EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOR004W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 765
Position: chrXV:333592-334356
Accession: S000005530
RBP type: canonical RBP
Summary: Component of the small subunit processome%3B involved in 40S ribosomal subunit biogenesis%3B interacts with snR30 and is required for dissociation of snR30 from large pre-ribosomal particles%3B has homology to PINc domain protein Fcf1p%2C although the PINc domain of Utp23p is not required for function%3B essential protein

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR004W_mRNA	Fcf1	PF04900.12	2.4e-35	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR004W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOR004W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR004W	-	83	32.093	ENSG00000147679	UTP23	100	30.909	Homo_sapiens
YOR004W	-	81	30.952	ENSAMEG00000010317	UTP23	83	30.952	Ailuropoda_melanoleuca
YOR004W	-	81	32.075	ENSACIG00000013638	utp23	78	32.075	Amphilophus_citrinellus
YOR004W	-	61	31.210	ENSAOCG00000016307	utp23	82	30.332	Amphiprion_ocellaris
YOR004W	-	61	31.210	ENSAPEG00000018976	utp23	82	30.332	Amphiprion_percula
YOR004W	-	88	31.878	ENSATEG00000007509	utp23	89	31.878	Anabas_testudineus
YOR004W	-	81	30.622	ENSACAG00000011061	UTP23	81	30.622	Anolis_carolinensis
YOR004W	-	83	32.093	ENSANAG00000025273	-	83	31.100	Aotus_nancymaae
YOR004W	-	83	33.333	ENSANAG00000036252	-	80	32.381	Aotus_nancymaae
YOR004W	-	81	31.429	ENSAMXG00000020989	utp23	81	31.429	Astyanax_mexicanus
YOR004W	-	83	31.163	ENSBTAG00000040422	UTP23	83	30.144	Bos_taurus
YOR004W	-	89	30.435	WBGene00016411	C34E10.10	84	30.144	Caenorhabditis_elegans
YOR004W	-	83	32.093	ENSCJAG00000005903	UTP23	83	31.100	Callithrix_jacchus
YOR004W	-	81	31.429	ENSCAFG00000000821	UTP23	83	31.429	Canis_familiaris
YOR004W	-	81	31.429	ENSCAFG00020004174	UTP23	83	31.429	Canis_lupus_dingo
YOR004W	-	83	31.163	ENSCHIG00000019828	UTP23	83	30.952	Capra_hircus
YOR004W	-	83	32.558	ENSTSYG00000001644	UTP23	83	31.579	Carlito_syrichta
YOR004W	-	83	31.163	ENSCPOG00000034561	UTP23	76	30.144	Cavia_porcellus
YOR004W	-	81	31.100	ENSCCAG00000030228	UTP23	83	31.100	Cebus_capucinus
YOR004W	-	83	32.093	ENSCATG00000035129	UTP23	83	31.100	Cercocebus_atys
YOR004W	-	81	30.622	ENSCLAG00000005108	-	91	30.870	Chinchilla_lanigera
YOR004W	-	83	32.558	ENSCSAG00000010933	UTP23	83	31.579	Chlorocebus_sabaeus
YOR004W	-	81	32.536	ENSCHOG00000003145	UTP23	83	32.536	Choloepus_hoffmanni
YOR004W	-	83	33.803	ENSCPBG00000001634	UTP23	81	32.850	Chrysemys_picta_bellii
YOR004W	-	81	31.280	ENSCING00000012577	-	94	30.841	Ciona_intestinalis
YOR004W	-	81	30.332	ENSCSAVG00000003273	-	94	30.332	Ciona_savignyi
YOR004W	-	83	32.558	ENSCANG00000028461	UTP23	77	31.579	Colobus_angolensis_palliatus
YOR004W	-	83	31.797	ENSCSEG00000011409	utp23	81	30.952	Cynoglossus_semilaevis
YOR004W	-	87	31.416	ENSCVAG00000003180	utp23	86	31.416	Cyprinodon_variegatus
YOR004W	-	81	30.622	ENSDNOG00000033602	UTP23	82	30.622	Dasypus_novemcinctus
YOR004W	-	93	33.745	FBgn0031361	CG17652	83	32.093	Drosophila_melanogaster
YOR004W	-	83	31.481	ENSEEUG00000004503	UTP23	83	30.476	Erinaceus_europaeus
YOR004W	-	88	31.416	ENSELUG00000005602	utp23	90	31.416	Esox_lucius
YOR004W	-	91	31.330	ENSFCAG00000036051	UTP23	91	31.330	Felis_catus
YOR004W	-	81	30.476	ENSGAFG00000002063	utp23	79	30.476	Gambusia_affinis
YOR004W	-	88	31.602	ENSGACG00000002979	utp23	90	31.602	Gasterosteus_aculeatus
YOR004W	-	83	32.093	ENSGGOG00000013203	UTP23	83	31.100	Gorilla_gorilla
YOR004W	-	88	32.174	ENSHBUG00000023376	utp23	89	32.035	Haplochromis_burtoni
YOR004W	-	84	32.273	ENSIPUG00000014437	utp23	81	30.476	Ictalurus_punctatus
YOR004W	-	81	30.622	ENSSTOG00000001411	UTP23	83	30.622	Ictidomys_tridecemlineatus
YOR004W	-	91	30.085	ENSKMAG00000002262	utp23	88	31.878	Kryptolebias_marmoratus
YOR004W	-	99	33.074	ENSLACG00000014611	UTP23	82	32.057	Latimeria_chalumnae
YOR004W	-	81	31.100	ENSLAFG00000001282	UTP23	83	32.381	Loxodonta_africana
YOR004W	-	83	32.558	ENSMFAG00000003374	UTP23	83	31.579	Macaca_fascicularis
YOR004W	-	83	33.645	ENSMMUG00000020284	UTP23	81	32.692	Macaca_mulatta
YOR004W	-	83	32.558	ENSMNEG00000028668	UTP23	83	31.579	Macaca_nemestrina
YOR004W	-	83	32.558	ENSMLEG00000032668	UTP23	77	31.579	Mandrillus_leucophaeus
YOR004W	-	96	30.924	ENSMAMG00000003259	utp23	90	30.870	Mastacembelus_armatus
YOR004W	-	88	32.174	ENSMZEG00005026398	utp23	89	32.035	Maylandia_zebra
YOR004W	-	81	31.905	ENSMICG00000034720	UTP23	83	31.905	Microcebus_murinus
YOR004W	-	84	32.719	ENSMODG00000004140	UTP23	82	31.100	Monodelphis_domestica
YOR004W	-	93	31.276	ENSMALG00000010867	utp23	91	32.174	Monopterus_albus
YOR004W	-	71	30.055	ENSMUSG00000022313	Utp23	92	30.472	Mus_musculus
YOR004W	-	71	30.601	MGP_SPRETEiJ_G0020678	Utp23	89	30.901	Mus_spretus
YOR004W	-	85	31.364	ENSMPUG00000000987	UTP23	83	30.144	Mustela_putorius_furo
YOR004W	-	81	31.100	ENSMLUG00000004345	UTP23	83	31.100	Myotis_lucifugus
YOR004W	-	88	32.174	ENSNBRG00000012946	utp23	89	32.035	Neolamprologus_brichardi
YOR004W	-	83	31.163	ENSNLEG00000032995	UTP23	77	30.144	Nomascus_leucogenys
YOR004W	-	84	32.569	ENSMEUG00000001566	UTP23	88	31.100	Notamacropus_eugenii
YOR004W	-	96	30.242	ENSODEG00000018881	-	91	30.435	Octodon_degus
YOR004W	-	69	30.939	ENSONIG00000013525	utp23	88	33.149	Oreochromis_niloticus
YOR004W	-	66	36.257	ENSOANG00000004878	UTP23	54	36.567	Ornithorhynchus_anatinus
YOR004W	-	84	31.651	ENSOCUG00000007541	UTP23	83	30.144	Oryctolagus_cuniculus
YOR004W	-	98	30.588	ENSORLG00000001784	utp23	81	30.000	Oryzias_latipes
YOR004W	-	98	30.588	ENSORLG00020009731	utp23	81	30.000	Oryzias_latipes_hni
YOR004W	-	88	31.579	ENSOMEG00000008767	utp23	89	30.702	Oryzias_melastigma
YOR004W	-	50	33.333	ENSOGAG00000033060	-	70	32.323	Otolemur_garnettii
YOR004W	-	81	31.579	ENSOGAG00000017024	UTP23	83	31.579	Otolemur_garnettii
YOR004W	-	83	31.163	ENSOARG00000010483	UTP23	83	30.952	Ovis_aries
YOR004W	-	83	32.093	ENSPPAG00000028660	UTP23	83	31.100	Pan_paniscus
YOR004W	-	91	31.330	ENSPPRG00000024902	UTP23	91	31.330	Panthera_pardus
YOR004W	-	83	32.558	ENSPTIG00000019925	UTP23	83	31.579	Panthera_tigris_altaica
YOR004W	-	83	32.093	ENSPTRG00000020521	UTP23	77	31.100	Pan_troglodytes
YOR004W	-	83	32.558	ENSPANG00000011559	UTP23	83	31.579	Papio_anubis
YOR004W	-	83	31.455	ENSPSIG00000013132	UTP23	83	30.769	Pelodiscus_sinensis
YOR004W	-	85	30.909	ENSPMGG00000019770	utp23	87	30.909	Periophthalmus_magnuspinnatus
YOR004W	-	84	32.719	ENSPCIG00000018598	UTP23	80	31.100	Phascolarctos_cinereus
YOR004W	-	88	31.441	ENSPFOG00000003590	utp23	89	31.441	Poecilia_formosa
YOR004W	-	88	31.441	ENSPLAG00000017925	utp23	89	31.441	Poecilia_latipinna
YOR004W	-	88	31.441	ENSPMEG00000006728	utp23	89	31.441	Poecilia_mexicana
YOR004W	-	83	32.093	ENSPPYG00000018831	UTP23	83	31.100	Pongo_abelii
YOR004W	-	81	30.622	ENSPCAG00000009093	UTP23	83	30.622	Procavia_capensis
YOR004W	-	81	32.057	ENSPVAG00000002661	UTP23	83	32.057	Pteropus_vampyrus
YOR004W	-	88	32.174	ENSPNYG00000017636	utp23	89	32.035	Pundamilia_nyererei
YOR004W	-	79	31.707	ENSPNAG00000024538	utp23	86	33.810	Pygocentrus_nattereri
YOR004W	-	83	33.333	ENSRBIG00000026267	UTP23	83	32.381	Rhinopithecus_bieti
YOR004W	-	83	33.333	ENSRROG00000028593	UTP23	83	32.381	Rhinopithecus_roxellana
YOR004W	-	81	31.100	ENSSBOG00000018914	UTP23	83	31.100	Saimiri_boliviensis_boliviensis
YOR004W	-	54	37.857	ENSSHAG00000015399	UTP23	66	35.606	Sarcophilus_harrisii
YOR004W	-	93	30.290	ENSSDUG00000020272	utp23	94	30.568	Seriola_dumerili
YOR004W	-	95	31.707	ENSSLDG00000000393	utp23	93	30.263	Seriola_lalandi_dorsalis
YOR004W	-	83	32.093	ENSSPUG00000011572	UTP23	83	30.952	Sphenodon_punctatus
YOR004W	-	83	31.628	ENSSSCG00000030493	UTP23	82	30.952	Sus_scrofa
YOR004W	-	81	31.776	ENSTGUG00000015403	-	86	31.776	Taeniopygia_guttata
YOR004W	-	83	32.093	ENSTTRG00000015295	UTP23	83	31.100	Tursiops_truncatus
YOR004W	-	83	31.163	ENSVPAG00000009358	UTP23	83	30.144	Vicugna_pacos
YOR004W	-	81	31.429	ENSVVUG00000015307	UTP23	83	31.429	Vulpes_vulpes
YOR004W	-	81	30.144	ENSXETG00000020781	utp23	82	31.579	Xenopus_tropicalis
YOR004W	-	81	30.000	ENSXCOG00000019504	utp23	81	30.000	Xiphophorus_couchianus
YOR004W	-	81	30.000	ENSXMAG00000014058	utp23	81	30.000	Xiphophorus_maculatus