EuRBPDB

Description

Ensembl ID: YOR089C (Gene tree)
Gene ID: -
Gene Symbol: VPS21
Alias: VPS12|VPT12|YPT21|YPT51
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 633
Position: chrXV:490196-490828
Accession: S000005615
RBP type: canonical RBP
Summary: Endosomal Rab family GTPase%3B required for endocytic transport and sorting of vacuolar hydrolases%3B required for endosomal localization of the CORVET complex%3B required with YPT52 for MVB biogenesis and sorting%3B involved in autophagy and ionic stress tolerance%3B geranylgeranylation required for membrane association%3B protein abundance increases in response to DNA replication stress%3B mammalian Rab5 homolog%3B VPS21 has a paralog%2C YPT53%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR089C_mRNA	MMR_HSR1	PF01926.23	6.4e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YOR089C	VPS21	75	39.490	YGL210W	-	69	39.490
YOR089C	VPS21	75	31.138	YCR027C	RHB1	79	31.138
YOR089C	VPS21	96	48.035	YKR014C	-	98	48.035
YOR089C	VPS21	99	38.073	YLR262C	-	97	38.073
YOR089C	VPS21	97	56.938	YNL093W	-	95	56.938
YOR089C	VPS21	82	40.698	YER031C	YPT31	76	40.698
YOR089C	VPS21	78	41.463	YFL005W	SEC4	91	37.129
YOR089C	VPS21	97	36.279	YBR264C	-	98	36.279
YOR089C	VPS21	97	34.928	YML001W	YPT7	96	34.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR089C	VPS21	96	41.584	ENSAPOG00000011363	-	86	41.584	Acanthochromis_polyacanthus
YOR089C	VPS21	78	50.307	ENSEBUG00000015845	-	73	50.307	Eptatretus_burgeri
YOR089C	VPS21	80	47.305	ENSEBUG00000012680	-	68	47.305	Eptatretus_burgeri
YOR089C	VPS21	75	48.101	ENSPMGG00000019723	-	77	48.101	Periophthalmus_magnuspinnatus
YOR089C	VPS21	78	42.683	ENSPMAG00000001403	-	80	42.683	Petromyzon_marinus
YOR089C	VPS21	79	41.566	ENSTNIG00000017844	-	87	41.566	Tetraodon_nigroviridis