EuRBPDB

Description

Ensembl ID: YNL245C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Splicing factor required for the first step of pre-mRNA splicing%3B binding to the spliceosome requires Prp2p and Yju2p%3B heat-stable protein%3B has similarity to S. pombe Cwf25p
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 540 bases
Position: chrXIV:186346-186885
Accession: S000005189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL245C_mRNA	CWC25	PF12542.8	1e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL245C_mRNA	-	540	-	YNL245C_mRNA	179 (aa)	-	P53854

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL245C	-	54	32.323	ENSG00000273559	CWC25	78	43.396	Homo_sapiens
YNL245C	-	54	32.323	ENSBTAG00000030591	CWC25	54	36.364	Bos_taurus
YNL245C	-	54	35.417	ENSCLAG00000017102	CWC25	55	36.364	Chinchilla_lanigera
YNL245C	-	54	37.500	ENSEBUG00000002947	cwc25	52	37.500	Eptatretus_burgeri
YNL245C	-	54	35.417	MGP_SPRETEiJ_G0017910	Cwc25	50	36.364	Mus_spretus
YNL245C	-	54	35.417	ENSMLUG00000029248	-	53	36.364	Myotis_lucifugus