EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YNL232W (Gene tree)
Gene ID: -
Gene Symbol: CSL4
Alias: SKI4
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 879
Position: chrXIV:214923-215801
Accession: S000005176
RBP type: canonical RBP
Summary: Exosome non-catalytic core component%3B involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm%3B predicted to contain an S1 RNA binding domain%3B human homolog EXOSC1 partially complements yeast csl4 null mutant%2C and can complement inviability of strain in which expression of CSL4 is repressed

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL232W_mRNA	EXOSC1	PF10447.9	5.3e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL232W_mRNA	-	879	-	YNL232W_mRNA	292 (aa)	-	P53859

Gene Model

Click here to download YNL232W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNL232W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL232W	CSL4	54	36.250	ENSG00000171311	EXOSC1	56	47.959	Homo_sapiens
YNL232W	CSL4	55	38.037	ENSAPOG00000007822	exosc1	65	38.037	Acanthochromis_polyacanthus
YNL232W	CSL4	54	38.750	ENSACIG00000018956	exosc1	61	38.750	Amphilophus_citrinellus
YNL232W	CSL4	54	37.500	ENSAOCG00000010699	exosc1	64	37.500	Amphiprion_ocellaris
YNL232W	CSL4	54	31.250	ENSAPEG00000012690	exosc1	63	31.250	Amphiprion_percula
YNL232W	CSL4	54	38.125	ENSATEG00000018683	exosc1	64	38.125	Anabas_testudineus
YNL232W	CSL4	54	38.125	ENSACLG00000021243	exosc1	64	38.125	Astatotilapia_calliptera
YNL232W	CSL4	55	37.423	ENSAMXG00000011116	exosc1	65	37.423	Astyanax_mexicanus
YNL232W	CSL4	54	36.250	ENSCATG00000034114	EXOSC1	56	47.959	Cercocebus_atys
YNL232W	CSL4	54	36.250	ENSCSAG00000005870	EXOSC1	64	36.250	Chlorocebus_sabaeus
YNL232W	CSL4	55	36.420	ENSCING00000022734	-	61	36.420	Ciona_intestinalis
YNL232W	CSL4	55	36.250	ENSCSAVG00000010865	-	64	36.250	Ciona_savignyi
YNL232W	CSL4	54	36.250	ENSCANG00000034159	EXOSC1	56	47.959	Colobus_angolensis_palliatus
YNL232W	CSL4	55	36.810	ENSCVAG00000016748	exosc1	65	36.810	Cyprinodon_variegatus
YNL232W	CSL4	55	37.423	ENSDARG00000059841	exosc1	65	37.423	Danio_rerio
YNL232W	CSL4	54	38.750	ENSELUG00000017369	exosc1	55	45.918	Esox_lucius
YNL232W	CSL4	55	36.810	ENSFHEG00000009154	exosc1	65	36.810	Fundulus_heteroclitus
YNL232W	CSL4	54	37.500	ENSGMOG00000008993	exosc1	64	37.500	Gadus_morhua
YNL232W	CSL4	54	36.250	ENSGACG00000018936	exosc1	64	36.250	Gasterosteus_aculeatus
YNL232W	CSL4	54	38.125	ENSHBUG00000017857	exosc1	65	38.125	Haplochromis_burtoni
YNL232W	CSL4	54	38.125	ENSHCOG00000019882	exosc1	64	38.125	Hippocampus_comes
YNL232W	CSL4	55	37.423	ENSIPUG00000007685	exosc1	65	37.423	Ictalurus_punctatus
YNL232W	CSL4	55	38.037	ENSKMAG00000001202	exosc1	54	38.037	Kryptolebias_marmoratus
YNL232W	CSL4	54	38.125	ENSLBEG00000011448	exosc1	64	38.125	Labrus_bergylta
YNL232W	CSL4	54	36.250	ENSMFAG00000001493	EXOSC1	56	47.959	Macaca_fascicularis
YNL232W	CSL4	54	36.250	ENSMMUG00000020028	EXOSC1	56	47.959	Macaca_mulatta
YNL232W	CSL4	54	36.250	ENSMNEG00000029816	EXOSC1	56	47.959	Macaca_nemestrina
YNL232W	CSL4	54	33.125	ENSMLEG00000027643	EXOSC1	53	44.578	Mandrillus_leucophaeus
YNL232W	CSL4	55	37.423	ENSMAMG00000012200	exosc1	65	37.423	Mastacembelus_armatus
YNL232W	CSL4	54	38.125	ENSMZEG00005007042	exosc1	64	38.125	Maylandia_zebra
YNL232W	CSL4	55	37.423	ENSMALG00000007061	exosc1	64	37.423	Monopterus_albus
YNL232W	CSL4	54	35.625	ENSNLEG00000013872	EXOSC1	56	46.939	Nomascus_leucogenys
YNL232W	CSL4	54	37.500	ENSONIG00000017683	exosc1	64	37.500	Oreochromis_niloticus
YNL232W	CSL4	54	36.875	ENSORLG00015004317	exosc1	64	36.875	Oryzias_latipes_hsok
YNL232W	CSL4	54	36.250	ENSPTRG00000002808	EXOSC1	56	47.959	Pan_troglodytes
YNL232W	CSL4	54	36.250	ENSPANG00000021324	EXOSC1	56	47.959	Papio_anubis
YNL232W	CSL4	55	37.423	ENSPKIG00000016037	exosc1	65	37.423	Paramormyrops_kingsleyae
YNL232W	CSL4	54	36.250	ENSPPYG00000002531	EXOSC1	64	36.250	Pongo_abelii
YNL232W	CSL4	54	38.125	ENSPNYG00000021745	exosc1	56	50.000	Pundamilia_nyererei
YNL232W	CSL4	55	37.423	ENSPNAG00000001944	exosc1	57	48.980	Pygocentrus_nattereri
YNL232W	CSL4	54	36.250	ENSRBIG00000035618	EXOSC1	56	47.959	Rhinopithecus_bieti
YNL232W	CSL4	54	36.250	ENSRROG00000032589	EXOSC1	56	47.959	Rhinopithecus_roxellana
YNL232W	CSL4	55	37.423	ENSSFOG00015016289	-	56	50.000	Scleropages_formosus
YNL232W	CSL4	55	38.650	ENSSFOG00015009069	exosc1	65	38.650	Scleropages_formosus
YNL232W	CSL4	54	37.500	ENSSMAG00000003721	exosc1	64	37.500	Scophthalmus_maximus
YNL232W	CSL4	54	37.500	ENSSDUG00000002993	exosc1	64	37.500	Seriola_dumerili
YNL232W	CSL4	54	37.500	ENSSLDG00000025181	exosc1	64	37.500	Seriola_lalandi_dorsalis
YNL232W	CSL4	54	31.875	ENSSPAG00000016792	exosc1	50	31.875	Stegastes_partitus
YNL232W	CSL4	54	36.250	ENSTRUG00000007706	exosc1	64	36.250	Takifugu_rubripes
YNL232W	CSL4	63	34.409	ENSTNIG00000014079	exosc1	70	34.409	Tetraodon_nigroviridis
YNL232W	CSL4	55	34.969	ENSXETG00000003434	exosc1	65	34.969	Xenopus_tropicalis