EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YOL066C (Gene tree)
Gene ID: -
Gene Symbol: RIB2
Alias: PUS8
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1776
Position: chrXV:202696-204471
Accession: S000005427
RBP type: canonical RBP
Summary: Bifunctional DRAP deaminase tRNA:pseudouridine synthase%3B the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs%3B RIB2 has a paralog%2C PUS9%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOL066C_mRNA	PseudoU_synth_2	PF00849.22	3.3e-31	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YOL066C_mRNA	-	1776	-	YOL066C_mRNA	591 (aa)	-	Q12362

Gene Model

Click here to download YOL066C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOL066C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YOL066C	RIB2	73	62.093	YDL036C	-	93	61.860
YOL066C	RIB2	61	35.049	YGR169C	-	97	35.049

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOL066C	RIB2	61	36.735	ENSAPOG00000000817	rpusd2	74	36.735	Acanthochromis_polyacanthus
YOL066C	RIB2	50	47.297	ENSAMEG00000016996	RPUSD2	53	47.297	Ailuropoda_melanoleuca
YOL066C	RIB2	61	39.089	ENSACIG00000024029	rpusd2	81	39.089	Amphilophus_citrinellus
YOL066C	RIB2	61	37.530	ENSAPLG00000004723	RPUSD2	96	37.915	Anas_platyrhynchos
YOL066C	RIB2	50	47.973	ENSANAG00000009691	RPUSD2	53	47.973	Aotus_nancymaae
YOL066C	RIB2	50	47.297	ENSBTAG00000003193	RPUSD2	53	47.297	Bos_taurus
YOL066C	RIB2	63	31.527	WBGene00019498	K07E8.7	98	31.538	Caenorhabditis_elegans
YOL066C	RIB2	50	47.973	ENSCJAG00000020841	RPUSD2	53	47.973	Callithrix_jacchus
YOL066C	RIB2	50	47.635	ENSCAFG00000009165	RPUSD2	53	47.635	Canis_familiaris
YOL066C	RIB2	50	47.635	ENSCAFG00020005849	RPUSD2	53	47.635	Canis_lupus_dingo
YOL066C	RIB2	50	46.959	ENSCHIG00000006152	RPUSD2	53	46.959	Capra_hircus
YOL066C	RIB2	50	47.635	ENSTSYG00000012844	RPUSD2	54	47.635	Carlito_syrichta
YOL066C	RIB2	50	48.311	ENSCPOG00000013201	RPUSD2	53	48.311	Cavia_porcellus
YOL066C	RIB2	50	47.973	ENSCCAG00000024378	RPUSD2	53	47.973	Cebus_capucinus
YOL066C	RIB2	50	47.635	ENSCATG00000043734	RPUSD2	53	47.635	Cercocebus_atys
YOL066C	RIB2	50	46.622	ENSCLAG00000011862	RPUSD2	54	46.622	Chinchilla_lanigera
YOL066C	RIB2	50	47.635	ENSCSAG00000007538	RPUSD2	57	47.635	Chlorocebus_sabaeus
YOL066C	RIB2	52	35.806	ENSCSAVG00000007812	-	99	35.806	Ciona_savignyi
YOL066C	RIB2	50	47.635	ENSCANG00000003659	RPUSD2	53	47.635	Colobus_angolensis_palliatus
YOL066C	RIB2	50	47.119	ENSCGRG00001009839	Rpusd2	51	47.119	Cricetulus_griseus_chok1gshd
YOL066C	RIB2	50	47.119	ENSCGRG00000012348	Rpusd2	52	47.119	Cricetulus_griseus_crigri
YOL066C	RIB2	61	37.767	ENSCVAG00000010848	rpusd2	74	37.767	Cyprinodon_variegatus
YOL066C	RIB2	50	46.780	ENSDNOG00000047745	RPUSD2	54	46.780	Dasypus_novemcinctus
YOL066C	RIB2	51	45.484	FBgn0032256	RluA-2	64	45.484	Drosophila_melanogaster
YOL066C	RIB2	50	47.297	ENSETEG00000008581	RPUSD2	54	47.297	Echinops_telfairi
YOL066C	RIB2	50	47.297	ENSEASG00005016463	RPUSD2	52	47.297	Equus_asinus_asinus
YOL066C	RIB2	50	47.297	ENSECAG00000024178	RPUSD2	52	47.297	Equus_caballus
YOL066C	RIB2	50	42.617	ENSELUG00000016786	rpusd2	53	42.617	Esox_lucius
YOL066C	RIB2	50	47.297	ENSFCAG00000040796	RPUSD2	53	47.297	Felis_catus
YOL066C	RIB2	50	46.959	ENSFDAG00000003070	RPUSD2	57	46.959	Fukomys_damarensis
YOL066C	RIB2	61	37.685	ENSGAFG00000003390	rpusd2	72	37.685	Gambusia_affinis
YOL066C	RIB2	50	44.295	ENSGACG00000008656	rpusd2	56	44.295	Gasterosteus_aculeatus
YOL066C	RIB2	50	44.966	ENSIPUG00000021006	rpusd2	50	44.966	Ictalurus_punctatus
YOL066C	RIB2	50	46.622	ENSJJAG00000023160	Rpusd2	55	46.622	Jaculus_jaculus
YOL066C	RIB2	50	43.960	ENSLOCG00000014755	rpusd2	59	43.960	Lepisosteus_oculatus
YOL066C	RIB2	50	47.635	ENSLAFG00000015588	RPUSD2	55	47.635	Loxodonta_africana
YOL066C	RIB2	50	47.635	ENSMFAG00000045062	RPUSD2	53	47.635	Macaca_fascicularis
YOL066C	RIB2	50	47.635	ENSMMUG00000001483	RPUSD2	53	47.635	Macaca_mulatta
YOL066C	RIB2	50	40.604	ENSMNEG00000041429	RPUSD2	53	40.604	Macaca_nemestrina
YOL066C	RIB2	50	48.311	ENSMAUG00000020467	Rpusd2	52	48.311	Mesocricetus_auratus
YOL066C	RIB2	50	47.635	ENSMICG00000028637	RPUSD2	53	47.635	Microcebus_murinus
YOL066C	RIB2	50	47.458	ENSMOCG00000020061	Rpusd2	52	47.458	Microtus_ochrogaster
YOL066C	RIB2	50	45.638	ENSMMOG00000012020	rpusd2	52	45.638	Mola_mola
YOL066C	RIB2	50	47.973	MGP_CAROLIEiJ_G0024130	Rpusd2	53	47.973	Mus_caroli
YOL066C	RIB2	50	47.973	ENSMUSG00000027324	Rpusd2	52	47.973	Mus_musculus
YOL066C	RIB2	50	47.635	MGP_PahariEiJ_G0025573	Rpusd2	52	47.635	Mus_pahari
YOL066C	RIB2	50	47.973	MGP_SPRETEiJ_G0025046	Rpusd2	53	47.973	Mus_spretus
YOL066C	RIB2	50	47.635	ENSMPUG00000008517	RPUSD2	53	47.635	Mustela_putorius_furo
YOL066C	RIB2	50	47.973	ENSMLUG00000007971	RPUSD2	57	47.973	Myotis_lucifugus
YOL066C	RIB2	50	46.959	ENSNGAG00000014126	Rpusd2	53	46.959	Nannospalax_galili
YOL066C	RIB2	61	37.232	ENSNBRG00000010070	rpusd2	73	37.232	Neolamprologus_brichardi
YOL066C	RIB2	50	48.649	ENSOPRG00000014177	-	54	48.649	Ochotona_princeps
YOL066C	RIB2	50	47.635	ENSODEG00000017193	RPUSD2	55	47.635	Octodon_degus
YOL066C	RIB2	60	37.897	ENSONIG00000020102	rpusd2	80	37.897	Oreochromis_niloticus
YOL066C	RIB2	50	47.635	ENSOCUG00000015745	RPUSD2	52	47.635	Oryctolagus_cuniculus
YOL066C	RIB2	56	41.570	ENSORLG00000015516	rpusd2	51	47.312	Oryzias_latipes
YOL066C	RIB2	56	41.279	ENSORLG00020010533	rpusd2	51	46.953	Oryzias_latipes_hni
YOL066C	RIB2	61	38.293	ENSOMEG00000007355	rpusd2	67	38.293	Oryzias_melastigma
YOL066C	RIB2	50	47.297	ENSOGAG00000004867	RPUSD2	56	47.297	Otolemur_garnettii
YOL066C	RIB2	50	47.297	ENSOARG00000020235	RPUSD2	53	47.297	Ovis_aries
YOL066C	RIB2	50	47.297	ENSPPRG00000010446	RPUSD2	53	47.297	Panthera_pardus
YOL066C	RIB2	50	47.297	ENSPTIG00000013316	RPUSD2	53	47.297	Panthera_tigris_altaica
YOL066C	RIB2	50	47.973	ENSPANG00000019339	RPUSD2	53	47.973	Papio_anubis
YOL066C	RIB2	60	41.129	ENSPMGG00000018165	rpusd2	69	41.129	Periophthalmus_magnuspinnatus
YOL066C	RIB2	50	47.973	ENSPEMG00000012878	Rpusd2	54	47.973	Peromyscus_maniculatus_bairdii
YOL066C	RIB2	61	41.131	ENSPCIG00000023199	RPUSD2	73	41.131	Phascolarctos_cinereus
YOL066C	RIB2	50	45.973	ENSPFOG00000006829	rpusd2	54	45.973	Poecilia_formosa
YOL066C	RIB2	50	45.973	ENSPLAG00000022914	rpusd2	61	45.973	Poecilia_latipinna
YOL066C	RIB2	50	45.973	ENSPMEG00000009835	rpusd2	61	45.973	Poecilia_mexicana
YOL066C	RIB2	50	45.973	ENSPREG00000016441	rpusd2	52	45.973	Poecilia_reticulata
YOL066C	RIB2	50	47.635	ENSPVAG00000001837	RPUSD2	53	47.635	Pteropus_vampyrus
YOL066C	RIB2	61	38.386	ENSPNYG00000021507	rpusd2	80	38.386	Pundamilia_nyererei
YOL066C	RIB2	50	47.635	ENSRNOG00000010528	LOC100911166	52	47.635	Rattus_norvegicus
YOL066C	RIB2	50	47.635	ENSRNOG00000046797	Rpusd2	52	47.635	Rattus_norvegicus
YOL066C	RIB2	50	47.635	ENSRBIG00000030813	RPUSD2	53	47.635	Rhinopithecus_bieti
YOL066C	RIB2	50	47.297	ENSRROG00000026664	RPUSD2	53	47.297	Rhinopithecus_roxellana
YOL066C	RIB2	50	47.973	ENSSBOG00000035031	RPUSD2	53	47.973	Saimiri_boliviensis_boliviensis
YOL066C	RIB2	50	44.295	ENSSMAG00000000903	rpusd2	55	44.295	Scophthalmus_maximus
YOL066C	RIB2	50	46.959	ENSSSCG00000036700	RPUSD2	53	46.959	Sus_scrofa
YOL066C	RIB2	50	45.973	ENSTRUG00000025880	rpusd2	55	45.973	Takifugu_rubripes
YOL066C	RIB2	50	45.973	ENSTNIG00000017329	rpusd2	58	45.973	Tetraodon_nigroviridis
YOL066C	RIB2	50	36.735	ENSTBEG00000007933	RPUSD2	53	36.735	Tupaia_belangeri
YOL066C	RIB2	61	38.702	ENSVPAG00000003844	RPUSD2	74	38.702	Vicugna_pacos
YOL066C	RIB2	50	47.973	ENSVVUG00000026590	RPUSD2	53	47.973	Vulpes_vulpes
YOL066C	RIB2	61	39.163	ENSXMAG00000021821	rpusd2	82	39.163	Xiphophorus_maculatus