EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOR048C (Gene tree)
Gene ID: -
Gene Symbol: RAT1
Alias: HKE1|TAP1|XRN2
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3021
Position: chrXV:418630-421650
Accession: S000005574
RBP type: canonical RBP
Summary: Nuclear 5' to 3' single-stranded RNA exonuclease%3B involved in RNA metabolism%2C including rRNA and snoRNA processing%2C as well as poly (A+) dependent and independent mRNA transcription termination%3B required for cotranscriptional pre-rRNA cleavage%3B displaces Cdk1p from elongating transcripts%2C especially as RNAPII reaches the poly(A) site%2C negatively regulates phosphorylation of the CTD of RNAPII%2C and inhibits RNAPII transcriptional elongation

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR048C_mRNA	XRN_N	PF03159.18	3e-99	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR048C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOR048C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR048C	RAT1	63	53.846	ENSG00000088930	XRN2	77	48.069	Homo_sapiens
YOR048C	RAT1	63	54.348	ENSAPOG00000009818	xrn2	65	51.634	Acanthochromis_polyacanthus
YOR048C	RAT1	63	53.846	ENSAMEG00000012581	XRN2	77	48.069	Ailuropoda_melanoleuca
YOR048C	RAT1	64	52.068	ENSACIG00000015047	xrn2	81	49.781	Amphilophus_citrinellus
YOR048C	RAT1	63	54.106	ENSAOCG00000023632	xrn2	65	51.416	Amphiprion_ocellaris
YOR048C	RAT1	63	54.106	ENSAPEG00000014871	xrn2	65	51.416	Amphiprion_percula
YOR048C	RAT1	63	54.458	ENSATEG00000001273	xrn2	69	52.284	Anabas_testudineus
YOR048C	RAT1	64	53.093	ENSAPLG00000013869	XRN2	68	51.079	Anas_platyrhynchos
YOR048C	RAT1	70	51.932	ENSACAG00000005565	XRN2	81	50.340	Anolis_carolinensis
YOR048C	RAT1	63	53.606	ENSANAG00000020126	XRN2	72	59.355	Aotus_nancymaae
YOR048C	RAT1	59	52.657	ENSACLG00000010522	xrn2	96	58.824	Astatotilapia_calliptera
YOR048C	RAT1	65	53.623	ENSAMXG00000018301	xrn2	68	51.693	Astyanax_mexicanus
YOR048C	RAT1	79	53.365	ENSBTAG00000011304	XRN2	76	55.291	Bos_taurus
YOR048C	RAT1	84	39.257	WBGene00006964	xrn-2	80	39.605	Caenorhabditis_elegans
YOR048C	RAT1	63	53.606	ENSCJAG00000005611	XRN2	77	48.069	Callithrix_jacchus
YOR048C	RAT1	63	53.846	ENSCAFG00000005185	XRN2	69	52.283	Canis_familiaris
YOR048C	RAT1	63	53.846	ENSCAFG00020027479	XRN2	69	52.283	Canis_lupus_dingo
YOR048C	RAT1	79	53.125	ENSCHIG00000006921	XRN2	79	51.598	Capra_hircus
YOR048C	RAT1	63	53.846	ENSTSYG00000008315	XRN2	69	52.283	Carlito_syrichta
YOR048C	RAT1	60	47.989	ENSCAPG00000010773	XRN2	69	46.535	Cavia_aperea
YOR048C	RAT1	63	53.846	ENSCPOG00000009407	XRN2	69	52.283	Cavia_porcellus
YOR048C	RAT1	63	53.846	ENSCATG00000040350	XRN2	78	48.069	Cercocebus_atys
YOR048C	RAT1	63	53.846	ENSCLAG00000013419	XRN2	69	52.283	Chinchilla_lanigera
YOR048C	RAT1	63	53.846	ENSCSAG00000011094	XRN2	77	48.069	Chlorocebus_sabaeus
YOR048C	RAT1	57	54.444	ENSCPBG00000023533	XRN2	64	54.444	Chrysemys_picta_bellii
YOR048C	RAT1	59	53.333	ENSCING00000022336	-	82	52.432	Ciona_intestinalis
YOR048C	RAT1	85	45.073	ENSCSAVG00000011217	-	96	45.208	Ciona_savignyi
YOR048C	RAT1	63	53.846	ENSCANG00000040240	XRN2	77	48.069	Colobus_angolensis_palliatus
YOR048C	RAT1	63	53.606	ENSCGRG00001010676	Xrn2	70	52.055	Cricetulus_griseus_chok1gshd
YOR048C	RAT1	60	52.430	ENSCGRG00000006378	Xrn2	67	50.847	Cricetulus_griseus_crigri
YOR048C	RAT1	64	53.753	ENSCVAG00000018999	xrn2	82	51.092	Cyprinodon_variegatus
YOR048C	RAT1	64	53.382	ENSDARG00000101900	xrn2	80	51.247	Danio_rerio
YOR048C	RAT1	63	53.606	ENSDNOG00000001895	XRN2	74	52.055	Dasypus_novemcinctus
YOR048C	RAT1	62	53.846	ENSDORG00000005434	Xrn2	75	53.608	Dipodomys_ordii
YOR048C	RAT1	67	48.747	FBgn0031868	Rat1	75	48.747	Drosophila_melanogaster
YOR048C	RAT1	63	52.174	ENSETEG00000001740	XRN2	63	52.174	Echinops_telfairi
YOR048C	RAT1	65	51.748	ENSEBUG00000016136	xrn2	81	50.864	Eptatretus_burgeri
YOR048C	RAT1	63	53.846	ENSEASG00005002484	XRN2	77	48.069	Equus_asinus_asinus
YOR048C	RAT1	63	53.846	ENSECAG00000018988	XRN2	75	48.069	Equus_caballus
YOR048C	RAT1	61	53.641	ENSELUG00000000552	xrn2	65	52.577	Esox_lucius
YOR048C	RAT1	63	53.846	ENSFCAG00000007970	XRN2	66	55.820	Felis_catus
YOR048C	RAT1	63	54.126	ENSFALG00000004508	XRN2	63	53.889	Ficedula_albicollis
YOR048C	RAT1	63	53.846	ENSFDAG00000016311	XRN2	69	52.283	Fukomys_damarensis
YOR048C	RAT1	62	53.753	ENSGMOG00000013436	xrn2	83	51.685	Gadus_morhua
YOR048C	RAT1	61	54.126	ENSGALG00000008372	XRN2	69	52.154	Gallus_gallus
YOR048C	RAT1	63	53.511	ENSGAFG00000014284	xrn2	94	48.706	Gambusia_affinis
YOR048C	RAT1	63	53.753	ENSGACG00000011870	xrn2	81	51.685	Gasterosteus_aculeatus
YOR048C	RAT1	57	55.000	ENSGAGG00000004884	XRN2	64	55.000	Gopherus_agassizii
YOR048C	RAT1	63	53.846	ENSGGOG00000013738	XRN2	77	48.069	Gorilla_gorilla
YOR048C	RAT1	64	53.162	ENSHGLG00000014831	XRN2	69	53.162	Heterocephalus_glaber_female
YOR048C	RAT1	64	53.162	ENSHGLG00100013130	XRN2	69	53.162	Heterocephalus_glaber_male
YOR048C	RAT1	64	52.436	ENSHCOG00000011994	xrn2	73	50.463	Hippocampus_comes
YOR048C	RAT1	64	53.269	ENSIPUG00000006639	xrn2	65	53.299	Ictalurus_punctatus
YOR048C	RAT1	63	54.087	ENSSTOG00000000589	XRN2	77	48.069	Ictidomys_tridecemlineatus
YOR048C	RAT1	63	53.237	ENSJJAG00000022128	Xrn2	72	56.111	Jaculus_jaculus
YOR048C	RAT1	55	53.889	ENSLACG00000008307	XRN2	72	53.889	Latimeria_chalumnae
YOR048C	RAT1	63	54.067	ENSLOCG00000016874	xrn2	71	52.222	Lepisosteus_oculatus
YOR048C	RAT1	63	53.477	ENSLAFG00000014624	XRN2	69	51.936	Loxodonta_africana
YOR048C	RAT1	63	53.846	ENSMFAG00000038122	XRN2	77	48.069	Macaca_fascicularis
YOR048C	RAT1	63	53.846	ENSMMUG00000011405	XRN2	77	48.069	Macaca_mulatta
YOR048C	RAT1	63	53.846	ENSMNEG00000040626	XRN2	77	48.069	Macaca_nemestrina
YOR048C	RAT1	63	53.846	ENSMLEG00000041897	XRN2	77	48.069	Mandrillus_leucophaeus
YOR048C	RAT1	63	53.140	ENSMAMG00000008633	xrn2	71	50.545	Mastacembelus_armatus
YOR048C	RAT1	59	54.348	ENSMZEG00005022362	xrn2	80	50.109	Maylandia_zebra
YOR048C	RAT1	61	53.365	ENSMGAG00000003196	XRN2	69	51.461	Meleagris_gallopavo
YOR048C	RAT1	66	54.087	ENSMAUG00000021842	Xrn2	68	52.511	Mesocricetus_auratus
YOR048C	RAT1	65	53.606	ENSMICG00000008126	XRN2	80	44.882	Microcebus_murinus
YOR048C	RAT1	63	54.087	ENSMOCG00000012588	Xrn2	64	55.556	Microtus_ochrogaster
YOR048C	RAT1	63	53.623	ENSMMOG00000017576	xrn2	78	51.651	Mola_mola
YOR048C	RAT1	57	54.444	ENSMODG00000006163	XRN2	64	54.444	Monodelphis_domestica
YOR048C	RAT1	64	53.382	ENSMALG00000011355	xrn2	80	50.763	Monopterus_albus
YOR048C	RAT1	63	53.846	MGP_CAROLIEiJ_G0024400	Xrn2	64	56.111	Mus_caroli
YOR048C	RAT1	63	53.846	ENSMUSG00000027433	Xrn2	64	56.111	Mus_musculus
YOR048C	RAT1	63	53.606	MGP_PahariEiJ_G0025843	Xrn2	64	56.111	Mus_pahari
YOR048C	RAT1	63	53.846	MGP_SPRETEiJ_G0025318	Xrn2	75	56.557	Mus_spretus
YOR048C	RAT1	63	53.846	ENSMPUG00000001198	XRN2	72	44.583	Mustela_putorius_furo
YOR048C	RAT1	63	53.846	ENSMLUG00000001536	XRN2	69	52.283	Myotis_lucifugus
YOR048C	RAT1	63	53.846	ENSNGAG00000018138	Xrn2	64	56.111	Nannospalax_galili
YOR048C	RAT1	59	54.106	ENSNBRG00000008062	xrn2	96	58.824	Neolamprologus_brichardi
YOR048C	RAT1	63	53.846	ENSNLEG00000009991	XRN2	77	48.069	Nomascus_leucogenys
YOR048C	RAT1	63	53.606	ENSODEG00000010745	-	69	52.055	Octodon_degus
YOR048C	RAT1	61	48.593	ENSODEG00000000860	-	65	50.256	Octodon_degus
YOR048C	RAT1	78	53.623	ENSONIG00000018720	xrn2	90	51.670	Oreochromis_niloticus
YOR048C	RAT1	72	53.477	ENSOANG00000015673	XRN2	89	44.858	Ornithorhynchus_anatinus
YOR048C	RAT1	63	53.846	ENSOCUG00000013468	XRN2	77	47.639	Oryctolagus_cuniculus
YOR048C	RAT1	80	53.623	ENSORLG00000017213	xrn2	99	38.563	Oryzias_latipes
YOR048C	RAT1	80	53.623	ENSORLG00020001824	xrn2	99	38.563	Oryzias_latipes_hni
YOR048C	RAT1	80	53.382	ENSORLG00015019747	xrn2	89	52.546	Oryzias_latipes_hsok
YOR048C	RAT1	79	53.623	ENSOMEG00000019820	xrn2	90	51.198	Oryzias_melastigma
YOR048C	RAT1	63	53.606	ENSOGAG00000001068	XRN2	69	52.055	Otolemur_garnettii
YOR048C	RAT1	77	51.918	ENSOARG00000004443	XRN2	81	50.363	Ovis_aries
YOR048C	RAT1	63	53.846	ENSPPAG00000033549	XRN2	77	48.069	Pan_paniscus
YOR048C	RAT1	63	53.846	ENSPPRG00000008732	XRN2	69	52.283	Panthera_pardus
YOR048C	RAT1	60	52.685	ENSPTIG00000015683	XRN2	67	51.090	Panthera_tigris_altaica
YOR048C	RAT1	63	53.846	ENSPTRG00000013308	XRN2	77	48.069	Pan_troglodytes
YOR048C	RAT1	63	53.846	ENSPANG00000018088	XRN2	77	48.069	Papio_anubis
YOR048C	RAT1	63	53.382	ENSPKIG00000016889	xrn2	67	52.546	Paramormyrops_kingsleyae
YOR048C	RAT1	54	53.315	ENSPSIG00000014666	XRN2	73	53.261	Pelodiscus_sinensis
YOR048C	RAT1	63	54.087	ENSPEMG00000000111	Xrn2	64	55.000	Peromyscus_maniculatus_bairdii
YOR048C	RAT1	82	53.883	ENSPFOG00000004182	xrn2	71	50.106	Poecilia_formosa
YOR048C	RAT1	63	53.883	ENSPLAG00000007351	xrn2	77	50.106	Poecilia_latipinna
YOR048C	RAT1	75	53.073	ENSPMEG00000011798	xrn2	66	50.761	Poecilia_mexicana
YOR048C	RAT1	78	54.126	ENSPREG00000012452	xrn2	77	50.638	Poecilia_reticulata
YOR048C	RAT1	63	53.846	ENSPPYG00000010755	XRN2	77	48.069	Pongo_abelii
YOR048C	RAT1	63	54.348	ENSPCAG00000011191	XRN2	69	52.752	Procavia_capensis
YOR048C	RAT1	62	48.889	ENSPCOG00000016468	XRN2	74	53.608	Propithecus_coquereli
YOR048C	RAT1	51	46.377	ENSPVAG00000004596	XRN2	57	45.183	Pteropus_vampyrus
YOR048C	RAT1	59	52.415	ENSPNYG00000001765	xrn2	80	48.366	Pundamilia_nyererei
YOR048C	RAT1	63	53.865	ENSPNAG00000010956	xrn2	64	52.632	Pygocentrus_nattereri
YOR048C	RAT1	63	53.846	ENSRNOG00000011785	Xrn2	64	56.111	Rattus_norvegicus
YOR048C	RAT1	63	53.846	ENSRBIG00000036193	XRN2	80	52.283	Rhinopithecus_bieti
YOR048C	RAT1	63	53.846	ENSRROG00000044400	XRN2	70	48.069	Rhinopithecus_roxellana
YOR048C	RAT1	63	53.606	ENSSBOG00000021014	XRN2	77	48.069	Saimiri_boliviensis_boliviensis
YOR048C	RAT1	63	53.623	ENSSFOG00015001091	xrn2	70	51.778	Scleropages_formosus
YOR048C	RAT1	62	54.237	ENSSMAG00000007834	xrn2	68	50.990	Scophthalmus_maximus
YOR048C	RAT1	66	53.125	ENSSDUG00000012802	xrn2	81	50.542	Seriola_dumerili
YOR048C	RAT1	63	53.735	ENSSLDG00000021273	xrn2	77	51.087	Seriola_lalandi_dorsalis
YOR048C	RAT1	58	54.237	ENSSPUG00000005485	XRN2	66	51.786	Sphenodon_punctatus
YOR048C	RAT1	63	53.382	ENSSPAG00000016027	xrn2	77	47.750	Stegastes_partitus
YOR048C	RAT1	63	53.606	ENSSSCG00000007109	XRN2	69	52.055	Sus_scrofa
YOR048C	RAT1	66	52.174	ENSTGUG00000007535	XRN2	68	50.926	Taeniopygia_guttata
YOR048C	RAT1	66	52.899	ENSTRUG00000015489	xrn2	72	49.309	Takifugu_rubripes
YOR048C	RAT1	64	53.865	ENSTNIG00000010712	xrn2	72	52.125	Tetraodon_nigroviridis
YOR048C	RAT1	62	53.883	ENSTBEG00000004119	XRN2	69	52.558	Tupaia_belangeri
YOR048C	RAT1	68	53.365	ENSTTRG00000009087	XRN2	78	51.826	Tursiops_truncatus
YOR048C	RAT1	68	53.589	ENSUAMG00000024634	XRN2	74	53.608	Ursus_americanus
YOR048C	RAT1	61	52.393	ENSUMAG00000004012	XRN2	62	54.318	Ursus_maritimus
YOR048C	RAT1	52	50.804	ENSVPAG00000010694	XRN2	59	49.846	Vicugna_pacos
YOR048C	RAT1	63	53.846	ENSVVUG00000012178	XRN2	69	52.283	Vulpes_vulpes
YOR048C	RAT1	75	53.511	ENSXETG00000023501	xrn2	73	51.570	Xenopus_tropicalis
YOR048C	RAT1	63	53.511	ENSXMAG00000000242	xrn2	94	49.412	Xiphophorus_maculatus