EuRBPDB

Description

Ensembl ID: YNL292W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1212
Position: chrXIV:82806-84017
Accession: S000005236
RBP type: canonical RBP
Summary: Pseudouridine synthase%3B catalyzes only the formation of pseudouridine-55 (Psi55)%2C a highly conserved tRNA modification%2C in mitochondrial and cytoplasmic tRNAs%3B also responsible for pseudouracil modification of some mRNAs%3B PUS4 overexpression leads to translational derepression of GCN4 (Gcd- phenotype)

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNL292W_mRNA	TruB_N	PF01509.18	1.6e-41	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNL292W_mRNA	-	1212	-	YNL292W_mRNA	403 (aa)	-	P48567

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNL292W	-	51	34.146	ENSAMXG00000015845	trub1	59	34.146	Astyanax_mexicanus
YNL292W	-	51	35.266	ENSIPUG00000017559	trub1	62	35.122	Ictalurus_punctatus
YNL292W	-	75	38.220	ENSOANG00000001556	TRUB1	89	38.220	Ornithorhynchus_anatinus
YNL292W	-	51	35.122	ENSSFOG00015022124	trub1	60	35.122	Scleropages_formosus
YNL292W	-	51	34.146	ENSXETG00000023828	trub1	63	34.146	Xenopus_tropicalis