EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOL077C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Nucleolar protein%3B constituent of 66S pre-ribosomal particles%3B depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits%3B possesses a sigma(70)-like RNA-binding motif
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 876 bases
Position: chrXV:185848-186723
Accession: S000005437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOL077C_mRNA	Brix	PF04427.18	1.3e-41	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YOL077C_mRNA	-	876	-	YOL077C_mRNA	291 (aa)	-	Q08235

Gene Model

Click here to download YOL077C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOL077C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOL077C	-	90	47.909	ENSG00000113460	BRIX1	71	47.909	Homo_sapiens
YOL077C	-	86	49.801	ENSAPOG00000020334	bxdc2	70	49.801	Acanthochromis_polyacanthus
YOL077C	-	90	48.289	ENSAMEG00000003295	BRIX1	71	48.289	Ailuropoda_melanoleuca
YOL077C	-	86	48.193	ENSACIG00000017003	bxdc2	71	48.193	Amphilophus_citrinellus
YOL077C	-	86	49.801	ENSAOCG00000000941	bxdc2	70	49.801	Amphiprion_ocellaris
YOL077C	-	86	49.801	ENSAPEG00000017124	bxdc2	70	49.801	Amphiprion_percula
YOL077C	-	92	46.014	ENSATEG00000016635	bxdc2	70	48.606	Anabas_testudineus
YOL077C	-	91	41.509	ENSAPLG00000006647	BRIX1	85	41.509	Anas_platyrhynchos
YOL077C	-	90	48.302	ENSACAG00000008586	BRIX1	70	48.302	Anolis_carolinensis
YOL077C	-	90	46.520	ENSANAG00000022329	-	72	46.520	Aotus_nancymaae
YOL077C	-	90	42.586	ENSANAG00000010505	-	70	42.586	Aotus_nancymaae
YOL077C	-	90	47.529	ENSACLG00000005213	bxdc2	73	47.529	Astatotilapia_calliptera
YOL077C	-	88	49.035	ENSAMXG00000043121	bxdc2	72	49.035	Astyanax_mexicanus
YOL077C	-	90	47.909	ENSBTAG00000019211	BRIX1	71	47.909	Bos_taurus
YOL077C	-	80	44.444	WBGene00019678	K12H4.3	63	44.444	Caenorhabditis_elegans
YOL077C	-	90	48.289	ENSCJAG00000018506	-	71	48.289	Callithrix_jacchus
YOL077C	-	90	47.529	ENSCJAG00000007390	-	71	47.529	Callithrix_jacchus
YOL077C	-	90	47.148	ENSCAFG00000018797	BRIX1	71	47.148	Canis_familiaris
YOL077C	-	90	43.346	ENSCAFG00020016783	BRIX1	70	43.346	Canis_lupus_dingo
YOL077C	-	90	46.008	ENSCHIG00000015024	BRIX1	70	46.008	Capra_hircus
YOL077C	-	90	47.529	ENSTSYG00000002898	BRIX1	71	47.529	Carlito_syrichta
YOL077C	-	89	37.308	ENSCAPG00000009776	BRIX1	79	37.308	Cavia_aperea
YOL077C	-	90	47.148	ENSCPOG00000022064	BRIX1	73	47.148	Cavia_porcellus
YOL077C	-	90	47.909	ENSCCAG00000033405	BRIX1	71	47.909	Cebus_capucinus
YOL077C	-	86	49.004	ENSCATG00000037721	BRIX1	68	49.004	Cercocebus_atys
YOL077C	-	90	47.529	ENSCLAG00000008124	BRIX1	71	47.529	Chinchilla_lanigera
YOL077C	-	90	47.529	ENSCSAG00000017117	BRIX1	71	47.529	Chlorocebus_sabaeus
YOL077C	-	90	48.289	ENSCHOG00000001790	-	71	48.289	Choloepus_hoffmanni
YOL077C	-	89	40.698	ENSCHOG00000012227	-	70	40.698	Choloepus_hoffmanni
YOL077C	-	89	48.077	ENSCPBG00000021309	BRIX1	71	48.077	Chrysemys_picta_bellii
YOL077C	-	88	45.525	ENSCING00000001695	-	92	45.525	Ciona_intestinalis
YOL077C	-	88	45.525	ENSCSAVG00000008644	-	80	45.525	Ciona_savignyi
YOL077C	-	90	47.909	ENSCANG00000022969	BRIX1	70	47.909	Colobus_angolensis_palliatus
YOL077C	-	90	47.529	ENSCGRG00001007932	Brix1	71	47.529	Cricetulus_griseus_chok1gshd
YOL077C	-	90	47.529	ENSCGRG00000016743	Brix1	71	47.529	Cricetulus_griseus_crigri
YOL077C	-	86	48.606	ENSCSEG00000019821	bxdc2	70	48.606	Cynoglossus_semilaevis
YOL077C	-	91	50.943	ENSCVAG00000016942	bxdc2	74	50.943	Cyprinodon_variegatus
YOL077C	-	91	49.811	ENSDARG00000098935	bxdc2	66	49.811	Danio_rerio
YOL077C	-	90	47.909	ENSDNOG00000002878	BRIX1	77	45.583	Dasypus_novemcinctus
YOL077C	-	90	49.430	ENSDORG00000009369	Brix1	71	49.430	Dipodomys_ordii
YOL077C	-	96	42.199	FBgn0035524	CG11583	71	43.071	Drosophila_melanogaster
YOL077C	-	90	46.388	ENSETEG00000017842	-	72	46.388	Echinops_telfairi
YOL077C	-	90	45.247	ENSETEG00000017329	-	70	45.247	Echinops_telfairi
YOL077C	-	88	47.860	ENSEBUG00000007717	BRIX1	78	47.860	Eptatretus_burgeri
YOL077C	-	90	47.909	ENSEASG00005014968	BRIX1	71	47.909	Equus_asinus_asinus
YOL077C	-	90	47.909	ENSECAG00000000377	BRIX1	65	47.909	Equus_caballus
YOL077C	-	90	41.445	ENSEEUG00000008350	BRIX1	71	41.445	Erinaceus_europaeus
YOL077C	-	87	47.619	ENSELUG00000009050	bxdc2	67	47.619	Esox_lucius
YOL077C	-	96	46.996	ENSFCAG00000042465	BRIX1	77	46.996	Felis_catus
YOL077C	-	83	50.207	ENSFALG00000002106	BRIX1	63	50.207	Ficedula_albicollis
YOL077C	-	90	48.289	ENSFDAG00000018960	BRIX1	71	48.289	Fukomys_damarensis
YOL077C	-	90	48.669	ENSFHEG00000004488	bxdc2	72	48.669	Fundulus_heteroclitus
YOL077C	-	87	48.810	ENSGMOG00000002425	bxdc2	84	48.810	Gadus_morhua
YOL077C	-	91	47.925	ENSGALG00000003373	BRIX1	72	47.925	Gallus_gallus
YOL077C	-	90	49.430	ENSGAFG00000011947	bxdc2	73	49.430	Gambusia_affinis
YOL077C	-	84	49.412	ENSGACG00000016491	bxdc2	71	49.412	Gasterosteus_aculeatus
YOL077C	-	89	48.462	ENSGAGG00000011959	BRIX1	71	48.462	Gopherus_agassizii
YOL077C	-	90	47.909	ENSGGOG00000004225	BRIX1	71	47.909	Gorilla_gorilla
YOL077C	-	90	47.529	ENSHBUG00000017923	bxdc2	73	47.529	Haplochromis_burtoni
YOL077C	-	90	37.931	ENSHGLG00000017782	-	70	37.931	Heterocephalus_glaber_female
YOL077C	-	90	47.909	ENSHGLG00000004566	BRIX1	71	47.909	Heterocephalus_glaber_female
YOL077C	-	90	41.825	ENSHGLG00000000296	-	71	41.825	Heterocephalus_glaber_female
YOL077C	-	91	34.586	ENSHGLG00000010349	-	73	34.586	Heterocephalus_glaber_female
YOL077C	-	90	34.981	ENSHGLG00000002055	-	66	34.981	Heterocephalus_glaber_female
YOL077C	-	90	47.909	ENSHGLG00100002204	-	71	47.909	Heterocephalus_glaber_male
YOL077C	-	90	43.939	ENSHGLG00100000068	-	71	43.939	Heterocephalus_glaber_male
YOL077C	-	89	34.483	ENSHGLG00100001527	-	68	34.091	Heterocephalus_glaber_male
YOL077C	-	89	41.923	ENSHGLG00100000909	-	57	41.445	Heterocephalus_glaber_male
YOL077C	-	90	46.667	ENSHCOG00000011674	bxdc2	75	46.667	Hippocampus_comes
YOL077C	-	87	48.810	ENSIPUG00000015099	brix1	69	48.810	Ictalurus_punctatus
YOL077C	-	89	48.077	ENSSTOG00000009600	BRIX1	71	47.529	Ictidomys_tridecemlineatus
YOL077C	-	89	43.295	ENSJJAG00000009708	-	75	43.295	Jaculus_jaculus
YOL077C	-	96	41.489	ENSJJAG00000004662	-	75	41.489	Jaculus_jaculus
YOL077C	-	82	50.413	ENSJJAG00000001806	-	87	50.413	Jaculus_jaculus
YOL077C	-	96	44.366	ENSJJAG00000001423	-	77	44.366	Jaculus_jaculus
YOL077C	-	87	47.638	ENSKMAG00000014487	bxdc2	70	47.638	Kryptolebias_marmoratus
YOL077C	-	86	48.207	ENSLBEG00000018123	bxdc2	70	48.207	Labrus_bergylta
YOL077C	-	87	48.819	ENSLACG00000005971	BRIX1	70	48.819	Latimeria_chalumnae
YOL077C	-	90	49.237	ENSLOCG00000011774	bxdc2	71	49.237	Lepisosteus_oculatus
YOL077C	-	90	47.909	ENSLAFG00000007249	BRIX1	71	47.909	Loxodonta_africana
YOL077C	-	90	47.909	ENSMFAG00000033107	BRIX1	71	47.909	Macaca_fascicularis
YOL077C	-	90	47.909	ENSMMUG00000038794	BRIX1	71	47.909	Macaca_mulatta
YOL077C	-	90	47.909	ENSMNEG00000039324	BRIX1	71	47.909	Macaca_nemestrina
YOL077C	-	90	47.909	ENSMLEG00000041564	BRIX1	71	47.909	Mandrillus_leucophaeus
YOL077C	-	86	49.801	ENSMAMG00000015004	bxdc2	69	49.801	Mastacembelus_armatus
YOL077C	-	90	47.529	ENSMZEG00005019808	bxdc2	73	47.529	Maylandia_zebra
YOL077C	-	57	46.746	ENSMGAG00000003156	BRIX1	79	44.828	Meleagris_gallopavo
YOL077C	-	90	47.909	ENSMAUG00000014172	Brix1	84	47.909	Mesocricetus_auratus
YOL077C	-	90	47.909	ENSMICG00000005672	BRIX1	71	47.909	Microcebus_murinus
YOL077C	-	90	47.148	ENSMOCG00000018798	Brix1	71	47.148	Microtus_ochrogaster
YOL077C	-	86	49.801	ENSMMOG00000000861	bxdc2	70	49.801	Mola_mola
YOL077C	-	97	46.503	ENSMODG00000020386	BRIX1	72	48.134	Monodelphis_domestica
YOL077C	-	86	45.817	ENSMALG00000020437	bxdc2	68	45.817	Monopterus_albus
YOL077C	-	90	47.909	MGP_CAROLIEiJ_G0019665	Brix1	71	47.909	Mus_caroli
YOL077C	-	90	47.909	ENSMUSG00000022247	Brix1	71	47.909	Mus_musculus
YOL077C	-	90	47.909	MGP_SPRETEiJ_G0020562	Brix1	71	47.909	Mus_spretus
YOL077C	-	90	48.669	ENSMPUG00000015137	BRIX1	71	48.669	Mustela_putorius_furo
YOL077C	-	76	52.703	ENSMLUG00000029255	BRIX1	80	52.703	Myotis_lucifugus
YOL077C	-	90	47.529	ENSNGAG00000002585	-	73	47.529	Nannospalax_galili
YOL077C	-	90	47.909	ENSNGAG00000021812	-	71	47.909	Nannospalax_galili
YOL077C	-	90	47.529	ENSNBRG00000008850	bxdc2	69	47.529	Neolamprologus_brichardi
YOL077C	-	90	45.627	ENSNLEG00000032149	BRIX1	70	45.627	Nomascus_leucogenys
YOL077C	-	74	48.387	ENSMEUG00000016482	BRIX1	57	48.387	Notamacropus_eugenii
YOL077C	-	73	47.170	ENSOPRG00000012886	BRIX1	99	47.170	Ochotona_princeps
YOL077C	-	89	43.511	ENSODEG00000010997	-	72	43.019	Octodon_degus
YOL077C	-	86	48.000	ENSODEG00000019171	-	82	48.000	Octodon_degus
YOL077C	-	52	50.331	ENSODEG00000002389	-	56	50.331	Octodon_degus
YOL077C	-	90	47.529	ENSONIG00000007725	bxdc2	71	47.529	Oreochromis_niloticus
YOL077C	-	91	47.940	ENSOANG00000014525	-	85	47.940	Ornithorhynchus_anatinus
YOL077C	-	90	47.909	ENSOCUG00000014478	BRIX1	71	47.909	Oryctolagus_cuniculus
YOL077C	-	86	51.004	ENSORLG00000005895	bxdc2	70	51.004	Oryzias_latipes
YOL077C	-	86	51.004	ENSORLG00020005201	bxdc2	70	51.004	Oryzias_latipes_hni
YOL077C	-	86	50.602	ENSORLG00015011685	bxdc2	70	50.602	Oryzias_latipes_hsok
YOL077C	-	90	48.855	ENSOMEG00000007680	bxdc2	73	48.855	Oryzias_melastigma
YOL077C	-	90	47.529	ENSOGAG00000014827	BRIX1	71	47.529	Otolemur_garnettii
YOL077C	-	90	47.909	ENSOARG00000011539	BRIX1	71	47.909	Ovis_aries
YOL077C	-	90	47.909	ENSPPAG00000038183	BRIX1	71	47.909	Pan_paniscus
YOL077C	-	96	46.643	ENSPPRG00000023961	BRIX1	77	46.643	Panthera_pardus
YOL077C	-	96	46.996	ENSPTIG00000006466	BRIX1	77	46.996	Panthera_tigris_altaica
YOL077C	-	90	47.909	ENSPTRG00000016784	BRIX1	71	47.909	Pan_troglodytes
YOL077C	-	90	47.909	ENSPANG00000016504	BRIX1	70	47.909	Papio_anubis
YOL077C	-	90	46.388	ENSPKIG00000005920	bxdc2	62	46.388	Paramormyrops_kingsleyae
YOL077C	-	82	47.500	ENSPSIG00000011219	BRIX1	83	47.500	Pelodiscus_sinensis
YOL077C	-	86	45.020	ENSPMGG00000022988	bxdc2	68	45.020	Periophthalmus_magnuspinnatus
YOL077C	-	90	47.529	ENSPEMG00000016920	Brix1	71	47.529	Peromyscus_maniculatus_bairdii
YOL077C	-	52	51.974	ENSPMAG00000004076	-	99	51.974	Petromyzon_marinus
YOL077C	-	91	48.881	ENSPCIG00000022778	BRIX1	72	48.881	Phascolarctos_cinereus
YOL077C	-	91	48.120	ENSPFOG00000008577	bxdc2	60	48.120	Poecilia_formosa
YOL077C	-	90	48.669	ENSPLAG00000006772	bxdc2	66	48.669	Poecilia_latipinna
YOL077C	-	86	49.801	ENSPMEG00000020229	bxdc2	64	49.801	Poecilia_mexicana
YOL077C	-	90	49.049	ENSPREG00000017461	bxdc2	66	49.049	Poecilia_reticulata
YOL077C	-	90	46.388	ENSPPYG00000015390	BRIX1	71	46.388	Pongo_abelii
YOL077C	-	90	47.909	ENSPCOG00000018281	-	71	47.909	Propithecus_coquereli
YOL077C	-	90	37.262	ENSPCOG00000016748	-	74	37.262	Propithecus_coquereli
YOL077C	-	90	46.008	ENSPVAG00000016925	BRIX1	84	46.008	Pteropus_vampyrus
YOL077C	-	90	47.529	ENSPNYG00000007707	bxdc2	73	47.529	Pundamilia_nyererei
YOL077C	-	89	48.855	ENSPNAG00000010431	bxdc2	71	48.855	Pygocentrus_nattereri
YOL077C	-	90	47.148	ENSRNOG00000018021	Brix1	71	47.148	Rattus_norvegicus
YOL077C	-	90	47.529	ENSRBIG00000042083	BRIX1	70	47.529	Rhinopithecus_bieti
YOL077C	-	90	47.909	ENSRROG00000031228	BRIX1	70	47.909	Rhinopithecus_roxellana
YOL077C	-	90	47.909	ENSSBOG00000033290	-	71	47.909	Saimiri_boliviensis_boliviensis
YOL077C	-	90	47.148	ENSSBOG00000017845	-	71	47.148	Saimiri_boliviensis_boliviensis
YOL077C	-	91	48.699	ENSSHAG00000010794	BRIX1	72	48.699	Sarcophilus_harrisii
YOL077C	-	90	47.529	ENSSFOG00015022435	brix1	73	47.529	Scleropages_formosus
YOL077C	-	90	48.092	ENSSMAG00000005909	bxdc2	73	48.092	Scophthalmus_maximus
YOL077C	-	87	49.206	ENSSDUG00000016234	bxdc2	70	49.206	Seriola_dumerili
YOL077C	-	87	49.206	ENSSLDG00000007044	bxdc2	69	49.799	Seriola_lalandi_dorsalis
YOL077C	-	90	47.529	ENSSARG00000009879	BRIX1	70	47.529	Sorex_araneus
YOL077C	-	89	48.077	ENSSPUG00000019166	-	83	48.077	Sphenodon_punctatus
YOL077C	-	86	48.606	ENSSPUG00000000011	-	69	48.606	Sphenodon_punctatus
YOL077C	-	86	49.402	ENSSPAG00000006309	bxdc2	70	49.402	Stegastes_partitus
YOL077C	-	90	48.289	ENSSSCG00000016827	BRIX1	70	48.289	Sus_scrofa
YOL077C	-	91	46.992	ENSTGUG00000001961	BRIX1	72	47.170	Taeniopygia_guttata
YOL077C	-	86	49.402	ENSTRUG00000011403	bxdc2	70	49.402	Takifugu_rubripes
YOL077C	-	87	49.213	ENSTNIG00000007517	bxdc2	68	49.801	Tetraodon_nigroviridis
YOL077C	-	90	44.106	ENSTBEG00000011652	BRIX1	84	44.106	Tupaia_belangeri
YOL077C	-	90	47.529	ENSTTRG00000003262	BRIX1	71	47.529	Tursiops_truncatus
YOL077C	-	90	40.909	ENSUAMG00000022481	BRIX1	70	40.909	Ursus_americanus
YOL077C	-	90	48.669	ENSUMAG00000012900	BRIX1	71	48.669	Ursus_maritimus
YOL077C	-	90	42.966	ENSVVUG00000022099	BRIX1	70	42.966	Vulpes_vulpes
YOL077C	-	89	49.231	ENSXETG00000000703	brix1	73	49.231	Xenopus_tropicalis
YOL077C	-	90	49.049	ENSXCOG00000002461	bxdc2	72	49.049	Xiphophorus_couchianus
YOL077C	-	90	49.049	ENSXMAG00000004284	bxdc2	62	49.049	Xiphophorus_maculatus