EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOR056C (Gene tree)
Gene ID: -
Gene Symbol: NOB1
Alias: YOR29-07
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1380
Position: chrXV:430247-431626
Accession: S000005582
RBP type: canonical RBP
Summary: Protein involved in proteasomal and 40S ribosomal subunit biogenesis%3B required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA%3B cleavage is activated by Fun12p%2C a GTPase and translation initiation factor%3B relocalizes from nucleus to nucleolus upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR056C_mRNA	NOB1_Zn_bind	PF08772.11	3.5e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR056C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOR056C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR056C	NOB1	56	34.234	ENSAOCG00000006533	nob1	64	34.234	Amphiprion_ocellaris
YOR056C	NOB1	56	34.234	ENSAPEG00000000029	nob1	64	34.234	Amphiprion_percula
YOR056C	NOB1	56	34.234	ENSAPEG00000000032	-	64	34.234	Amphiprion_percula
YOR056C	NOB1	65	36.667	ENSATEG00000014585	nob1	58	33.178	Anabas_testudineus
YOR056C	NOB1	69	36.607	ENSACLG00000024897	nob1	64	36.607	Astatotilapia_calliptera
YOR056C	NOB1	50	30.342	ENSCLAG00000005926	NOB1	58	30.579	Chinchilla_lanigera
YOR056C	NOB1	72	33.333	ENSCGRG00001009255	Nob1	71	32.381	Cricetulus_griseus_chok1gshd
YOR056C	NOB1	70	35.556	ENSCGRG00000010869	Nob1	76	32.432	Cricetulus_griseus_crigri
YOR056C	NOB1	74	30.081	ENSCSEG00000019657	nob1	53	38.889	Cynoglossus_semilaevis
YOR056C	NOB1	70	39.362	ENSEBUG00000004464	nob1	75	39.362	Eptatretus_burgeri
YOR056C	NOB1	69	32.353	ENSECAG00000023748	NOB1	61	32.353	Equus_caballus
YOR056C	NOB1	66	38.889	ENSELUG00000016199	nob1	65	34.862	Esox_lucius
YOR056C	NOB1	53	36.735	ENSGAFG00000006104	nob1	64	35.052	Gambusia_affinis
YOR056C	NOB1	56	36.036	ENSKMAG00000018220	nob1	57	35.484	Kryptolebias_marmoratus
YOR056C	NOB1	64	38.889	ENSLBEG00000026375	nob1	60	34.862	Labrus_bergylta
YOR056C	NOB1	50	30.544	ENSMGAG00000008675	NOB1	86	30.389	Meleagris_gallopavo
YOR056C	NOB1	58	34.483	ENSMAUG00000013554	Nob1	75	33.333	Mesocricetus_auratus
YOR056C	NOB1	66	35.556	ENSMOCG00000010370	Nob1	80	32.432	Microtus_ochrogaster
YOR056C	NOB1	69	34.862	ENSMALG00000014580	nob1	76	34.862	Monopterus_albus
YOR056C	NOB1	67	36.559	ENSMUSG00000003848	Nob1	73	33.333	Mus_musculus
YOR056C	NOB1	52	35.556	ENSNGAG00000008627	Nob1	78	32.432	Nannospalax_galili
YOR056C	NOB1	69	32.110	ENSORLG00000018862	nob1	67	32.110	Oryzias_latipes
YOR056C	NOB1	69	32.110	ENSORLG00020014687	nob1	69	32.110	Oryzias_latipes_hni
YOR056C	NOB1	69	32.110	ENSORLG00015012156	nob1	67	32.110	Oryzias_latipes_hsok
YOR056C	NOB1	68	32.110	ENSOMEG00000022722	nob1	65	32.110	Oryzias_melastigma
YOR056C	NOB1	50	31.197	ENSPCIG00000007274	-	78	31.818	Phascolarctos_cinereus
YOR056C	NOB1	56	36.054	ENSPMEG00000023435	nob1	55	34.054	Poecilia_mexicana
YOR056C	NOB1	92	30.000	ENSPNYG00000018449	nob1	64	36.607	Pundamilia_nyererei
YOR056C	NOB1	89	30.536	ENSSFOG00015008503	nob1	95	30.193	Scleropages_formosus
YOR056C	NOB1	65	37.778	ENSSDUG00000007307	nob1	58	33.945	Seriola_dumerili
YOR056C	NOB1	51	39.286	ENSSLDG00000011459	-	71	38.824	Seriola_lalandi_dorsalis
YOR056C	NOB1	56	34.234	ENSSPAG00000022362	nob1	56	34.234	Stegastes_partitus