EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOR001W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2202
Position: chrXV:326832-329033
Accession: S000005527
RBP type: canonical RBP
Summary: Nuclear exosome exonuclease component%3B has 3'-5' exonuclease activity that is regulated by Lrp1p%3B involved in RNA processing%2C maturation%2C surveillance%2C degradation%2C tethering%2C and export%3B role in sn/snoRNAs precursor degradation%3B forms a stable heterodimer with Lrp1p%3B has similarity to E. coli RNase D and to human PM-Sc1 100 (EXOSC10)%3B mutant displays reduced transcription elongation in the G-less-based

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR001W_mRNA	HRDC	PF00570.23	1.9e-11	1	1
YOR001W_mRNA	PMC2NT	PF08066.12	1.2e-20	1	1
YOR001W_mRNA	DNA_pol_A_exo1	PF01612.20	6.7e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR001W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOR001W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR001W	-	71	32.373	ENSG00000171824	EXOSC10	65	32.373	Homo_sapiens
YOR001W	-	68	36.162	ENSAPOG00000013304	exosc10	65	36.162	Acanthochromis_polyacanthus
YOR001W	-	71	33.220	ENSAMEG00000009546	EXOSC10	63	33.220	Ailuropoda_melanoleuca
YOR001W	-	95	30.637	ENSACIG00000020455	exosc10	85	30.872	Amphilophus_citrinellus
YOR001W	-	68	35.727	ENSAOCG00000018823	exosc10	65	35.727	Amphiprion_ocellaris
YOR001W	-	68	35.727	ENSAPEG00000017786	exosc10	65	35.727	Amphiprion_percula
YOR001W	-	71	35.355	ENSATEG00000017271	exosc10	64	35.355	Anabas_testudineus
YOR001W	-	55	36.854	ENSANAG00000031112	EXOSC10	52	36.854	Aotus_nancymaae
YOR001W	-	68	35.912	ENSACLG00000025226	exosc10	62	35.912	Astatotilapia_calliptera
YOR001W	-	70	33.860	ENSBTAG00000002590	EXOSC10	80	33.860	Bos_taurus
YOR001W	-	71	33.220	ENSCJAG00000002327	EXOSC10	65	33.220	Callithrix_jacchus
YOR001W	-	68	34.234	ENSCAFG00000016721	EXOSC10	59	34.234	Canis_familiaris
YOR001W	-	68	34.234	ENSCAFG00020002481	EXOSC10	59	34.234	Canis_lupus_dingo
YOR001W	-	68	34.595	ENSCHIG00000020022	EXOSC10	64	34.595	Capra_hircus
YOR001W	-	56	36.443	ENSTSYG00000006937	EXOSC10	53	36.443	Carlito_syrichta
YOR001W	-	68	33.757	ENSCAPG00000006494	EXOSC10	65	33.757	Cavia_aperea
YOR001W	-	68	33.757	ENSCPOG00000011628	EXOSC10	62	33.757	Cavia_porcellus
YOR001W	-	55	37.079	ENSCCAG00000023223	EXOSC10	53	37.079	Cebus_capucinus
YOR001W	-	71	32.542	ENSCATG00000039000	EXOSC10	81	33.216	Cercocebus_atys
YOR001W	-	68	33.688	ENSCLAG00000005283	EXOSC10	62	33.688	Chinchilla_lanigera
YOR001W	-	71	32.542	ENSCSAG00000000788	EXOSC10	63	32.542	Chlorocebus_sabaeus
YOR001W	-	71	33.277	ENSCHOG00000012713	EXOSC10	63	33.277	Choloepus_hoffmanni
YOR001W	-	54	40.371	ENSCSAVG00000009049	-	72	40.371	Ciona_savignyi
YOR001W	-	71	32.542	ENSCANG00000042813	EXOSC10	65	32.542	Colobus_angolensis_palliatus
YOR001W	-	68	32.916	ENSCGRG00001018469	Exosc10	62	32.916	Cricetulus_griseus_chok1gshd
YOR001W	-	68	32.916	ENSCGRG00000002278	Exosc10	63	32.916	Cricetulus_griseus_crigri
YOR001W	-	68	35.727	ENSCSEG00000005346	exosc10	59	35.727	Cynoglossus_semilaevis
YOR001W	-	68	35.856	ENSCVAG00000016429	exosc10	65	35.676	Cyprinodon_variegatus
YOR001W	-	68	33.996	ENSDARG00000037708	exosc10	59	33.454	Danio_rerio
YOR001W	-	71	32.823	ENSDNOG00000011301	EXOSC10	64	32.823	Dasypus_novemcinctus
YOR001W	-	68	33.575	ENSDORG00000003769	Exosc10	63	33.648	Dipodomys_ordii
YOR001W	-	68	34.043	ENSETEG00000000830	EXOSC10	63	34.458	Echinops_telfairi
YOR001W	-	68	34.829	ENSEASG00005018716	EXOSC10	70	34.829	Equus_asinus_asinus
YOR001W	-	68	34.520	ENSECAG00000011639	EXOSC10	61	34.520	Equus_caballus
YOR001W	-	71	31.005	ENSEEUG00000001166	EXOSC10	65	31.005	Erinaceus_europaeus
YOR001W	-	52	40.146	ENSELUG00000012870	exosc10	50	40.146	Esox_lucius
YOR001W	-	71	33.506	ENSFCAG00000000052	EXOSC10	66	33.506	Felis_catus
YOR001W	-	71	34.179	ENSFALG00000010287	EXOSC10	63	34.179	Ficedula_albicollis
YOR001W	-	68	33.631	ENSFDAG00000002942	EXOSC10	62	33.631	Fukomys_damarensis
YOR001W	-	52	41.363	ENSFHEG00000010678	exosc10	64	35.663	Fundulus_heteroclitus
YOR001W	-	64	33.852	ENSGMOG00000006131	exosc10	62	33.852	Gadus_morhua
YOR001W	-	68	36.298	ENSGAFG00000019222	exosc10	66	36.182	Gambusia_affinis
YOR001W	-	68	35.283	ENSGACG00000007037	exosc10	62	35.283	Gasterosteus_aculeatus
YOR001W	-	72	31.904	ENSGAGG00000000251	EXOSC10	62	33.892	Gopherus_agassizii
YOR001W	-	68	33.216	ENSGGOG00000010572	EXOSC10	62	33.216	Gorilla_gorilla
YOR001W	-	68	35.390	ENSHBUG00000020328	exosc10	62	35.390	Haplochromis_burtoni
YOR001W	-	68	33.575	ENSHGLG00000011944	EXOSC10	63	33.575	Heterocephalus_glaber_female
YOR001W	-	68	33.575	ENSHGLG00100014444	EXOSC10	63	33.575	Heterocephalus_glaber_male
YOR001W	-	68	35.273	ENSHCOG00000016164	exosc10	60	35.273	Hippocampus_comes
YOR001W	-	68	33.694	ENSIPUG00000021971	exosc10	59	33.636	Ictalurus_punctatus
YOR001W	-	71	33.219	ENSSTOG00000005459	EXOSC10	65	33.219	Ictidomys_tridecemlineatus
YOR001W	-	70	33.625	ENSJJAG00000013716	Exosc10	64	33.625	Jaculus_jaculus
YOR001W	-	68	34.720	ENSKMAG00000015540	exosc10	60	34.664	Kryptolebias_marmoratus
YOR001W	-	68	35.531	ENSLBEG00000022229	exosc10	60	35.531	Labrus_bergylta
YOR001W	-	68	33.577	ENSLACG00000016691	EXOSC10	60	33.577	Latimeria_chalumnae
YOR001W	-	68	33.996	ENSLOCG00000006443	exosc10	60	33.996	Lepisosteus_oculatus
YOR001W	-	68	34.103	ENSLAFG00000016894	EXOSC10	61	34.103	Loxodonta_africana
YOR001W	-	71	32.542	ENSMFAG00000038874	EXOSC10	65	32.542	Macaca_fascicularis
YOR001W	-	68	33.216	ENSMMUG00000019322	EXOSC10	62	33.216	Macaca_mulatta
YOR001W	-	71	32.542	ENSMNEG00000035812	EXOSC10	65	32.542	Macaca_nemestrina
YOR001W	-	71	32.542	ENSMLEG00000025160	EXOSC10	65	32.542	Mandrillus_leucophaeus
YOR001W	-	68	35.495	ENSMAMG00000019375	exosc10	63	35.495	Mastacembelus_armatus
YOR001W	-	68	35.912	ENSMZEG00005013730	exosc10	60	35.912	Maylandia_zebra
YOR001W	-	68	33.393	ENSMGAG00000004665	EXOSC10	62	33.393	Meleagris_gallopavo
YOR001W	-	72	32.258	ENSMAUG00000019261	Exosc10	92	32.258	Mesocricetus_auratus
YOR001W	-	71	33.220	ENSMICG00000003858	EXOSC10	65	33.220	Microcebus_murinus
YOR001W	-	72	32.047	ENSMOCG00000016509	Exosc10	92	32.047	Microtus_ochrogaster
YOR001W	-	68	34.124	ENSMMOG00000009265	exosc10	63	34.124	Mola_mola
YOR001W	-	68	34.058	ENSMODG00000011194	EXOSC10	60	34.058	Monodelphis_domestica
YOR001W	-	68	33.578	ENSMALG00000021322	exosc10	60	33.578	Monopterus_albus
YOR001W	-	72	32.034	MGP_CAROLIEiJ_G0026802	Exosc10	92	32.034	Mus_caroli
YOR001W	-	72	32.203	ENSMUSG00000017264	Exosc10	92	32.203	Mus_musculus
YOR001W	-	72	31.879	MGP_PahariEiJ_G0029150	Exosc10	92	31.879	Mus_pahari
YOR001W	-	72	32.034	MGP_SPRETEiJ_G0027795	Exosc10	92	32.034	Mus_spretus
YOR001W	-	68	33.925	ENSMPUG00000016434	EXOSC10	59	33.925	Mustela_putorius_furo
YOR001W	-	68	33.925	ENSMLUG00000004276	EXOSC10	61	33.925	Myotis_lucifugus
YOR001W	-	71	33.105	ENSNGAG00000023829	Exosc10	65	33.105	Nannospalax_galili
YOR001W	-	68	35.714	ENSNBRG00000006256	exosc10	64	35.912	Neolamprologus_brichardi
YOR001W	-	71	32.646	ENSNLEG00000009539	EXOSC10	66	32.646	Nomascus_leucogenys
YOR001W	-	71	34.079	ENSOPRG00000012091	EXOSC10	64	34.079	Ochotona_princeps
YOR001W	-	71	33.503	ENSODEG00000013285	EXOSC10	65	33.503	Octodon_degus
YOR001W	-	68	35.219	ENSONIG00000002322	exosc10	68	35.543	Oreochromis_niloticus
YOR001W	-	71	32.941	ENSOANG00000013322	EXOSC10	64	32.941	Ornithorhynchus_anatinus
YOR001W	-	71	32.203	ENSOCUG00000013039	EXOSC10	63	32.203	Oryctolagus_cuniculus
YOR001W	-	68	33.880	ENSORLG00000005117	exosc10	59	34.062	Oryzias_latipes
YOR001W	-	68	34.334	ENSORLG00020013529	exosc10	72	34.334	Oryzias_latipes_hni
YOR001W	-	68	34.249	ENSORLG00015005525	exosc10	64	34.249	Oryzias_latipes_hsok
YOR001W	-	68	34.066	ENSOMEG00000003337	exosc10	62	34.066	Oryzias_melastigma
YOR001W	-	56	37.773	ENSOGAG00000013662	EXOSC10	50	37.773	Otolemur_garnettii
YOR001W	-	68	34.050	ENSOARG00000003668	EXOSC10	61	34.050	Ovis_aries
YOR001W	-	71	32.373	ENSPPAG00000038356	EXOSC10	65	32.373	Pan_paniscus
YOR001W	-	71	33.506	ENSPPRG00000022976	EXOSC10	66	33.506	Panthera_pardus
YOR001W	-	68	34.054	ENSPTIG00000012735	EXOSC10	65	34.054	Panthera_tigris_altaica
YOR001W	-	71	32.979	ENSPTRG00000000140	EXOSC10	64	32.979	Pan_troglodytes
YOR001W	-	71	32.705	ENSPANG00000026088	EXOSC10	65	32.705	Papio_anubis
YOR001W	-	68	33.515	ENSPKIG00000013098	exosc10	59	34.239	Paramormyrops_kingsleyae
YOR001W	-	68	32.305	ENSPSIG00000005078	EXOSC10	59	32.305	Pelodiscus_sinensis
YOR001W	-	52	41.133	ENSPMGG00000022241	exosc10	68	41.133	Periophthalmus_magnuspinnatus
YOR001W	-	71	32.483	ENSPEMG00000007753	Exosc10	78	32.483	Peromyscus_maniculatus_bairdii
YOR001W	-	69	34.336	ENSPCIG00000004840	EXOSC10	88	33.993	Phascolarctos_cinereus
YOR001W	-	68	36.298	ENSPFOG00000004744	exosc10	60	36.842	Poecilia_formosa
YOR001W	-	68	36.116	ENSPLAG00000010253	exosc10	62	36.594	Poecilia_latipinna
YOR001W	-	68	36.298	ENSPMEG00000005740	exosc10	62	36.842	Poecilia_mexicana
YOR001W	-	68	35.753	ENSPREG00000016285	exosc10	66	36.000	Poecilia_reticulata
YOR001W	-	71	33.276	ENSPPYG00000001891	EXOSC10	62	33.276	Pongo_abelii
YOR001W	-	54	37.986	ENSPCAG00000001583	EXOSC10	53	37.986	Procavia_capensis
YOR001W	-	71	33.390	ENSPCOG00000013742	EXOSC10	66	33.390	Propithecus_coquereli
YOR001W	-	68	34.234	ENSPVAG00000014780	EXOSC10	61	34.234	Pteropus_vampyrus
YOR001W	-	68	35.912	ENSPNYG00000007387	exosc10	63	35.714	Pundamilia_nyererei
YOR001W	-	68	33.574	ENSPNAG00000028864	exosc10	59	33.574	Pygocentrus_nattereri
YOR001W	-	71	32.696	ENSRNOG00000010719	Exosc10	63	32.696	Rattus_norvegicus
YOR001W	-	55	36.818	ENSRBIG00000039772	EXOSC10	52	36.818	Rhinopithecus_bieti
YOR001W	-	71	33.156	ENSRROG00000036700	EXOSC10	65	32.373	Rhinopithecus_roxellana
YOR001W	-	55	36.854	ENSSBOG00000020768	EXOSC10	54	36.854	Saimiri_boliviensis_boliviensis
YOR001W	-	68	33.214	ENSSHAG00000013572	EXOSC10	63	33.333	Sarcophilus_harrisii
YOR001W	-	55	41.822	ENSSFOG00015004512	exosc10	62	36.496	Scleropages_formosus
YOR001W	-	68	34.249	ENSSMAG00000017318	exosc10	63	34.249	Scophthalmus_maximus
YOR001W	-	68	35.165	ENSSDUG00000006646	exosc10	65	34.650	Seriola_dumerili
YOR001W	-	68	34.301	ENSSLDG00000025554	exosc10	65	34.296	Seriola_lalandi_dorsalis
YOR001W	-	62	34.113	ENSSARG00000013171	EXOSC10	67	34.113	Sorex_araneus
YOR001W	-	68	33.925	ENSSPUG00000006844	EXOSC10	89	33.925	Sphenodon_punctatus
YOR001W	-	68	36.661	ENSSPAG00000007053	exosc10	60	36.661	Stegastes_partitus
YOR001W	-	54	38.283	ENSSSCG00000003412	EXOSC10	52	38.283	Sus_scrofa
YOR001W	-	69	34.215	ENSTGUG00000002231	EXOSC10	65	34.215	Taeniopygia_guttata
YOR001W	-	68	35.273	ENSTRUG00000012484	exosc10	59	35.273	Takifugu_rubripes
YOR001W	-	68	35.766	ENSTNIG00000015181	exosc10	62	35.766	Tetraodon_nigroviridis
YOR001W	-	68	33.752	ENSTTRG00000001320	EXOSC10	60	33.752	Tursiops_truncatus
YOR001W	-	71	32.988	ENSUAMG00000014404	EXOSC10	67	32.988	Ursus_americanus
YOR001W	-	68	33.577	ENSUMAG00000023413	EXOSC10	80	33.519	Ursus_maritimus
YOR001W	-	68	34.414	ENSVPAG00000004629	EXOSC10	61	34.414	Vicugna_pacos
YOR001W	-	54	38.462	ENSVVUG00000027116	EXOSC10	52	38.462	Vulpes_vulpes
YOR001W	-	68	36.842	ENSXCOG00000004665	exosc10	64	36.594	Xiphophorus_couchianus
YOR001W	-	68	36.661	ENSXMAG00000011246	exosc10	66	37.205	Xiphophorus_maculatus