EuRBPDB

Description

Ensembl ID: YOL115W (Gene tree)
Gene ID: -
Gene Symbol: PAP2
Alias: TRF4
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1755
Position: chrXV:101475-103229
Accession: S000005475
RBP type: canonical RBP
Summary: Non-canonical poly(A) polymerase%3B involved in nuclear RNA degradation as a component of TRAMP%3B catalyzes polyadenylation of hypomodified tRNAs%2C and snoRNA and rRNA precursors%3B required for mRNA surveillance and maintenance of genome integrity%2C serving as a link between RNA and DNA metabolism%3B overlapping but non-redundant functions with Trf5p%3B relocalizes to cytosol in response to hypoxia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOL115W_mRNA	PAP_assoc	PF03828.19	4.4e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YOL115W_mRNA	-	1755	-	YOL115W_mRNA	584 (aa)	-	P53632

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YOL115W	PAP2	70	67.619	YNL299W	-	57	73.003

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOL115W	PAP2	56	36.061	ENSCING00000012738	-	77	36.943	Ciona_intestinalis