EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YNR015W (Gene tree)
Gene ID: -
Gene Symbol: SMM1
Alias: DUS2
Full Name: Dihydrouridine synthase%3B member of a family of dihydrouridine synthases including Dus1p%2C Smm1p%2C Dus3p%2C and Dus4p%3B modifies uridine residues at position 20 of cytoplasmic tRNAs
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1155 bases
Position: chrXIV:653387-654541
Accession: S000005298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YNR015W_mRNA	Dus	PF01207.17	1.9e-83	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YNR015W_mRNA	-	1155	-	YNR015W_mRNA	384 (aa)	-	P53720

Gene Model

Click here to download YNR015W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YNR015W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YNR015W	SMM1	78	38.742	ENSG00000167264	DUS2	82	61.905	Homo_sapiens
YNR015W	SMM1	92	35.556	ENSAPOG00000014250	dus2	65	35.556	Acanthochromis_polyacanthus
YNR015W	SMM1	79	38.689	ENSAOCG00000023179	dus2	78	38.689	Amphiprion_ocellaris
YNR015W	SMM1	79	34.754	ENSAPEG00000012860	dus2	55	34.754	Amphiprion_percula
YNR015W	SMM1	79	37.377	ENSATEG00000011729	dus2	58	37.377	Anabas_testudineus
YNR015W	SMM1	78	40.066	ENSACAG00000009757	DUS2	58	40.066	Anolis_carolinensis
YNR015W	SMM1	78	38.742	ENSANAG00000023126	DUS2	57	38.742	Aotus_nancymaae
YNR015W	SMM1	91	33.520	ENSACLG00000023737	dus2	66	33.520	Astatotilapia_calliptera
YNR015W	SMM1	78	38.487	ENSAMXG00000017685	dus2	56	38.487	Astyanax_mexicanus
YNR015W	SMM1	78	39.073	ENSBTAG00000014644	DUS2	61	39.073	Bos_taurus
YNR015W	SMM1	78	36.545	WBGene00013201	dus-2	64	36.545	Caenorhabditis_elegans
YNR015W	SMM1	78	38.742	ENSCJAG00000015797	DUS2	57	38.742	Callithrix_jacchus
YNR015W	SMM1	78	39.073	ENSCAFG00000020326	DUS2	57	39.073	Canis_familiaris
YNR015W	SMM1	78	39.073	ENSCAFG00020019787	DUS2	57	39.073	Canis_lupus_dingo
YNR015W	SMM1	78	34.884	ENSCHIG00000023088	DUS2	55	34.884	Capra_hircus
YNR015W	SMM1	78	38.742	ENSTSYG00000013135	DUS2	57	38.742	Carlito_syrichta
YNR015W	SMM1	78	39.073	ENSCPOG00000013747	DUS2	57	39.073	Cavia_porcellus
YNR015W	SMM1	78	38.742	ENSCCAG00000000046	DUS2	57	38.742	Cebus_capucinus
YNR015W	SMM1	78	38.742	ENSCATG00000030756	DUS2	57	38.742	Cercocebus_atys
YNR015W	SMM1	78	39.073	ENSCLAG00000004546	DUS2	57	39.073	Chinchilla_lanigera
YNR015W	SMM1	78	38.742	ENSCSAG00000004050	DUS2	57	38.742	Chlorocebus_sabaeus
YNR015W	SMM1	78	40.199	ENSCPBG00000012099	DUS2	54	40.199	Chrysemys_picta_bellii
YNR015W	SMM1	76	38.435	ENSCSAVG00000002472	-	62	38.435	Ciona_savignyi
YNR015W	SMM1	78	38.411	ENSCANG00000031996	DUS2	57	38.411	Colobus_angolensis_palliatus
YNR015W	SMM1	78	38.742	ENSCGRG00001012463	Dus2	57	38.742	Cricetulus_griseus_chok1gshd
YNR015W	SMM1	78	38.742	ENSCGRG00000008944	Dus2	57	38.742	Cricetulus_griseus_crigri
YNR015W	SMM1	79	39.344	ENSCSEG00000021697	dus2	52	39.344	Cynoglossus_semilaevis
YNR015W	SMM1	78	39.610	ENSCVAG00000022050	dus2	57	39.610	Cyprinodon_variegatus
YNR015W	SMM1	78	40.468	ENSDARG00000077607	dus2	90	48.175	Danio_rerio
YNR015W	SMM1	84	32.530	ENSDNOG00000018578	DUS2	66	32.530	Dasypus_novemcinctus
YNR015W	SMM1	73	31.317	ENSDORG00000001654	Dus2	56	31.317	Dipodomys_ordii
YNR015W	SMM1	93	32.527	FBgn0030554	CG1434	74	32.527	Drosophila_melanogaster
YNR015W	SMM1	78	30.464	ENSETEG00000005320	DUS2	72	30.464	Echinops_telfairi
YNR015W	SMM1	60	38.793	ENSEBUG00000001597	dus2	61	38.793	Eptatretus_burgeri
YNR015W	SMM1	78	36.755	ENSEASG00005020405	DUS2	57	35.762	Equus_asinus_asinus
YNR015W	SMM1	78	39.073	ENSECAG00000023209	DUS2	57	39.073	Equus_caballus
YNR015W	SMM1	67	38.224	ENSEEUG00000004923	DUS2	50	38.224	Erinaceus_europaeus
YNR015W	SMM1	90	36.994	ENSELUG00000017339	dus2	63	36.994	Esox_lucius
YNR015W	SMM1	78	38.742	ENSFCAG00000010417	DUS2	57	38.742	Felis_catus
YNR015W	SMM1	78	40.066	ENSFALG00000007759	DUS2	58	40.066	Ficedula_albicollis
YNR015W	SMM1	78	38.742	ENSFDAG00000016111	DUS2	58	38.742	Fukomys_damarensis
YNR015W	SMM1	77	38.176	ENSGMOG00000011112	dus2	59	38.176	Gadus_morhua
YNR015W	SMM1	78	40.397	ENSGALG00000048067	DUS2	58	40.397	Gallus_gallus
YNR015W	SMM1	77	39.394	ENSGAFG00000003850	dus2	55	39.394	Gambusia_affinis
YNR015W	SMM1	79	36.066	ENSGACG00000008159	dus2	59	36.066	Gasterosteus_aculeatus
YNR015W	SMM1	78	39.404	ENSGAGG00000004570	DUS2	53	39.404	Gopherus_agassizii
YNR015W	SMM1	69	36.330	ENSGGOG00000007381	DUS2	51	30.712	Gorilla_gorilla
YNR015W	SMM1	91	33.520	ENSHBUG00000020267	dus2	70	33.520	Haplochromis_burtoni
YNR015W	SMM1	78	38.411	ENSHGLG00000018885	DUS2	57	38.411	Heterocephalus_glaber_female
YNR015W	SMM1	78	38.411	ENSHGLG00100013033	DUS2	57	38.411	Heterocephalus_glaber_male
YNR015W	SMM1	79	35.197	ENSHCOG00000009462	dus2	58	35.197	Hippocampus_comes
YNR015W	SMM1	91	36.158	ENSIPUG00000023029	DUS2	64	36.158	Ictalurus_punctatus
YNR015W	SMM1	78	38.742	ENSSTOG00000002066	DUS2	57	38.742	Ictidomys_tridecemlineatus
YNR015W	SMM1	78	32.792	ENSLBEG00000005839	dus2	55	32.792	Labrus_bergylta
YNR015W	SMM1	78	39.274	ENSLACG00000005839	DUS2	58	39.274	Latimeria_chalumnae
YNR015W	SMM1	78	40.333	ENSLOCG00000008097	dus2	56	40.333	Lepisosteus_oculatus
YNR015W	SMM1	78	38.742	ENSLAFG00000014594	DUS2	57	38.742	Loxodonta_africana
YNR015W	SMM1	78	38.742	ENSMFAG00000046270	DUS2	57	38.742	Macaca_fascicularis
YNR015W	SMM1	78	38.742	ENSMMUG00000021841	DUS2	58	38.742	Macaca_mulatta
YNR015W	SMM1	78	38.742	ENSMNEG00000032376	DUS2	57	38.742	Macaca_nemestrina
YNR015W	SMM1	69	36.330	ENSMLEG00000027642	DUS2	53	36.330	Mandrillus_leucophaeus
YNR015W	SMM1	78	38.636	ENSMAMG00000013827	dus2	58	38.636	Mastacembelus_armatus
YNR015W	SMM1	91	33.520	ENSMZEG00005024219	dus2	66	33.520	Maylandia_zebra
YNR015W	SMM1	78	40.066	ENSMGAG00000004019	DUS2	57	40.066	Meleagris_gallopavo
YNR015W	SMM1	78	39.073	ENSMICG00000011354	DUS2	57	39.073	Microcebus_murinus
YNR015W	SMM1	78	37.748	ENSMOCG00000012829	Dus2	57	37.748	Microtus_ochrogaster
YNR015W	SMM1	79	34.323	ENSMMOG00000018654	dus2	63	34.323	Mola_mola
YNR015W	SMM1	78	40.728	ENSMODG00000005295	DUS2	58	40.728	Monodelphis_domestica
YNR015W	SMM1	77	35.667	ENSMALG00000015752	dus2	58	35.667	Monopterus_albus
YNR015W	SMM1	78	38.411	ENSMUSG00000031901	Dus2	57	38.411	Mus_musculus
YNR015W	SMM1	78	39.073	MGP_PahariEiJ_G0023109	Dus2	57	39.073	Mus_pahari
YNR015W	SMM1	78	38.411	MGP_SPRETEiJ_G0032627	Dus2	57	38.411	Mus_spretus
YNR015W	SMM1	78	39.073	ENSMPUG00000006925	DUS2	57	39.073	Mustela_putorius_furo
YNR015W	SMM1	78	39.073	ENSMLUG00000005904	DUS2	57	39.073	Myotis_lucifugus
YNR015W	SMM1	69	36.704	ENSNGAG00000013003	Dus2	55	36.704	Nannospalax_galili
YNR015W	SMM1	77	34.343	ENSNBRG00000018031	dus2	58	34.343	Neolamprologus_brichardi
YNR015W	SMM1	73	36.879	ENSNLEG00000005100	DUS2	53	36.879	Nomascus_leucogenys
YNR015W	SMM1	78	32.119	ENSOPRG00000013920	DUS2	57	32.119	Ochotona_princeps
YNR015W	SMM1	79	35.738	ENSONIG00000010614	dus2	61	35.738	Oreochromis_niloticus
YNR015W	SMM1	78	39.073	ENSOCUG00000010043	DUS2	57	39.073	Oryctolagus_cuniculus
YNR015W	SMM1	79	36.721	ENSORLG00000000833	dus2	58	37.013	Oryzias_latipes
YNR015W	SMM1	79	36.393	ENSORLG00020003904	dus2	57	36.393	Oryzias_latipes_hni
YNR015W	SMM1	78	37.013	ENSORLG00015018864	dus2	58	37.013	Oryzias_latipes_hsok
YNR015W	SMM1	79	36.721	ENSOMEG00000020631	dus2	57	36.721	Oryzias_melastigma
YNR015W	SMM1	70	36.029	ENSOGAG00000016897	DUS2	55	36.029	Otolemur_garnettii
YNR015W	SMM1	78	39.404	ENSOARG00000003325	DUS2	57	39.404	Ovis_aries
YNR015W	SMM1	78	39.000	ENSPPAG00000029892	DUS2	57	39.000	Pan_paniscus
YNR015W	SMM1	78	38.742	ENSPPRG00000006182	DUS2	57	38.742	Panthera_pardus
YNR015W	SMM1	78	38.742	ENSPTIG00000021168	DUS2	57	38.742	Panthera_tigris_altaica
YNR015W	SMM1	78	39.000	ENSPTRG00000008259	DUS2	57	39.000	Pan_troglodytes
YNR015W	SMM1	78	38.742	ENSPANG00000022609	DUS2	57	38.742	Papio_anubis
YNR015W	SMM1	78	38.033	ENSPKIG00000021221	dus2	56	38.033	Paramormyrops_kingsleyae
YNR015W	SMM1	78	39.735	ENSPSIG00000003478	DUS2	56	39.867	Pelodiscus_sinensis
YNR015W	SMM1	79	38.264	ENSPMGG00000022665	dus2	58	38.264	Periophthalmus_magnuspinnatus
YNR015W	SMM1	78	38.411	ENSPEMG00000016993	Dus2	57	38.411	Peromyscus_maniculatus_bairdii
YNR015W	SMM1	78	40.924	ENSPCIG00000028064	DUS2	58	40.924	Phascolarctos_cinereus
YNR015W	SMM1	77	39.394	ENSPFOG00000000030	dus2	51	39.394	Poecilia_formosa
YNR015W	SMM1	79	34.754	ENSPREG00000001095	dus2	58	35.714	Poecilia_reticulata
YNR015W	SMM1	78	39.073	ENSPPYG00000007482	DUS2	57	39.073	Pongo_abelii
YNR015W	SMM1	69	36.330	ENSPCAG00000001415	DUS2	55	36.330	Procavia_capensis
YNR015W	SMM1	78	38.742	ENSPCOG00000026045	DUS2	57	38.742	Propithecus_coquereli
YNR015W	SMM1	78	39.404	ENSPVAG00000016624	DUS2	65	39.404	Pteropus_vampyrus
YNR015W	SMM1	91	33.520	ENSPNYG00000022914	dus2	66	33.520	Pundamilia_nyererei
YNR015W	SMM1	78	39.535	ENSPNAG00000030006	dus2	57	39.535	Pygocentrus_nattereri
YNR015W	SMM1	78	38.411	ENSRNOG00000019819	Dus2	57	38.411	Rattus_norvegicus
YNR015W	SMM1	78	38.742	ENSRBIG00000028682	DUS2	57	38.742	Rhinopithecus_bieti
YNR015W	SMM1	78	33.775	ENSRROG00000040280	DUS2	54	33.775	Rhinopithecus_roxellana
YNR015W	SMM1	78	32.450	ENSSBOG00000028381	DUS2	53	32.450	Saimiri_boliviensis_boliviensis
YNR015W	SMM1	78	41.060	ENSSHAG00000009332	DUS2	57	41.060	Sarcophilus_harrisii
YNR015W	SMM1	78	37.624	ENSSFOG00015010105	dus2	56	37.624	Scleropages_formosus
YNR015W	SMM1	91	35.475	ENSSMAG00000000641	dus2	64	35.735	Scophthalmus_maximus
YNR015W	SMM1	79	37.049	ENSSDUG00000017399	dus2	58	37.049	Seriola_dumerili
YNR015W	SMM1	79	37.049	ENSSLDG00000000751	dus2	58	37.049	Seriola_lalandi_dorsalis
YNR015W	SMM1	65	34.400	ENSSARG00000014170	DUS2	54	34.400	Sorex_araneus
YNR015W	SMM1	78	39.604	ENSSPUG00000012818	DUS2	57	39.604	Sphenodon_punctatus
YNR015W	SMM1	79	37.049	ENSSPAG00000003814	dus2	62	37.049	Stegastes_partitus
YNR015W	SMM1	78	39.735	ENSSSCG00000022098	DUS2	57	39.735	Sus_scrofa
YNR015W	SMM1	78	39.735	ENSTGUG00000007016	DUS2	63	39.735	Taeniopygia_guttata
YNR015W	SMM1	79	36.102	ENSTRUG00000022441	dus2	54	37.667	Takifugu_rubripes
YNR015W	SMM1	79	32.198	ENSTNIG00000005616	dus2	62	32.198	Tetraodon_nigroviridis
YNR015W	SMM1	78	36.424	ENSTBEG00000006443	DUS2	57	36.424	Tupaia_belangeri
YNR015W	SMM1	78	31.457	ENSTTRG00000014610	DUS2	68	31.457	Tursiops_truncatus
YNR015W	SMM1	78	39.073	ENSUAMG00000016114	DUS2	57	39.073	Ursus_americanus
YNR015W	SMM1	78	39.073	ENSUMAG00000019192	DUS2	57	39.073	Ursus_maritimus
YNR015W	SMM1	78	39.073	ENSVPAG00000002580	DUS2	57	39.073	Vicugna_pacos
YNR015W	SMM1	78	39.073	ENSVVUG00000012887	DUS2	57	39.073	Vulpes_vulpes
YNR015W	SMM1	91	35.493	ENSXETG00000005436	dus2	66	35.493	Xenopus_tropicalis
YNR015W	SMM1	76	39.456	ENSXCOG00000000879	dus2	57	39.456	Xiphophorus_couchianus
YNR015W	SMM1	76	39.456	ENSXMAG00000012268	dus2	56	39.456	Xiphophorus_maculatus