EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPL104W (Gene tree)
Gene ID: -
Gene Symbol: MSD1
Alias: LPG5
Full Name: Mitochondrial aspartyl-tRNA synthetase%3B required for acylation of aspartyl-tRNA%3B yeast and bacterial aspartyl-%2C asparaginyl-%2C and lysyl-tRNA synthetases contain regions with high sequence similarity%2C suggesting a common ancestral gene
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1977 bases
Position: chrXVI:355700-357676
Accession: S000006025
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL104W_mRNA	tRNA_anti-codon	PF01336.25	2.3e-07	1	1
YPL104W_mRNA	tRNA-synt_2	PF00152.20	1.2e-101	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL104W_mRNA	-	1977	-	YPL104W_mRNA	658 (aa)	-	P15179

Gene Model

Click here to download YPL104W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL104W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL104W	MSD1	99	33.881	ENSG00000117593	DARS2	80	47.945	Homo_sapiens
YPL104W	MSD1	94	34.604	ENSAPOG00000023313	dars2	88	34.604	Acanthochromis_polyacanthus
YPL104W	MSD1	51	32.927	ENSAMEG00000005881	DARS	81	32.927	Ailuropoda_melanoleuca
YPL104W	MSD1	95	34.206	ENSAMEG00000015617	DARS2	90	34.206	Ailuropoda_melanoleuca
YPL104W	MSD1	94	34.681	ENSACIG00000001777	dars2	88	34.681	Amphilophus_citrinellus
YPL104W	MSD1	94	34.312	ENSAOCG00000011976	dars2	83	34.312	Amphiprion_ocellaris
YPL104W	MSD1	94	34.681	ENSAPEG00000007891	dars2	92	34.681	Amphiprion_percula
YPL104W	MSD1	94	34.716	ENSATEG00000002262	dars2	89	34.716	Anabas_testudineus
YPL104W	MSD1	95	34.498	ENSAPLG00000009344	DARS2	98	34.962	Anas_platyrhynchos
YPL104W	MSD1	54	39.286	ENSACAG00000012231	NARS2	74	39.286	Anolis_carolinensis
YPL104W	MSD1	95	33.436	ENSACAG00000015426	DARS2	93	33.436	Anolis_carolinensis
YPL104W	MSD1	94	32.774	ENSANAG00000021693	DARS2	90	32.774	Aotus_nancymaae
YPL104W	MSD1	94	34.123	ENSACLG00000002899	dars2	91	34.123	Astatotilapia_calliptera
YPL104W	MSD1	94	33.125	ENSAMXG00000009468	dars2	94	33.125	Astyanax_mexicanus
YPL104W	MSD1	99	33.576	ENSBTAG00000004358	DARS2	96	33.576	Bos_taurus
YPL104W	MSD1	51	32.927	ENSBTAG00000009949	DARS	69	32.927	Bos_taurus
YPL104W	MSD1	94	32.551	WBGene00001095	dars-2	95	32.551	Caenorhabditis_elegans
YPL104W	MSD1	94	34.198	ENSCJAG00000009241	DARS2	91	34.198	Callithrix_jacchus
YPL104W	MSD1	98	35.059	ENSCAFG00000014522	DARS2	93	35.059	Canis_familiaris
YPL104W	MSD1	51	32.927	ENSCAFG00000005161	DARS	69	32.927	Canis_familiaris
YPL104W	MSD1	98	35.059	ENSCAFG00020017227	DARS2	95	35.518	Canis_lupus_dingo
YPL104W	MSD1	51	32.927	ENSCAFG00020016165	DARS	69	32.927	Canis_lupus_dingo
YPL104W	MSD1	99	33.237	ENSCHIG00000024830	DARS2	96	33.237	Capra_hircus
YPL104W	MSD1	51	32.927	ENSTSYG00000012049	DARS	69	32.927	Carlito_syrichta
YPL104W	MSD1	95	34.769	ENSTSYG00000001617	DARS2	72	34.769	Carlito_syrichta
YPL104W	MSD1	95	35.077	ENSCPOG00000010575	DARS2	90	35.077	Cavia_porcellus
YPL104W	MSD1	51	32.927	ENSCPOG00000004614	DARS	69	32.927	Cavia_porcellus
YPL104W	MSD1	94	34.526	ENSCCAG00000029862	DARS2	91	34.504	Cebus_capucinus
YPL104W	MSD1	95	33.945	ENSCATG00000032831	DARS2	91	33.945	Cercocebus_atys
YPL104W	MSD1	51	32.927	ENSCLAG00000006355	DARS	69	32.927	Chinchilla_lanigera
YPL104W	MSD1	95	34.202	ENSCLAG00000008286	DARS2	90	34.202	Chinchilla_lanigera
YPL104W	MSD1	95	33.945	ENSCSAG00000011807	DARS2	91	33.945	Chlorocebus_sabaeus
YPL104W	MSD1	78	46.512	ENSCHOG00000007949	DARS2	73	46.512	Choloepus_hoffmanni
YPL104W	MSD1	52	33.721	ENSCPBG00000010133	DARS	66	33.721	Chrysemys_picta_bellii
YPL104W	MSD1	95	33.128	ENSCPBG00000014727	DARS2	91	33.128	Chrysemys_picta_bellii
YPL104W	MSD1	95	33.951	ENSCING00000020685	-	98	33.951	Ciona_intestinalis
YPL104W	MSD1	99	33.726	ENSCANG00000018132	DARS2	94	33.726	Colobus_angolensis_palliatus
YPL104W	MSD1	51	32.927	ENSCGRG00001022990	Dars	69	32.927	Cricetulus_griseus_chok1gshd
YPL104W	MSD1	95	34.515	ENSCGRG00001021217	Dars2	90	34.515	Cricetulus_griseus_chok1gshd
YPL104W	MSD1	95	34.515	ENSCGRG00000018286	Dars2	90	34.515	Cricetulus_griseus_crigri
YPL104W	MSD1	51	32.927	ENSCGRG00000013315	-	69	32.927	Cricetulus_griseus_crigri
YPL104W	MSD1	94	33.735	ENSCSEG00000017136	dars2	88	33.735	Cynoglossus_semilaevis
YPL104W	MSD1	99	33.821	ENSCVAG00000017840	dars2	94	33.821	Cyprinodon_variegatus
YPL104W	MSD1	98	34.172	ENSDARG00000060861	dars2	91	34.172	Danio_rerio
YPL104W	MSD1	95	34.716	ENSDNOG00000007070	DARS2	90	34.716	Dasypus_novemcinctus
YPL104W	MSD1	51	31.707	ENSDORG00000013479	Dars	69	31.707	Dipodomys_ordii
YPL104W	MSD1	95	34.763	ENSDORG00000014074	Dars2	94	34.508	Dipodomys_ordii
YPL104W	MSD1	61	36.585	ENSETEG00000019311	DARS2	60	36.585	Echinops_telfairi
YPL104W	MSD1	94	32.663	ENSEBUG00000010331	dars2	90	32.663	Eptatretus_burgeri
YPL104W	MSD1	51	32.927	ENSEASG00005007349	DARS	69	32.927	Equus_asinus_asinus
YPL104W	MSD1	95	34.251	ENSEASG00005017080	DARS2	93	33.676	Equus_asinus_asinus
YPL104W	MSD1	51	32.927	ENSECAG00000024197	DARS	69	32.927	Equus_caballus
YPL104W	MSD1	95	34.251	ENSECAG00000004044	DARS2	93	34.251	Equus_caballus
YPL104W	MSD1	95	33.642	ENSELUG00000010663	dars2	88	33.642	Esox_lucius
YPL104W	MSD1	95	33.590	ENSFCAG00000014922	DARS2	97	32.849	Felis_catus
YPL104W	MSD1	95	34.456	ENSFALG00000007984	DARS2	94	34.337	Ficedula_albicollis
YPL104W	MSD1	95	34.722	ENSFDAG00000003561	DARS2	90	34.722	Fukomys_damarensis
YPL104W	MSD1	97	34.808	ENSFHEG00000001285	dars2	92	34.592	Fundulus_heteroclitus
YPL104W	MSD1	82	35.199	ENSGMOG00000016195	dars2	98	35.199	Gadus_morhua
YPL104W	MSD1	52	33.721	ENSGALG00000012355	DARS	71	33.721	Gallus_gallus
YPL104W	MSD1	95	34.855	ENSGALG00000023749	DARS2	91	34.855	Gallus_gallus
YPL104W	MSD1	99	34.018	ENSGAFG00000006807	dars2	93	34.018	Gambusia_affinis
YPL104W	MSD1	81	35.816	ENSGACG00000014921	dars2	96	35.816	Gasterosteus_aculeatus
YPL104W	MSD1	53	33.721	ENSGAGG00000017647	DARS	68	33.721	Gopherus_agassizii
YPL104W	MSD1	95	31.651	ENSGAGG00000018149	DARS2	91	31.651	Gopherus_agassizii
YPL104W	MSD1	99	33.726	ENSGGOG00000000323	DARS2	94	33.726	Gorilla_gorilla
YPL104W	MSD1	94	34.681	ENSHBUG00000019027	dars2	93	34.681	Haplochromis_burtoni
YPL104W	MSD1	95	34.923	ENSHGLG00000006680	DARS2	89	34.923	Heterocephalus_glaber_female
YPL104W	MSD1	95	34.923	ENSHGLG00100008754	DARS2	90	34.923	Heterocephalus_glaber_male
YPL104W	MSD1	93	33.281	ENSHCOG00000014226	dars2	95	33.079	Hippocampus_comes
YPL104W	MSD1	74	46.746	ENSIPUG00000017874	dars2	68	46.746	Ictalurus_punctatus
YPL104W	MSD1	95	35.098	ENSSTOG00000015250	DARS2	90	35.098	Ictidomys_tridecemlineatus
YPL104W	MSD1	51	32.927	ENSSTOG00000006292	DARS	69	32.927	Ictidomys_tridecemlineatus
YPL104W	MSD1	95	33.896	ENSJJAG00000024152	Dars2	89	33.896	Jaculus_jaculus
YPL104W	MSD1	94	34.656	ENSKMAG00000009973	dars2	93	35.601	Kryptolebias_marmoratus
YPL104W	MSD1	94	34.251	ENSLBEG00000020557	dars2	92	34.236	Labrus_bergylta
YPL104W	MSD1	95	33.032	ENSLACG00000011843	DARS2	94	33.032	Latimeria_chalumnae
YPL104W	MSD1	57	32.927	ENSLOCG00000000902	dars	75	32.927	Lepisosteus_oculatus
YPL104W	MSD1	94	33.796	ENSLOCG00000009206	dars2	96	33.796	Lepisosteus_oculatus
YPL104W	MSD1	51	32.955	ENSLAFG00000015092	DARS	69	32.955	Loxodonta_africana
YPL104W	MSD1	98	33.830	ENSLAFG00000008719	DARS2	93	33.830	Loxodonta_africana
YPL104W	MSD1	95	33.945	ENSMFAG00000003036	DARS2	91	33.945	Macaca_fascicularis
YPL104W	MSD1	95	33.945	ENSMMUG00000022798	DARS2	91	33.945	Macaca_mulatta
YPL104W	MSD1	91	34.290	ENSMNEG00000045415	DARS2	93	34.290	Macaca_nemestrina
YPL104W	MSD1	95	33.232	ENSMLEG00000044248	DARS2	91	33.232	Mandrillus_leucophaeus
YPL104W	MSD1	98	33.530	ENSMAMG00000011486	dars2	92	33.530	Mastacembelus_armatus
YPL104W	MSD1	94	34.272	ENSMZEG00005010481	dars2	87	34.272	Maylandia_zebra
YPL104W	MSD1	95	35.276	ENSMGAG00000003388	DARS2	92	35.276	Meleagris_gallopavo
YPL104W	MSD1	55	44.828	ENSMAUG00000002392	Dars2	85	44.828	Mesocricetus_auratus
YPL104W	MSD1	90	33.548	ENSMICG00000002969	DARS2	91	33.548	Microcebus_murinus
YPL104W	MSD1	86	35.666	ENSMOCG00000020112	Dars2	84	35.666	Microtus_ochrogaster
YPL104W	MSD1	57	30.488	ENSMMOG00000005673	dars	81	30.488	Mola_mola
YPL104W	MSD1	94	34.395	ENSMMOG00000021524	dars2	98	34.395	Mola_mola
YPL104W	MSD1	99	32.551	ENSMODG00000004188	DARS2	88	32.551	Monodelphis_domestica
YPL104W	MSD1	51	32.927	ENSMODG00000001056	DARS	69	32.927	Monodelphis_domestica
YPL104W	MSD1	94	30.229	ENSMALG00000003413	-	82	30.229	Monopterus_albus
YPL104W	MSD1	94	34.796	MGP_CAROLIEiJ_G0014759	Dars2	89	34.796	Mus_caroli
YPL104W	MSD1	94	34.574	ENSMUSG00000026709	Dars2	90	34.574	Mus_musculus
YPL104W	MSD1	51	32.927	ENSMUSG00000026356	Dars	69	32.927	Mus_musculus
YPL104W	MSD1	94	35.039	MGP_PahariEiJ_G0027995	Dars2	90	35.039	Mus_pahari
YPL104W	MSD1	94	34.574	MGP_SPRETEiJ_G0015566	Dars2	90	34.526	Mus_spretus
YPL104W	MSD1	51	32.927	MGP_SPRETEiJ_G0015354	Dars	69	32.927	Mus_spretus
YPL104W	MSD1	99	33.772	ENSMPUG00000004716	DARS2	93	33.772	Mustela_putorius_furo
YPL104W	MSD1	51	32.927	ENSMPUG00000002259	DARS	69	32.927	Mustela_putorius_furo
YPL104W	MSD1	51	34.146	ENSMLUG00000005671	DARS	69	34.146	Myotis_lucifugus
YPL104W	MSD1	95	34.294	ENSMLUG00000011038	DARS2	93	34.157	Myotis_lucifugus
YPL104W	MSD1	95	34.862	ENSNGAG00000000825	Dars2	90	34.862	Nannospalax_galili
YPL104W	MSD1	51	32.927	ENSNGAG00000010888	-	69	32.927	Nannospalax_galili
YPL104W	MSD1	62	32.394	ENSNBRG00000000638	dars2	70	32.394	Neolamprologus_brichardi
YPL104W	MSD1	99	33.088	ENSNLEG00000015309	DARS2	94	33.088	Nomascus_leucogenys
YPL104W	MSD1	81	38.378	ENSMEUG00000001563	DARS2	77	38.378	Notamacropus_eugenii
YPL104W	MSD1	95	34.154	ENSODEG00000012436	DARS2	91	34.154	Octodon_degus
YPL104W	MSD1	94	34.198	ENSONIG00000016633	dars2	97	34.198	Oreochromis_niloticus
YPL104W	MSD1	95	34.146	ENSOANG00000000921	DARS2	91	34.146	Ornithorhynchus_anatinus
YPL104W	MSD1	97	33.433	ENSOCUG00000007841	DARS2	92	33.433	Oryctolagus_cuniculus
YPL104W	MSD1	98	33.876	ENSORLG00000013328	dars2	93	33.876	Oryzias_latipes
YPL104W	MSD1	98	34.071	ENSORLG00020004408	dars2	96	34.312	Oryzias_latipes_hni
YPL104W	MSD1	98	33.728	ENSORLG00015021058	dars2	93	33.728	Oryzias_latipes_hsok
YPL104W	MSD1	99	33.432	ENSOMEG00000016596	dars2	93	33.432	Oryzias_melastigma
YPL104W	MSD1	95	34.656	ENSOGAG00000004039	DARS2	94	34.068	Otolemur_garnettii
YPL104W	MSD1	99	33.333	ENSOARG00000012642	DARS2	96	33.333	Ovis_aries
YPL104W	MSD1	99	33.726	ENSPPAG00000041909	DARS2	94	33.726	Pan_paniscus
YPL104W	MSD1	99	33.285	ENSPPRG00000010631	DARS2	97	33.285	Panthera_pardus
YPL104W	MSD1	99	33.285	ENSPTIG00000019809	DARS2	97	33.285	Panthera_tigris_altaica
YPL104W	MSD1	51	32.927	ENSPTIG00000004863	DARS	69	32.927	Panthera_tigris_altaica
YPL104W	MSD1	99	33.726	ENSPTRG00000001698	DARS2	94	33.726	Pan_troglodytes
YPL104W	MSD1	94	33.846	ENSPANG00000016074	DARS2	91	33.846	Papio_anubis
YPL104W	MSD1	93	35.127	ENSPKIG00000006591	dars2	89	34.930	Paramormyrops_kingsleyae
YPL104W	MSD1	95	32.975	ENSPSIG00000016813	DARS2	91	32.975	Pelodiscus_sinensis
YPL104W	MSD1	51	31.707	ENSPSIG00000008849	DARS	69	31.707	Pelodiscus_sinensis
YPL104W	MSD1	94	34.158	ENSPMGG00000018525	dars2	94	34.158	Periophthalmus_magnuspinnatus
YPL104W	MSD1	95	34.259	ENSPEMG00000009176	Dars2	90	34.259	Peromyscus_maniculatus_bairdii
YPL104W	MSD1	51	30.488	ENSPMAG00000009116	dars	65	30.488	Petromyzon_marinus
YPL104W	MSD1	95	35.870	ENSPMAG00000008987	dars2	95	35.459	Petromyzon_marinus
YPL104W	MSD1	54	32.432	ENSPCIG00000006838	DARS	76	32.432	Phascolarctos_cinereus
YPL104W	MSD1	98	33.185	ENSPCIG00000003525	DARS2	87	33.185	Phascolarctos_cinereus
YPL104W	MSD1	99	34.298	ENSPFOG00000004144	dars2	93	34.298	Poecilia_formosa
YPL104W	MSD1	99	34.101	ENSPLAG00000015427	dars2	94	34.101	Poecilia_latipinna
YPL104W	MSD1	99	34.298	ENSPMEG00000012688	dars2	93	34.298	Poecilia_mexicana
YPL104W	MSD1	94	31.153	ENSPREG00000014984	dars2	87	31.153	Poecilia_reticulata
YPL104W	MSD1	99	33.579	ENSPPYG00000000493	DARS2	94	33.579	Pongo_abelii
YPL104W	MSD1	51	32.927	ENSPCAG00000016286	DARS	65	32.927	Procavia_capensis
YPL104W	MSD1	66	34.216	ENSPCOG00000013908	DARS2	74	34.216	Propithecus_coquereli
YPL104W	MSD1	99	31.416	ENSPVAG00000007584	DARS2	94	31.416	Pteropus_vampyrus
YPL104W	MSD1	94	34.326	ENSPNYG00000012231	dars2	89	34.326	Pundamilia_nyererei
YPL104W	MSD1	93	34.272	ENSPNAG00000001371	dars2	87	34.272	Pygocentrus_nattereri
YPL104W	MSD1	95	33.951	ENSRNOG00000002813	Dars2	90	33.951	Rattus_norvegicus
YPL104W	MSD1	51	32.927	ENSRNOG00000003743	Dars	69	32.927	Rattus_norvegicus
YPL104W	MSD1	95	34.198	ENSRBIG00000039012	DARS2	91	34.198	Rhinopithecus_bieti
YPL104W	MSD1	95	33.945	ENSRROG00000028963	DARS2	91	33.945	Rhinopithecus_roxellana
YPL104W	MSD1	94	34.504	ENSSBOG00000023515	DARS2	91	34.504	Saimiri_boliviensis_boliviensis
YPL104W	MSD1	51	31.395	ENSSHAG00000001175	DARS	87	31.395	Sarcophilus_harrisii
YPL104W	MSD1	77	44.118	ENSSHAG00000006185	DARS2	69	44.118	Sarcophilus_harrisii
YPL104W	MSD1	94	33.283	ENSSFOG00015018461	dars2	89	33.283	Scleropages_formosus
YPL104W	MSD1	94	33.590	ENSSMAG00000000796	dars2	90	33.590	Scophthalmus_maximus
YPL104W	MSD1	96	33.482	ENSSDUG00000002966	dars2	90	33.482	Seriola_dumerili
YPL104W	MSD1	96	33.185	ENSSLDG00000011067	dars2	89	33.185	Seriola_lalandi_dorsalis
YPL104W	MSD1	98	33.384	ENSSPUG00000018568	DARS2	98	33.384	Sphenodon_punctatus
YPL104W	MSD1	94	35.085	ENSSPAG00000006776	dars2	93	35.085	Stegastes_partitus
YPL104W	MSD1	95	33.539	ENSSSCG00000015492	DARS2	90	33.539	Sus_scrofa
YPL104W	MSD1	51	32.927	ENSSSCG00000015689	DARS	74	32.927	Sus_scrofa
YPL104W	MSD1	95	34.855	ENSTGUG00000017335	DARS2	98	34.855	Taeniopygia_guttata
YPL104W	MSD1	94	32.772	ENSTRUG00000007129	dars2	93	32.772	Takifugu_rubripes
YPL104W	MSD1	52	34.000	ENSTRUG00000013557	nars2	76	34.000	Takifugu_rubripes
YPL104W	MSD1	94	33.282	ENSTNIG00000003303	dars2	96	33.282	Tetraodon_nigroviridis
YPL104W	MSD1	53	46.512	ENSTBEG00000002835	DARS2	61	46.512	Tupaia_belangeri
YPL104W	MSD1	51	32.558	ENSTTRG00000000974	DARS	70	32.558	Tursiops_truncatus
YPL104W	MSD1	75	45.349	ENSTTRG00000008559	DARS2	71	45.349	Tursiops_truncatus
YPL104W	MSD1	99	33.185	ENSUAMG00000019506	DARS2	93	33.185	Ursus_americanus
YPL104W	MSD1	51	32.927	ENSUMAG00000005942	DARS	69	32.927	Ursus_maritimus
YPL104W	MSD1	99	33.185	ENSUMAG00000020024	DARS2	93	33.185	Ursus_maritimus
YPL104W	MSD1	95	35.213	ENSVPAG00000002588	DARS2	91	35.213	Vicugna_pacos
YPL104W	MSD1	51	32.927	ENSVVUG00000007081	DARS	69	32.927	Vulpes_vulpes
YPL104W	MSD1	98	34.615	ENSVVUG00000014380	DARS2	93	34.615	Vulpes_vulpes
YPL104W	MSD1	95	33.075	ENSXETG00000020014	dars2	97	32.680	Xenopus_tropicalis
YPL104W	MSD1	94	34.735	ENSXCOG00000007983	dars2	89	34.735	Xiphophorus_couchianus
YPL104W	MSD1	97	34.763	ENSXMAG00000018529	dars2	95	35.131	Xiphophorus_maculatus