EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YOR119C (Gene tree)
Gene ID: -
Gene Symbol: RIO1
Alias: RRP10
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1455
Position: chrXV:548792-550246
Accession: S000005645
RBP type: canonical RBP
Summary: Serine kinase involved in cell cycle regulation and rDNA integrity%3B associated with late pre-40S particles via its conserved C-terminal domain and participates in late 40S biogenesis%3B association with pre-40S particles regulated by its catalytic ATPase site and likely occurs after the release of Rio2p from these particles%3B involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA%3B phosphorylates Rpa43p in anaphase to remove Pol I from rDNA

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR119C_mRNA	RIO1	PF01163.22	4.9e-75	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR119C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YOR119C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR119C	RIO1	96	38.160	ENSG00000124784	RIOK1	59	41.304	Homo_sapiens
YOR119C	RIO1	67	32.000	ENSAPOG00000015632	riok1	64	35.784	Acanthochromis_polyacanthus
YOR119C	RIO1	96	38.353	ENSAMEG00000017367	RIOK1	59	41.848	Ailuropoda_melanoleuca
YOR119C	RIO1	97	37.449	ENSACIG00000003735	riok1	63	39.674	Amphilophus_citrinellus
YOR119C	RIO1	96	37.681	ENSAOCG00000011818	riok1	63	41.160	Amphiprion_ocellaris
YOR119C	RIO1	96	37.681	ENSAPEG00000001345	riok1	63	41.160	Amphiprion_percula
YOR119C	RIO1	96	36.756	ENSATEG00000006594	riok1	80	40.710	Anabas_testudineus
YOR119C	RIO1	96	37.800	ENSAPLG00000004196	RIOK1	71	41.576	Anas_platyrhynchos
YOR119C	RIO1	97	36.944	ENSACAG00000000695	RIOK1	60	40.489	Anolis_carolinensis
YOR119C	RIO1	96	36.570	ENSACLG00000015799	riok1	63	39.779	Astatotilapia_calliptera
YOR119C	RIO1	96	37.074	ENSAMXG00000015286	riok1	58	40.921	Astyanax_mexicanus
YOR119C	RIO1	96	38.323	ENSBTAG00000013821	RIOK1	59	42.120	Bos_taurus
YOR119C	RIO1	96	38.507	ENSCJAG00000042960	RIOK1	59	41.576	Callithrix_jacchus
YOR119C	RIO1	96	37.725	ENSCAFG00000009563	RIOK1	59	41.304	Canis_familiaris
YOR119C	RIO1	86	37.472	ENSCAFG00020013233	RIOK1	60	41.304	Canis_lupus_dingo
YOR119C	RIO1	96	37.725	ENSCHIG00000001534	RIOK1	59	41.304	Capra_hircus
YOR119C	RIO1	82	37.438	ENSTSYG00000011368	RIOK1	67	40.210	Carlito_syrichta
YOR119C	RIO1	93	37.888	ENSCAPG00000008489	RIOK1	72	41.033	Cavia_aperea
YOR119C	RIO1	93	37.681	ENSCPOG00000009882	RIOK1	59	40.761	Cavia_porcellus
YOR119C	RIO1	96	38.878	ENSCCAG00000024061	RIOK1	59	41.576	Cebus_capucinus
YOR119C	RIO1	96	38.776	ENSCATG00000001548	RIOK1	65	41.576	Cercocebus_atys
YOR119C	RIO1	96	38.294	ENSCLAG00000003522	RIOK1	59	41.576	Chinchilla_lanigera
YOR119C	RIO1	71	41.304	ENSCSAG00000007396	RIOK1	62	41.304	Chlorocebus_sabaeus
YOR119C	RIO1	71	40.650	ENSCPBG00000008685	RIOK1	58	40.761	Chrysemys_picta_bellii
YOR119C	RIO1	96	38.571	ENSCANG00000032919	RIOK1	60	41.954	Colobus_angolensis_palliatus
YOR119C	RIO1	91	39.648	ENSCGRG00001018868	Riok1	52	42.988	Cricetulus_griseus_chok1gshd
YOR119C	RIO1	91	39.648	ENSCGRG00000008015	Riok1	52	42.988	Cricetulus_griseus_crigri
YOR119C	RIO1	67	30.149	ENSCVAG00000011291	riok1	64	33.654	Cyprinodon_variegatus
YOR119C	RIO1	96	36.895	ENSDARG00000016399	riok1	64	39.276	Danio_rerio
YOR119C	RIO1	96	37.838	ENSDNOG00000015813	RIOK1	56	41.408	Dasypus_novemcinctus
YOR119C	RIO1	96	39.400	ENSDORG00000008530	Riok1	59	42.120	Dipodomys_ordii
YOR119C	RIO1	94	38.384	ENSETEG00000020273	RIOK1	60	41.033	Echinops_telfairi
YOR119C	RIO1	91	37.333	ENSEBUG00000013672	riok1	56	40.462	Eptatretus_burgeri
YOR119C	RIO1	71	41.848	ENSEASG00005012032	RIOK1	59	41.848	Equus_asinus_asinus
YOR119C	RIO1	96	37.917	ENSECAG00000009007	RIOK1	59	41.848	Equus_caballus
YOR119C	RIO1	64	40.000	ENSEEUG00000007123	RIOK1	65	40.000	Erinaceus_europaeus
YOR119C	RIO1	72	39.410	ENSELUG00000017029	riok1	62	39.410	Esox_lucius
YOR119C	RIO1	96	36.864	ENSFCAG00000027290	RIOK1	59	41.033	Felis_catus
YOR119C	RIO1	95	38.333	ENSFALG00000013244	RIOK1	59	41.667	Ficedula_albicollis
YOR119C	RIO1	96	37.849	ENSFDAG00000019139	RIOK1	59	41.144	Fukomys_damarensis
YOR119C	RIO1	72	39.402	ENSFHEG00000021419	riok1	76	39.510	Fundulus_heteroclitus
YOR119C	RIO1	68	38.701	ENSGMOG00000018668	riok1	82	38.462	Gadus_morhua
YOR119C	RIO1	67	34.030	ENSGALG00000012795	RIOK1	67	35.841	Gallus_gallus
YOR119C	RIO1	60	43.464	ENSGAFG00000004091	riok1	54	43.464	Gambusia_affinis
YOR119C	RIO1	71	39.503	ENSGACG00000002496	riok1	67	39.503	Gasterosteus_aculeatus
YOR119C	RIO1	70	41.644	ENSGAGG00000002262	RIOK1	71	41.304	Gopherus_agassizii
YOR119C	RIO1	96	37.888	ENSGGOG00000011037	RIOK1	56	45.246	Gorilla_gorilla
YOR119C	RIO1	96	36.680	ENSHGLG00000008699	RIOK1	57	40.282	Heterocephalus_glaber_female
YOR119C	RIO1	96	36.680	ENSHGLG00100008188	RIOK1	57	40.282	Heterocephalus_glaber_male
YOR119C	RIO1	95	38.809	ENSHCOG00000013275	riok1	63	40.503	Hippocampus_comes
YOR119C	RIO1	96	36.546	ENSIPUG00000003290	riok1	60	40.108	Ictalurus_punctatus
YOR119C	RIO1	96	37.860	ENSSTOG00000009289	RIOK1	59	41.551	Ictidomys_tridecemlineatus
YOR119C	RIO1	96	38.431	ENSJJAG00000015152	Riok1	59	41.304	Jaculus_jaculus
YOR119C	RIO1	66	41.590	ENSKMAG00000019378	riok1	77	41.590	Kryptolebias_marmoratus
YOR119C	RIO1	71	39.779	ENSLBEG00000016650	riok1	63	40.052	Labrus_bergylta
YOR119C	RIO1	88	35.477	ENSLACG00000000300	RIOK1	51	37.855	Latimeria_chalumnae
YOR119C	RIO1	95	37.577	ENSLOCG00000011728	riok1	63	39.314	Lepisosteus_oculatus
YOR119C	RIO1	96	37.822	ENSLAFG00000005504	RIOK1	61	41.033	Loxodonta_africana
YOR119C	RIO1	96	38.776	ENSMFAG00000029990	RIOK1	60	42.241	Macaca_fascicularis
YOR119C	RIO1	96	39.024	ENSMMUG00000015577	RIOK1	60	42.571	Macaca_mulatta
YOR119C	RIO1	96	39.554	ENSMNEG00000034396	RIOK1	72	41.576	Macaca_nemestrina
YOR119C	RIO1	99	38.416	ENSMLEG00000026327	RIOK1	62	41.598	Mandrillus_leucophaeus
YOR119C	RIO1	71	39.669	ENSMAMG00000019557	riok1	62	39.503	Mastacembelus_armatus
YOR119C	RIO1	96	36.570	ENSMZEG00005019482	riok1	62	39.779	Maylandia_zebra
YOR119C	RIO1	96	37.552	ENSMGAG00000003816	RIOK1	63	40.369	Meleagris_gallopavo
YOR119C	RIO1	91	39.783	ENSMAUG00000012751	Riok1	52	43.293	Mesocricetus_auratus
YOR119C	RIO1	96	37.843	ENSMICG00000044301	RIOK1	50	41.576	Microcebus_murinus
YOR119C	RIO1	95	37.475	ENSMOCG00000017032	Riok1	57	41.127	Microtus_ochrogaster
YOR119C	RIO1	58	44.746	ENSMMOG00000020598	riok1	50	44.746	Mola_mola
YOR119C	RIO1	95	37.577	ENSMODG00000009964	RIOK1	59	40.997	Monodelphis_domestica
YOR119C	RIO1	96	35.789	ENSMALG00000019982	riok1	70	40.336	Monopterus_albus
YOR119C	RIO1	91	37.445	MGP_CAROLIEiJ_G0018439	Riok1	52	41.768	Mus_caroli
YOR119C	RIO1	91	37.093	ENSMUSG00000021428	Riok1	64	43.137	Mus_musculus
YOR119C	RIO1	91	37.310	MGP_PahariEiJ_G0019507	Riok1	52	41.768	Mus_pahari
YOR119C	RIO1	91	36.989	MGP_SPRETEiJ_G0019319	Riok1	52	41.768	Mus_spretus
YOR119C	RIO1	96	37.475	ENSMPUG00000000570	RIOK1	59	41.576	Mustela_putorius_furo
YOR119C	RIO1	96	38.323	ENSMLUG00000015312	RIOK1	59	41.848	Myotis_lucifugus
YOR119C	RIO1	96	38.878	ENSNGAG00000021734	Riok1	60	42.120	Nannospalax_galili
YOR119C	RIO1	71	39.669	ENSNBRG00000017489	riok1	65	39.669	Neolamprologus_brichardi
YOR119C	RIO1	96	35.714	ENSNLEG00000011621	RIOK1	68	35.732	Nomascus_leucogenys
YOR119C	RIO1	71	36.338	ENSOPRG00000009524	RIOK1	86	36.338	Ochotona_princeps
YOR119C	RIO1	60	38.689	ENSODEG00000005663	RIOK1	66	38.689	Octodon_degus
YOR119C	RIO1	71	39.669	ENSONIG00000014010	riok1	61	39.779	Oreochromis_niloticus
YOR119C	RIO1	95	36.072	ENSOANG00000012553	RIOK1	72	41.274	Ornithorhynchus_anatinus
YOR119C	RIO1	96	37.423	ENSOCUG00000011824	RIOK1	56	40.845	Oryctolagus_cuniculus
YOR119C	RIO1	97	36.179	ENSORLG00000008221	riok1	67	38.770	Oryzias_latipes
YOR119C	RIO1	72	39.237	ENSORLG00015009817	riok1	63	39.237	Oryzias_latipes_hsok
YOR119C	RIO1	72	39.510	ENSOMEG00000002758	riok1	57	39.510	Oryzias_melastigma
YOR119C	RIO1	73	40.800	ENSOGAG00000010192	RIOK1	62	40.800	Otolemur_garnettii
YOR119C	RIO1	96	38.124	ENSOARG00000017747	RIOK1	59	41.848	Ovis_aries
YOR119C	RIO1	91	35.032	ENSPPAG00000016349	RIOK1	64	37.674	Pan_paniscus
YOR119C	RIO1	96	36.864	ENSPPRG00000001932	RIOK1	59	41.033	Panthera_pardus
YOR119C	RIO1	96	36.864	ENSPTIG00000018545	RIOK1	59	41.033	Panthera_tigris_altaica
YOR119C	RIO1	96	38.356	ENSPTRG00000017700	RIOK1	59	41.576	Pan_troglodytes
YOR119C	RIO1	96	38.980	ENSPANG00000016522	RIOK1	60	42.241	Papio_anubis
YOR119C	RIO1	96	35.246	ENSPKIG00000006442	riok1	61	39.612	Paramormyrops_kingsleyae
YOR119C	RIO1	96	37.126	ENSPSIG00000006488	RIOK1	59	40.761	Pelodiscus_sinensis
YOR119C	RIO1	71	40.741	ENSPMGG00000017807	riok1	79	38.702	Periophthalmus_magnuspinnatus
YOR119C	RIO1	96	37.551	ENSPEMG00000017844	Riok1	57	41.408	Peromyscus_maniculatus_bairdii
YOR119C	RIO1	59	44.702	ENSPMAG00000006351	riok1	67	44.262	Petromyzon_marinus
YOR119C	RIO1	71	43.266	ENSPCIG00000012653	RIOK1	57	43.266	Phascolarctos_cinereus
YOR119C	RIO1	98	36.032	ENSPFOG00000011532	riok1	66	38.342	Poecilia_formosa
YOR119C	RIO1	76	38.342	ENSPLAG00000001341	riok1	66	38.342	Poecilia_latipinna
YOR119C	RIO1	98	36.032	ENSPMEG00000007710	riok1	68	38.342	Poecilia_mexicana
YOR119C	RIO1	98	35.976	ENSPREG00000009237	riok1	66	38.830	Poecilia_reticulata
YOR119C	RIO1	96	38.800	ENSPPYG00000016207	RIOK1	59	41.576	Pongo_abelii
YOR119C	RIO1	91	33.983	ENSPCAG00000007892	RIOK1	53	36.585	Procavia_capensis
YOR119C	RIO1	96	38.277	ENSPVAG00000014091	RIOK1	59	41.576	Pteropus_vampyrus
YOR119C	RIO1	67	32.931	ENSPNYG00000004465	riok1	65	36.538	Pundamilia_nyererei
YOR119C	RIO1	96	36.508	ENSPNAG00000015435	riok1	60	40.379	Pygocentrus_nattereri
YOR119C	RIO1	96	35.861	ENSRNOG00000014049	Riok1	69	39.155	Rattus_norvegicus
YOR119C	RIO1	96	38.571	ENSRBIG00000036685	RIOK1	60	42.241	Rhinopithecus_bieti
YOR119C	RIO1	96	38.571	ENSRROG00000036611	RIOK1	60	42.241	Rhinopithecus_roxellana
YOR119C	RIO1	96	38.525	ENSSBOG00000012588	RIOK1	72	37.028	Saimiri_boliviensis_boliviensis
YOR119C	RIO1	71	41.667	ENSSHAG00000003091	RIOK1	62	41.667	Sarcophilus_harrisii
YOR119C	RIO1	95	36.939	ENSSFOG00015001035	riok1	61	40.274	Scleropages_formosus
YOR119C	RIO1	67	35.455	ENSSDUG00000007291	riok1	68	37.799	Seriola_dumerili
YOR119C	RIO1	96	37.552	ENSSLDG00000017657	riok1	62	40.331	Seriola_lalandi_dorsalis
YOR119C	RIO1	95	37.391	ENSSPUG00000007624	RIOK1	57	41.801	Sphenodon_punctatus
YOR119C	RIO1	96	36.810	ENSSPAG00000022710	riok1	64	39.837	Stegastes_partitus
YOR119C	RIO1	96	39.479	ENSSSCG00000001024	RIOK1	62	42.817	Sus_scrofa
YOR119C	RIO1	98	36.489	ENSTGUG00000002331	RIOK1	61	40.642	Taeniopygia_guttata
YOR119C	RIO1	73	35.389	ENSTRUG00000002854	riok1	70	37.736	Takifugu_rubripes
YOR119C	RIO1	54	32.075	ENSTRUG00000001575	-	51	38.889	Takifugu_rubripes
YOR119C	RIO1	96	34.827	ENSTNIG00000003078	riok1	61	39.130	Tetraodon_nigroviridis
YOR119C	RIO1	96	35.642	ENSTBEG00000016730	RIOK1	59	39.130	Tupaia_belangeri
YOR119C	RIO1	71	41.127	ENSTTRG00000017335	RIOK1	67	41.127	Tursiops_truncatus
YOR119C	RIO1	71	41.848	ENSUAMG00000003721	RIOK1	60	41.848	Ursus_americanus
YOR119C	RIO1	96	38.353	ENSUMAG00000018461	RIOK1	59	41.848	Ursus_maritimus
YOR119C	RIO1	96	38.124	ENSVVUG00000005018	RIOK1	59	41.304	Vulpes_vulpes
YOR119C	RIO1	96	39.030	ENSXETG00000020436	riok1	58	43.059	Xenopus_tropicalis
YOR119C	RIO1	98	35.639	ENSXCOG00000000245	riok1	74	38.227	Xiphophorus_couchianus
YOR119C	RIO1	74	38.259	ENSXMAG00000014572	riok1	68	38.259	Xiphophorus_maculatus