EuRBPDB

Description

Ensembl ID: YOR046C (Gene tree)
Gene ID: -
Gene Symbol: DBP5
Alias: RAT8
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1449
Position: chrXV:414459-415907
Accession: S000005572
RBP type: canonical RBP
Summary: Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family%3B involved in mRNA export from the nucleus%2C remodeling messenger ribonucleoprotein particles (mRNPs)%2C with ATPase activity stimulated by Gle1p%2C IP6 and Nup159p%3B involved in translation termination along with Sup45p (eRF1)%3B role in the cellular response to heat stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR046C_mRNA	DEAD	PF00270.29	7.2e-37	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YOR046C	DBP5	71	30.812	YGL078C	-	66	30.812
YOR046C	DBP5	79	37.047	YDR021W	-	94	37.047
YOR046C	DBP5	83	37.811	YKR059W	TIF1	98	37.811
YOR046C	DBP5	78	33.005	YPL119C	DBP1	60	33.418
YOR046C	DBP5	73	34.807	YHR065C	-	69	34.807
YOR046C	DBP5	78	35.248	YDL160C	-	72	35.248
YOR046C	DBP5	74	33.770	YHR169W	-	84	33.770
YOR046C	DBP5	73	30.978	YNL112W	-	65	30.978
YOR046C	DBP5	73	32.000	YOR204W	DED1	60	32.000
YOR046C	DBP5	72	30.809	YFL002C	-	61	30.809
YOR046C	DBP5	83	37.811	YJL138C	TIF2	98	37.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR046C	DBP5	83	42.721	WBGene00011580	ddx-19	84	42.721	Caenorhabditis_elegans
YOR046C	DBP5	83	47.277	FBgn0024804	Dbp80	88	47.277	Drosophila_melanogaster