti
YNL163C	RIA1	86	46.606	ENSRROG00000031475	EFL1	96	47.285	Rhinopithecus_roxellana
YNL163C	RIA1	86	46.833	ENSSBOG00000018280	EFL1	96	46.316	Saimiri_boliviensis_boliviensis
YNL163C	RIA1	81	49.866	ENSSHAG00000018863	EFL1	87	50.938	Sarcophilus_harrisii
YNL163C	RIA1	92	47.879	ENSSFOG00015016244	efl1	97	47.879	Scleropages_formosus
YNL163C	RIA1	88	49.138	ENSSMAG00000016928	efl1	95	49.891	Scophthalmus_maximus
YNL163C	RIA1	87	50.547	ENSSDUG00000013271	efl1	95	51.556	Seriola_dumerili
YNL163C	RIA1	87	50.766	ENSSLDG00000014655	efl1	95	51.778	Seriola_lalandi_dorsalis
YNL163C	RIA1	92	45.875	ENSSPUG00000000941	EFL1	99	45.875	Sphenodon_punctatus
YNL163C	RIA1	87	49.453	ENSSPAG00000011885	efl1	94	50.334	Stegastes_partitus
YNL163C	RIA1	85	46.544	ENSSSCG00000001792	EFL1	96	46.567	Sus_scrofa
YNL163C	RIA1	89	47.346	ENSTGUG00000007850	EFL1	96	47.346	Taeniopygia_guttata
YNL163C	RIA1	90	40.412	ENSTNIG00000003399	efl1	97	40.412	Tetraodon_nigroviridis
YNL163C	RIA1	58	53.125	ENSTBEG00000011804	EFL1	70	53.125	Tupaia_belangeri
YNL163C	RIA1	86	44.921	ENSTTRG00000011243	EFL1	96	45.299	Tursiops_truncatus
YNL163C	RIA1	86	45.928	ENSUAMG00000022106	EFL1	94	46.667	Ursus_americanus
YNL163C	RIA1	86	46.154	ENSUMAG00000010303	EFL1	94	46.889	Ursus_maritimus
YNL163C	RIA1	72	54.694	ENSVPAG00000005735	EFL1	78	54.694	Vicugna_pacos
YNL163C	RIA1	88	45.708	ENSVVUG00000004967	EFL1	96	45.708	Vulpes_vulpes
YNL163C	RIA1	88	47.335	ENSXETG00000015701	EFL1	96	47.335	Xenopus_tropicalis
YNL163C	RIA1	89	46.973	ENSXMAG00000023705	efl1	98	46.973	Xiphophorus_maculatus