EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
YNL178W (Gene tree)
Gene ID
-
Gene Symbol
RPS3
Alias
SUF14
Full Name
-
Gene Type
protein_coding
Species
Saccharomyces_cerevisiae
Status
confidence
Strand
Plus strand
Length
723
Position
chrXIV:302680-303402
Accession
S000005122
RBP type
canonical RBP
Summary
Protein component of the small (40S) ribosomal subunit%3B has apurinic/apyrimidinic (AP) endonuclease activity%3B essential for viability%3B nascent Rps3p is bound by specific chaperone Yar1p during translation%3B homologous to mammalian ribosomal protein S3 and bacterial S3
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
YNL178W_mRNAKH_2PF07650.172.2e-1211
YNL178W_mRNARibosomal_S3_CPF00189.201.4e-2311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26632259The RNA-binding proteomes from yeast to man harbour conserved enigmRBPsRIC.PAR_CL & yeast2015 Dec 3Beckmann BMDOI: 10.1038/ncomms10127
25173706Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteinsRNPxl & yeast2014 Aug 31Kramer KDOI: 10.1038/nmeth.3092
25173706Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteinsRNPxl.PAR_CL & yeast2014 Aug 31Kramer KDOI: 10.1038/nmeth.3092
26595419Conserved mRNA-binding proteomes in eukaryotic organismsmRBPome & yeast2015 Nov 23Matia Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
YNL178W_mRNA-723-YNL178W_mRNA240 (aa)-P05750
Gene Model
Click here to download YNL178W's gene model file
Protein-Protein Interaction (PPI)

Clik here to download YNL178W's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
YNL178WRPS39965.975ENSG00000149273RPS39782.857Homo_sapiens
YNL178WRPS39965.975ENSAMEG00000017051RPS39765.975Ailuropoda_melanoleuca
YNL178WRPS38957.339ENSAMEG00000007309-8757.339Ailuropoda_melanoleuca
YNL178WRPS39966.255ENSACIG00000023535rps39966.255Amphilophus_citrinellus
YNL178WRPS39966.255ENSAOCG00000013654rps39966.255Amphiprion_ocellaris
YNL178WRPS39966.255ENSAPEG00000022808rps39966.255Amphiprion_percula
YNL178WRPS38970.968ENSATEG00000003502rps38870.968Anabas_testudineus
YNL178WRPS38956.000ENSAPLG00000014513-8956.000Anas_platyrhynchos
YNL178WRPS38971.429ENSACAG00000002169-8971.429Anolis_carolinensis
YNL178WRPS39965.975ENSANAG00000027669-9273.810Aotus_nancymaae
YNL178WRPS38852.358ENSANAG00000022561-9661.364Aotus_nancymaae
YNL178WRPS38958.065ENSANAG00000023438-8458.065Aotus_nancymaae
YNL178WRPS38971.429ENSACLG00000013763rps39361.966Astatotilapia_calliptera
YNL178WRPS38970.968ENSAMXG00000013642rps38870.968Astyanax_mexicanus
YNL178WRPS39965.975ENSBTAG00000005620RPS39965.975Bos_taurus
YNL178WRPS38864.789WBGene00004472rps-38664.789Caenorhabditis_elegans
YNL178WRPS39965.560ENSCJAG00000015424RPS39273.810Callithrix_jacchus
YNL178WRPS39965.975ENSCAFG00000005402RPS39965.975Canis_familiaris
YNL178WRPS39965.975ENSCAFG00020002102-9965.975Canis_lupus_dingo
YNL178WRPS38447.059ENSCHIG00000015952-8347.059Capra_hircus
YNL178WRPS39965.975ENSCHIG00000012342-9965.975Capra_hircus
YNL178WRPS39963.115ENSTSYG00000034881-9669.173Carlito_syrichta
YNL178WRPS39965.975ENSTSYG00000008664-9472.414Carlito_syrichta
YNL178WRPS38571.014ENSCAPG00000016681-8671.014Cavia_aperea
YNL178WRPS39965.975ENSCPOG00000004665-9965.975Cavia_porcellus
YNL178WRPS39165.766ENSCCAG00000021048-9961.947Cebus_capucinus
YNL178WRPS39965.975ENSCCAG00000022155RPS39273.810Cebus_capucinus
YNL178WRPS38963.594ENSCATG00000043998-9363.636Cercocebus_atys
YNL178WRPS36575.714ENSCATG00000011713-9775.714Cercocebus_atys
YNL178WRPS38959.722ENSCATG00000037875-9260.140Cercocebus_atys
YNL178WRPS39965.975ENSCATG00000035348-9965.975Cercocebus_atys
YNL178WRPS39965.975ENSCLAG00000013819-9965.975Chinchilla_lanigera
YNL178WRPS39965.975ENSCSAG00000003937-9965.975Chlorocebus_sabaeus
YNL178WRPS38957.674ENSCHOG00000005328-8857.674Choloepus_hoffmanni
YNL178WRPS37762.766ENSCPBG00000027671-8762.766Chrysemys_picta_bellii
YNL178WRPS39268.610ENSCING00000005003-9563.200Ciona_intestinalis
YNL178WRPS39068.950ENSCSAVG00000003490-8967.100Ciona_savignyi
YNL178WRPS39960.166ENSCANG00000041522-9262.963Colobus_angolensis_palliatus
YNL178WRPS39965.975ENSCANG00000036026RPS39273.810Colobus_angolensis_palliatus
YNL178WRPS39965.975ENSCGRG00001013667Rps39572.778Cricetulus_griseus_chok1gshd
YNL178WRPS38653.081ENSCGRG00001003744-8453.081Cricetulus_griseus_chok1gshd
YNL178WRPS38653.081ENSCGRG00000004849-8453.081Cricetulus_griseus_crigri
YNL178WRPS38965.741ENSCGRG00000019934-8965.741Cricetulus_griseus_crigri
YNL178WRPS38958.605ENSCGRG00000000152-8958.605Cricetulus_griseus_crigri
YNL178WRPS39963.071ENSCGRG00000004739-9472.353Cricetulus_griseus_crigri
YNL178WRPS39965.844ENSCSEG00000014436rps39965.844Cynoglossus_semilaevis
YNL178WRPS39966.255ENSCVAG00000009247rps39966.255Cyprinodon_variegatus
YNL178WRPS38970.968ENSDARG00000103007rps38870.968Danio_rerio
YNL178WRPS38960.930ENSDNOG00000032230-8760.930Dasypus_novemcinctus
YNL178WRPS39965.975ENSDNOG00000037189-9065.975Dasypus_novemcinctus
YNL178WRPS39256.250ENSDNOG00000014888-9156.250Dasypus_novemcinctus
YNL178WRPS37455.618ENSDORG00000025518-10058.333Dipodomys_ordii
YNL178WRPS39965.975ENSDORG00000002974Rps39965.975Dipodomys_ordii
YNL178WRPS38870.561FBgn0002622RpS38770.561Drosophila_melanogaster
YNL178WRPS38067.526ENSETEG00000015500-8067.526Echinops_telfairi
YNL178WRPS39965.975ENSEASG00005014248-8565.975Equus_asinus_asinus
YNL178WRPS39965.975ENSECAG00000013915-8565.975Equus_caballus
YNL178WRPS38968.664ENSEEUG00000014531-8968.664Erinaceus_europaeus
YNL178WRPS39070.183ENSELUG00000017575-9965.844Esox_lucius
YNL178WRPS38970.507ENSELUG00000024369-8870.507Esox_lucius
YNL178WRPS36952.121ENSFCAG00000033114-9452.121Felis_catus
YNL178WRPS39965.975ENSFCAG00000011942-9965.975Felis_catus
YNL178WRPS38971.429ENSFALG00000007956-6871.429Ficedula_albicollis
YNL178WRPS39965.975ENSFDAG00000016319-9965.975Fukomys_damarensis
YNL178WRPS39965.854ENSFHEG00000022153rps39965.854Fundulus_heteroclitus
YNL178WRPS38970.507ENSGMOG00000000838rps38870.507Gadus_morhua
YNL178WRPS39966.390ENSGALG00000017330-9966.390Gallus_gallus
YNL178WRPS39269.643ENSGAFG00000015709rps39169.643Gambusia_affinis
YNL178WRPS39966.667ENSGACG00000013384rps39966.667Gasterosteus_aculeatus
YNL178WRPS39966.390ENSGAGG00000012704-9966.390Gopherus_agassizii
YNL178WRPS39960.996ENSGGOG00000026674-9660.996Gorilla_gorilla
YNL178WRPS39965.975ENSGGOG00000006519RPS39965.975Gorilla_gorilla
YNL178WRPS38859.624ENSGGOG00000022405-7759.624Gorilla_gorilla
YNL178WRPS38861.972ENSGGOG00000038504-8462.431Gorilla_gorilla
YNL178WRPS38971.429ENSHBUG00000002368rps38870.968Haplochromis_burtoni
YNL178WRPS38970.968ENSHGLG00000019339RPS38970.968Heterocephalus_glaber_female
YNL178WRPS38970.968ENSHGLG00100012857RPS38970.968Heterocephalus_glaber_male
YNL178WRPS38570.192ENSHCOG00000005060rps38470.192Hippocampus_comes
YNL178WRPS38970.968ENSIPUG00000005685rps38870.968Ictalurus_punctatus
YNL178WRPS39965.975ENSSTOG00000028813-9965.975Ictidomys_tridecemlineatus
YNL178WRPS37372.000ENSJJAG00000017023-9672.000Jaculus_jaculus
YNL178WRPS39965.975ENSJJAG00000018981Rps39965.975Jaculus_jaculus
YNL178WRPS39966.255ENSKMAG00000009747rps39966.255Kryptolebias_marmoratus
YNL178WRPS39965.844ENSLBEG00000021017rps39965.844Labrus_bergylta
YNL178WRPS38970.968ENSLACG00000006132-8970.968Latimeria_chalumnae
YNL178WRPS39966.255ENSLOCG00000006405rps39966.255Lepisosteus_oculatus
YNL178WRPS39965.975ENSLAFG00000004297-9965.975Loxodonta_africana
YNL178WRPS39965.975ENSMFAG00000000525RPS39273.810Macaca_fascicularis
YNL178WRPS39965.975ENSMMUG00000009019RPS39965.975Macaca_mulatta
YNL178WRPS38564.390ENSMMUG00000045640-9364.390Macaca_mulatta
YNL178WRPS37554.348ENSMMUG00000037851-8554.348Macaca_mulatta
YNL178WRPS38564.878ENSMNEG00000030799-9361.463Macaca_nemestrina
YNL178WRPS39965.975ENSMNEG00000032069-9273.810Macaca_nemestrina
YNL178WRPS38566.667ENSMLEG00000017301-9363.285Mandrillus_leucophaeus
YNL178WRPS38959.447ENSMLEG00000032606-9959.783Mandrillus_leucophaeus
YNL178WRPS39959.336ENSMLEG00000044314-9959.336Mandrillus_leucophaeus
YNL178WRPS39965.975ENSMLEG00000027047RPS39965.975Mandrillus_leucophaeus
YNL178WRPS39665.254ENSMAMG00000020146rps38870.968Mastacembelus_armatus
YNL178WRPS38971.429ENSMZEG00005024678rps38764.977Maylandia_zebra
YNL178WRPS39965.975ENSMAUG00000012031-9965.975Mesocricetus_auratus
YNL178WRPS38964.977ENSMAUG00000006329-8864.977Mesocricetus_auratus
YNL178WRPS38951.389ENSMAUG00000015088-8751.389Mesocricetus_auratus
YNL178WRPS38963.303ENSMICG00000033427-8563.303Microcebus_murinus
YNL178WRPS39965.975ENSMICG00000030910-9573.810Microcebus_murinus
YNL178WRPS39965.975ENSMOCG00000007699Rps39965.975Microtus_ochrogaster
YNL178WRPS310066.122ENSMMOG00000005152rps39966.122Mola_mola
YNL178WRPS39965.975ENSMODG00000006945-9965.975Monodelphis_domestica
YNL178WRPS38970.968ENSMALG00000021156rps38970.968Monopterus_albus
YNL178WRPS39965.975MGP_CAROLIEiJ_G0030029Rps39965.975Mus_caroli
YNL178WRPS39965.975ENSMUSG00000030744Rps39965.975Mus_musculus
YNL178WRPS39965.975MGP_PahariEiJ_G0013250Rps39972.778Mus_pahari
YNL178WRPS39965.975MGP_SPRETEiJ_G0031139Rps39965.975Mus_spretus
YNL178WRPS39965.975ENSMPUG00000009197-9965.975Mustela_putorius_furo
YNL178WRPS38555.556ENSMLUG00000026956-8655.556Myotis_lucifugus
YNL178WRPS39965.560ENSMLUG00000004079-9965.560Myotis_lucifugus
YNL178WRPS38654.545ENSMLUG00000025123-8754.545Myotis_lucifugus
YNL178WRPS39965.975ENSNGAG00000015514Rps39769.832Nannospalax_galili
YNL178WRPS38971.429ENSNBRG00000006241rps38871.429Neolamprologus_brichardi
YNL178WRPS37661.622ENSNLEG00000036221-9761.622Nomascus_leucogenys
YNL178WRPS35863.309ENSNLEG00000029322-9863.309Nomascus_leucogenys
YNL178WRPS38962.212ENSNLEG00000027260-8964.662Nomascus_leucogenys
YNL178WRPS39965.975ENSMEUG00000011581-9965.975Notamacropus_eugenii
YNL178WRPS36363.158ENSODEG00000001789-9763.158Octodon_degus
YNL178WRPS39965.560ENSODEG00000004564-9965.560Octodon_degus
YNL178WRPS38963.594ENSODEG00000002537-8863.594Octodon_degus
YNL178WRPS39957.676ENSODEG00000000640-9957.676Octodon_degus
YNL178WRPS38971.429ENSONIG00000001263rps37871.429Oreochromis_niloticus
YNL178WRPS38766.038ENSOANG00000009953-10066.038Ornithorhynchus_anatinus
YNL178WRPS39763.983ENSOCUG00000024686-9763.983Oryctolagus_cuniculus
YNL178WRPS38970.968ENSOCUG00000022412-7770.968Oryctolagus_cuniculus
YNL178WRPS39966.255ENSORLG00000000607rps39966.255Oryzias_latipes
YNL178WRPS39966.255ENSORLG00020021035rps39966.255Oryzias_latipes_hni
YNL178WRPS39966.255ENSORLG00015010080rps39966.255Oryzias_latipes_hsok
YNL178WRPS37258.192ENSOMEG00000020705rps39758.192Oryzias_melastigma
YNL178WRPS39965.702ENSOGAG00000005318RPS39965.702Otolemur_garnettii
YNL178WRPS39965.975ENSOARG00000011523RPS38565.975Ovis_aries
YNL178WRPS38963.134ENSPPAG00000039573-8163.134Pan_paniscus
YNL178WRPS39965.975ENSPPAG00000029211RPS39965.975Pan_paniscus
YNL178WRPS38964.977ENSPPAG00000033710-9066.667Pan_paniscus
YNL178WRPS39965.975ENSPPRG00000021200-9965.975Panthera_pardus
YNL178WRPS39965.975ENSPTIG00000012777-9965.975Panthera_tigris_altaica
YNL178WRPS39960.996ENSPTRG00000015680-8966.848Pan_troglodytes
YNL178WRPS38963.134ENSPTRG00000047374-7864.662Pan_troglodytes
YNL178WRPS39965.975ENSPTRG00000048574RPS39965.975Pan_troglodytes
YNL178WRPS36572.857ENSPANG00000032441-9772.857Papio_anubis
YNL178WRPS39961.868ENSPANG00000016549-9271.318Papio_anubis
YNL178WRPS38262.312ENSPANG00000033652-9060.833Papio_anubis
YNL178WRPS38970.046ENSPKIG00000024046rps38870.046Paramormyrops_kingsleyae
YNL178WRPS39966.390ENSPSIG00000008818-9966.390Pelodiscus_sinensis
YNL178WRPS38970.968ENSPMGG00000012744rps38970.968Periophthalmus_magnuspinnatus
YNL178WRPS38956.221ENSPEMG00000020704-8856.221Peromyscus_maniculatus_bairdii
YNL178WRPS39965.975ENSPEMG00000021741-9965.975Peromyscus_maniculatus_bairdii
YNL178WRPS39848.945ENSPEMG00000022426-9748.945Peromyscus_maniculatus_bairdii
YNL178WRPS37573.333ENSPMAG00000007775-9073.333Petromyzon_marinus
YNL178WRPS37561.111ENSPCIG00000030274-8861.111Phascolarctos_cinereus
YNL178WRPS39965.975ENSPCIG00000024144-9965.975Phascolarctos_cinereus
YNL178WRPS39269.643ENSPFOG00000013835rps39169.643Poecilia_formosa
YNL178WRPS39269.643ENSPLAG00000005854rps39169.643Poecilia_latipinna
YNL178WRPS39269.643ENSPMEG00000020999rps39169.643Poecilia_mexicana
YNL178WRPS39269.643ENSPREG00000017536rps39169.643Poecilia_reticulata
YNL178WRPS39965.975ENSPPYG00000003688RPS39965.975Pongo_abelii
YNL178WRPS37762.032ENSPCAG00000003033-7762.032Procavia_capensis
YNL178WRPS38963.594ENSPCOG00000026192-8865.116Propithecus_coquereli
YNL178WRPS39965.975ENSPCOG00000028750RPS39965.975Propithecus_coquereli
YNL178WRPS38353.171ENSPCOG00000024652-8753.571Propithecus_coquereli
YNL178WRPS39963.071ENSPVAG00000011271-9963.071Pteropus_vampyrus
YNL178WRPS38971.429ENSPNYG00000007419rps38871.429Pundamilia_nyererei
YNL178WRPS38970.968ENSPNAG00000018641rps38870.968Pygocentrus_nattereri
YNL178WRPS39963.485ENSRNOG00000007605AABR07052430.19963.485Rattus_norvegicus
YNL178WRPS39965.975ENSRNOG00000017418Rps39965.975Rattus_norvegicus
YNL178WRPS35570.677ENSRBIG00000042266-9077.215Rhinopithecus_bieti
YNL178WRPS37352.273ENSRBIG00000012001-9352.273Rhinopithecus_bieti
YNL178WRPS38957.870ENSRBIG00000033623-8165.789Rhinopithecus_bieti
YNL178WRPS38963.761ENSRBIG00000040846-9564.912Rhinopithecus_bieti
YNL178WRPS39965.975ENSRBIG00000044916RPS39965.975Rhinopithecus_bieti
YNL178WRPS39965.975ENSRROG00000009870RPS39965.975Rhinopithecus_roxellana
YNL178WRPS39952.282ENSRROG00000039887-9848.548Rhinopithecus_roxellana
YNL178WRPS35570.677ENSRROG00000039976-9370.677Rhinopithecus_roxellana
YNL178WRPS38970.507ENSRROG00000032977-9572.928Rhinopithecus_roxellana
YNL178WRPS39260.090ENSSBOG00000021803-8860.090Saimiri_boliviensis_boliviensis
YNL178WRPS38853.302ENSSBOG00000024651-7553.302Saimiri_boliviensis_boliviensis
YNL178WRPS39965.975ENSSBOG00000021847-9273.810Saimiri_boliviensis_boliviensis
YNL178WRPS39865.126ENSSHAG00000011198-9865.126Sarcophilus_harrisii
YNL178WRPS38970.507ENSSFOG00015002290rps38870.507Scleropages_formosus
YNL178WRPS38970.968ENSSMAG00000004341rps38870.968Scophthalmus_maximus
YNL178WRPS38970.968ENSSDUG00000004327rps38870.968Seriola_dumerili
YNL178WRPS35572.180ENSSLDG00000007403-9972.180Seriola_lalandi_dorsalis
YNL178WRPS38970.968ENSSLDG00000018053rps38870.968Seriola_lalandi_dorsalis
YNL178WRPS38970.507ENSSARG00000006979-9070.507Sorex_araneus
YNL178WRPS38571.498ENSSPUG00000017181-8871.498Sphenodon_punctatus
YNL178WRPS38971.429ENSSPAG00000022245rps38871.429Stegastes_partitus
YNL178WRPS39346.222ENSSSCG00000036413-9546.222Sus_scrofa
YNL178WRPS39965.975ENSSSCG00000014855RPS39965.975Sus_scrofa
YNL178WRPS35070.968ENSTGUG00000013480-8170.968Taeniopygia_guttata
YNL178WRPS38970.968ENSTRUG00000023549rps38870.968Takifugu_rubripes
YNL178WRPS39965.975ENSTBEG00000007053-9965.975Tupaia_belangeri
YNL178WRPS39965.975ENSTTRG00000005858RPS39965.975Tursiops_truncatus
YNL178WRPS39965.975ENSUAMG00000021546-9965.975Ursus_americanus
YNL178WRPS39965.975ENSUMAG00000010808-9965.975Ursus_maritimus
YNL178WRPS39965.975ENSVPAG00000011615RPS39965.975Vicugna_pacos
YNL178WRPS39965.975ENSVVUG00000024353-9965.975Vulpes_vulpes
YNL178WRPS38971.101ENSXETG00000010729rps38871.101Xenopus_tropicalis
YNL178WRPS39269.643ENSXCOG00000012468rps39169.643Xiphophorus_couchianus
YNL178WRPS39269.643ENSXMAG00000004703rps39169.643Xiphophorus_maculatus

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