EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Paralogs

Orthologs

Description

Ensembl ID: YOR341W (Gene tree)
Gene ID: -
Gene Symbol: RPA190
Alias: RRN1
Full Name: RNA polymerase I largest subunit A190
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 4995 bases
Position: chrXV:960987-965981
Accession: S000005868
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YOR341W_mRNA	RNA_pol_Rpb1_5	PF04998.17	6.4e-101	1	1
YOR341W_mRNA	RNA_pol_Rpb1_4	PF05000.17	3.5e-24	1	1
YOR341W_mRNA	RNA_pol_Rpb1_2	PF00623.20	2.2e-71	1	1
YOR341W_mRNA	RNA_pol_Rpb1_3	PF04983.18	1.9e-39	1	1
YOR341W_mRNA	RNA_pol_Rpb1_1	PF04997.12	2e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YOR341W's gene model file

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YOR341W	RPA190	67	45.455	YDL140C	RPO21	53	53.521
YOR341W	RPA190	65	32.099	YOR116C	RPO31	74	32.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YOR341W	RPA190	99	37.187	ENSG00000068654	POLR1A	99	36.949	Homo_sapiens
YOR341W	RPA190	69	37.620	ENSAPOG00000017945	polr1a	99	37.970	Acanthochromis_polyacanthus
YOR341W	RPA190	99	36.471	ENSAMEG00000005807	POLR1A	99	39.279	Ailuropoda_melanoleuca
YOR341W	RPA190	86	46.923	ENSACIG00000022147	polr1a	94	46.923	Amphilophus_citrinellus
YOR341W	RPA190	99	35.497	ENSAOCG00000017336	polr1a	99	43.885	Amphiprion_ocellaris
YOR341W	RPA190	99	35.440	ENSAPEG00000016105	polr1a	95	43.885	Amphiprion_percula
YOR341W	RPA190	99	35.581	ENSATEG00000016773	polr1a	99	36.116	Anabas_testudineus
YOR341W	RPA190	81	38.305	ENSAPLG00000013871	POLR1A	99	38.525	Anas_platyrhynchos
YOR341W	RPA190	99	37.734	ENSACAG00000012141	POLR1A	99	37.663	Anolis_carolinensis
YOR341W	RPA190	99	36.527	ENSANAG00000033927	POLR1A	99	36.751	Aotus_nancymaae
YOR341W	RPA190	87	46.763	ENSACLG00000020541	polr1a	93	46.763	Astatotilapia_calliptera
YOR341W	RPA190	99	36.548	ENSBTAG00000006481	POLR1A	99	36.661	Bos_taurus
YOR341W	RPA190	98	33.578	WBGene00012999	rpoa-1	78	52.688	Caenorhabditis_elegans
YOR341W	RPA190	99	37.409	ENSCJAG00000019547	POLR1A	99	37.458	Callithrix_jacchus
YOR341W	RPA190	99	36.486	ENSCAFG00000007613	POLR1A	99	36.753	Canis_familiaris
YOR341W	RPA190	90	47.692	ENSCAFG00020014752	POLR1A	94	47.692	Canis_lupus_dingo
YOR341W	RPA190	99	37.358	ENSCHIG00000018204	POLR1A	99	37.052	Capra_hircus
YOR341W	RPA190	99	36.717	ENSTSYG00000002761	POLR1A	99	36.738	Carlito_syrichta
YOR341W	RPA190	97	35.443	ENSCAPG00000010132	POLR1A	99	35.760	Cavia_aperea
YOR341W	RPA190	99	36.972	ENSCPOG00000012350	POLR1A	99	37.571	Cavia_porcellus
YOR341W	RPA190	99	36.577	ENSCCAG00000019839	POLR1A	99	36.624	Cebus_capucinus
YOR341W	RPA190	99	37.010	ENSCATG00000029786	POLR1A	99	36.877	Cercocebus_atys
YOR341W	RPA190	99	36.768	ENSCLAG00000005187	POLR1A	99	36.798	Chinchilla_lanigera
YOR341W	RPA190	99	36.907	ENSCSAG00000016251	POLR1A	99	36.954	Chlorocebus_sabaeus
YOR341W	RPA190	99	37.754	ENSCPBG00000001115	POLR1A	99	37.592	Chrysemys_picta_bellii
YOR341W	RPA190	99	39.161	ENSCSAVG00000007184	-	99	38.539	Ciona_savignyi
YOR341W	RPA190	99	35.619	ENSCANG00000031785	POLR1A	99	35.714	Colobus_angolensis_palliatus
YOR341W	RPA190	99	35.524	ENSCGRG00001006651	Polr1a	99	35.198	Cricetulus_griseus_chok1gshd
YOR341W	RPA190	56	35.528	ENSCGRG00000010834	Polr1a	99	35.645	Cricetulus_griseus_crigri
YOR341W	RPA190	99	35.291	ENSCSEG00000020190	polr1a	99	35.020	Cynoglossus_semilaevis
YOR341W	RPA190	99	36.353	ENSCVAG00000020941	polr1a	99	36.546	Cyprinodon_variegatus
YOR341W	RPA190	99	37.217	ENSDARG00000098375	polr1a	99	37.161	Danio_rerio
YOR341W	RPA190	99	36.220	ENSDNOG00000010829	POLR1A	99	36.072	Dasypus_novemcinctus
YOR341W	RPA190	99	36.702	ENSDORG00000008298	Polr1a	99	36.620	Dipodomys_ordii
YOR341W	RPA190	79	40.561	FBgn0019938	RpI1	90	38.281	Drosophila_melanogaster
YOR341W	RPA190	72	34.232	ENSETEG00000000412	-	69	34.232	Echinops_telfairi
YOR341W	RPA190	87	34.671	ENSEBUG00000005667	-	99	35.117	Eptatretus_burgeri
YOR341W	RPA190	99	36.603	ENSEASG00005001625	POLR1A	99	36.491	Equus_asinus_asinus
YOR341W	RPA190	99	36.547	ENSECAG00000036306	-	99	36.318	Equus_caballus
YOR341W	RPA190	93	52.941	ENSECAG00000010092	POLR1A	98	52.941	Equus_caballus
YOR341W	RPA190	93	52.941	ENSECAG00000030510	-	98	52.941	Equus_caballus
YOR341W	RPA190	72	51.807	ENSEEUG00000000676	POLR1A	72	51.807	Erinaceus_europaeus
YOR341W	RPA190	99	36.215	ENSELUG00000012769	polr1a	98	36.420	Esox_lucius
YOR341W	RPA190	99	36.302	ENSFCAG00000008966	POLR1A	99	36.522	Felis_catus
YOR341W	RPA190	98	37.514	ENSFALG00000010082	POLR1A	99	37.699	Ficedula_albicollis
YOR341W	RPA190	99	36.866	ENSFDAG00000013726	POLR1A	99	37.177	Fukomys_damarensis
YOR341W	RPA190	90	38.285	ENSFHEG00000005996	polr1a	93	44.615	Fundulus_heteroclitus
YOR341W	RPA190	85	39.231	ENSGMOG00000002230	polr1a	94	39.231	Gadus_morhua
YOR341W	RPA190	88	37.688	ENSGALG00000038160	-	97	38.122	Gallus_gallus
YOR341W	RPA190	88	46.094	ENSGAFG00000015266	polr1a	94	47.200	Gambusia_affinis
YOR341W	RPA190	99	36.127	ENSGACG00000018791	polr1a	99	36.074	Gasterosteus_aculeatus
YOR341W	RPA190	87	38.462	ENSGAGG00000004984	-	99	38.477	Gopherus_agassizii
YOR341W	RPA190	99	36.960	ENSGGOG00000001788	POLR1A	99	36.933	Gorilla_gorilla
YOR341W	RPA190	77	45.714	ENSHBUG00000020021	polr1a	88	45.714	Haplochromis_burtoni
YOR341W	RPA190	99	36.806	ENSHGLG00000006334	POLR1A	99	36.708	Heterocephalus_glaber_female
YOR341W	RPA190	99	36.759	ENSHGLG00100006614	POLR1A	99	36.661	Heterocephalus_glaber_male
YOR341W	RPA190	86	42.958	ENSHCOG00000003345	polr1a	94	42.958	Hippocampus_comes
YOR341W	RPA190	99	36.708	ENSIPUG00000013174	polr1a	99	36.708	Ictalurus_punctatus
YOR341W	RPA190	99	37.056	ENSSTOG00000012580	POLR1A	99	37.196	Ictidomys_tridecemlineatus
YOR341W	RPA190	99	37.177	ENSJJAG00000013113	Polr1a	99	37.571	Jaculus_jaculus
YOR341W	RPA190	99	36.938	ENSKMAG00000007399	polr1a	99	36.851	Kryptolebias_marmoratus
YOR341W	RPA190	86	43.077	ENSLBEG00000015401	polr1a	95	43.077	Labrus_bergylta
YOR341W	RPA190	56	38.501	ENSLACG00000003218	polr1a	99	38.501	Latimeria_chalumnae
YOR341W	RPA190	99	37.045	ENSLOCG00000010881	polr1a	99	37.329	Lepisosteus_oculatus
YOR341W	RPA190	99	36.958	ENSLAFG00000014948	POLR1A	99	36.836	Loxodonta_africana
YOR341W	RPA190	99	36.989	ENSMFAG00000046097	POLR1A	99	37.025	Macaca_fascicularis
YOR341W	RPA190	99	36.989	ENSMMUG00000015815	POLR1A	99	37.025	Macaca_mulatta
YOR341W	RPA190	99	37.010	ENSMNEG00000043313	POLR1A	99	37.045	Macaca_nemestrina
YOR341W	RPA190	99	36.872	ENSMLEG00000042428	POLR1A	99	37.010	Mandrillus_leucophaeus
YOR341W	RPA190	99	36.731	ENSMAMG00000016565	polr1a	99	36.707	Mastacembelus_armatus
YOR341W	RPA190	99	36.048	ENSMZEG00005004915	polr1a	99	36.214	Maylandia_zebra
YOR341W	RPA190	99	37.634	ENSMGAG00000013111	POLR1A	99	37.578	Meleagris_gallopavo
YOR341W	RPA190	89	36.731	ENSMAUG00000008497	Polr1a	99	36.731	Mesocricetus_auratus
YOR341W	RPA190	99	36.695	ENSMICG00000000757	POLR1A	99	37.037	Microcebus_murinus
YOR341W	RPA190	99	37.146	ENSMOCG00000000122	Polr1a	99	37.238	Microtus_ochrogaster
YOR341W	RPA190	99	36.254	ENSMMOG00000010216	polr1a	99	36.087	Mola_mola
YOR341W	RPA190	99	35.389	ENSMODG00000009335	POLR1A	86	42.276	Monodelphis_domestica
YOR341W	RPA190	99	36.162	ENSMALG00000013363	polr1a	94	43.846	Monopterus_albus
YOR341W	RPA190	99	36.523	MGP_CAROLIEiJ_G0028494	Polr1a	99	36.729	Mus_caroli
YOR341W	RPA190	99	35.932	ENSMUSG00000049553	Polr1a	99	36.518	Mus_musculus
YOR341W	RPA190	99	36.815	MGP_PahariEiJ_G0022230	Polr1a	99	36.893	Mus_pahari
YOR341W	RPA190	99	35.813	MGP_SPRETEiJ_G0029499	Polr1a	99	36.096	Mus_spretus
YOR341W	RPA190	99	36.399	ENSMPUG00000009135	POLR1A	99	36.353	Mustela_putorius_furo
YOR341W	RPA190	99	37.199	ENSMLUG00000015723	POLR1A	99	37.226	Myotis_lucifugus
YOR341W	RPA190	80	38.397	ENSNGAG00000017907	Polr1a	99	36.568	Nannospalax_galili
YOR341W	RPA190	99	35.986	ENSNBRG00000000519	polr1a	99	36.157	Neolamprologus_brichardi
YOR341W	RPA190	99	36.100	ENSNLEG00000002264	POLR1A	99	35.862	Nomascus_leucogenys
YOR341W	RPA190	53	50.000	ENSMEUG00000011665	-	56	50.000	Notamacropus_eugenii
YOR341W	RPA190	91	49.398	ENSOPRG00000008269	POLR1A	94	49.398	Ochotona_princeps
YOR341W	RPA190	99	36.800	ENSODEG00000003542	POLR1A	99	36.708	Octodon_degus
YOR341W	RPA190	99	35.698	ENSONIG00000015895	polr1a	99	36.216	Oreochromis_niloticus
YOR341W	RPA190	99	37.041	ENSOCUG00000010138	POLR1A	99	37.029	Oryctolagus_cuniculus
YOR341W	RPA190	99	36.759	ENSORLG00000008753	polr1a	99	36.712	Oryzias_latipes
YOR341W	RPA190	87	43.791	ENSORLG00020020726	polr1a	92	43.791	Oryzias_latipes_hni
YOR341W	RPA190	84	56.627	ENSORLG00015016071	polr1a	93	56.627	Oryzias_latipes_hsok
YOR341W	RPA190	99	36.848	ENSOGAG00000004031	POLR1A	99	36.946	Otolemur_garnettii
YOR341W	RPA190	99	36.461	ENSOARG00000020601	POLR1A	99	36.972	Ovis_aries
YOR341W	RPA190	99	36.898	ENSPPAG00000042450	POLR1A	99	36.948	Pan_paniscus
YOR341W	RPA190	99	36.471	ENSPPRG00000006702	POLR1A	99	36.220	Panthera_pardus
YOR341W	RPA190	99	36.292	ENSPTIG00000018783	POLR1A	99	36.043	Panthera_tigris_altaica
YOR341W	RPA190	99	36.948	ENSPTRG00000012147	POLR1A	99	36.892	Pan_troglodytes
YOR341W	RPA190	99	36.954	ENSPANG00000025908	POLR1A	99	36.821	Papio_anubis
YOR341W	RPA190	99	36.766	ENSPKIG00000005468	polr1a	97	46.094	Paramormyrops_kingsleyae
YOR341W	RPA190	59	35.397	ENSPSIG00000009321	-	99	35.867	Pelodiscus_sinensis
YOR341W	RPA190	99	36.687	ENSPEMG00000022224	Polr1a	99	36.706	Peromyscus_maniculatus_bairdii
YOR341W	RPA190	95	35.664	ENSPCIG00000004222	POLR1A	99	35.773	Phascolarctos_cinereus
YOR341W	RPA190	99	35.775	ENSPFOG00000005025	polr1a	99	36.297	Poecilia_formosa
YOR341W	RPA190	99	36.043	ENSPLAG00000021389	polr1a	99	35.812	Poecilia_latipinna
YOR341W	RPA190	94	38.462	ENSPMEG00000006463	polr1a	98	38.592	Poecilia_mexicana
YOR341W	RPA190	88	46.610	ENSPREG00000002389	polr1a	95	46.610	Poecilia_reticulata
YOR341W	RPA190	99	36.756	ENSPPYG00000012217	POLR1A	99	36.833	Pongo_abelii
YOR341W	RPA190	63	48.961	ENSPCAG00000011582	POLR1A	67	48.961	Procavia_capensis
YOR341W	RPA190	99	36.491	ENSPCOG00000026987	POLR1A	99	36.818	Propithecus_coquereli
YOR341W	RPA190	89	38.170	ENSPVAG00000012674	POLR1A	90	38.307	Pteropus_vampyrus
YOR341W	RPA190	99	36.333	ENSPNYG00000000026	polr1a	95	46.763	Pundamilia_nyererei
YOR341W	RPA190	99	35.743	ENSPNAG00000019223	polr1a	95	42.969	Pygocentrus_nattereri
YOR341W	RPA190	99	36.955	ENSRNOG00000009545	Polr1a	99	36.955	Rattus_norvegicus
YOR341W	RPA190	99	36.921	ENSRBIG00000028335	POLR1A	99	37.136	Rhinopithecus_bieti
YOR341W	RPA190	97	41.472	ENSRROG00000031473	POLR1A	99	37.192	Rhinopithecus_roxellana
YOR341W	RPA190	99	36.552	ENSSBOG00000030262	POLR1A	99	36.706	Saimiri_boliviensis_boliviensis
YOR341W	RPA190	99	33.668	ENSSHAG00000014739	POLR1A	99	33.895	Sarcophilus_harrisii
YOR341W	RPA190	99	36.322	ENSSFOG00015019716	polr1a	99	36.693	Scleropages_formosus
YOR341W	RPA190	99	36.519	ENSSMAG00000014342	polr1a	94	44.615	Scophthalmus_maximus
YOR341W	RPA190	99	35.702	ENSSDUG00000014631	polr1a	99	35.921	Seriola_dumerili
YOR341W	RPA190	86	44.615	ENSSLDG00000024095	polr1a	94	44.615	Seriola_lalandi_dorsalis
YOR341W	RPA190	67	84.615	ENSSARG00000003136	-	70	84.615	Sorex_araneus
YOR341W	RPA190	99	36.322	ENSSPUG00000004215	POLR1A	99	36.416	Sphenodon_punctatus
YOR341W	RPA190	58	42.446	ENSSPAG00000016341	polr1a	90	42.446	Stegastes_partitus
YOR341W	RPA190	84	37.977	ENSSSCG00000008226	POLR1A	99	37.977	Sus_scrofa
YOR341W	RPA190	98	37.621	ENSTGUG00000010704	POLR1A	99	37.621	Taeniopygia_guttata
YOR341W	RPA190	99	35.678	ENSTRUG00000002210	polr1a	97	37.687	Takifugu_rubripes
YOR341W	RPA190	99	33.575	ENSTNIG00000010116	polr1a	99	33.575	Tetraodon_nigroviridis
YOR341W	RPA190	62	55.411	ENSTBEG00000008646	POLR1A	63	55.411	Tupaia_belangeri
YOR341W	RPA190	96	38.806	ENSTTRG00000008597	POLR1A	93	38.806	Tursiops_truncatus
YOR341W	RPA190	65	37.669	ENSUAMG00000012158	-	94	37.838	Ursus_americanus
YOR341W	RPA190	99	36.389	ENSUMAG00000006700	POLR1A	92	46.923	Ursus_maritimus
YOR341W	RPA190	99	36.655	ENSVVUG00000001245	POLR1A	99	37.050	Vulpes_vulpes
YOR341W	RPA190	99	35.814	ENSXETG00000001952	polr1a	99	36.230	Xenopus_tropicalis
YOR341W	RPA190	99	36.156	ENSXMAG00000004032	polr1a	99	36.197	Xiphophorus_maculatus