EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YPL119C (Gene tree)
Gene ID: -
Gene Symbol: DBP1
Alias: LPH8
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1854
Position: chrXVI:324411-326264
Accession: S000006040
RBP type: canonical RBP
Summary: Putative ATP-dependent RNA helicase of the DEAD-box protein family%3B mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs%3B protein abundance increases in response to DNA replication stress%3B DBP1 has a paralog%2C DED1%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL119C_mRNA	DEAD	PF00270.29	2.8e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL119C_mRNA	-	1854	-	YPL119C_mRNA	617 (aa)	-	P24784

Gene Model

Click here to download YPL119C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL119C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YPL119C	DBP1	58	54.545	YLR276C	-	60	54.545
YPL119C	DBP1	67	36.406	YHR065C	-	79	36.867
YPL119C	DBP1	62	34.937	YHR169W	-	87	34.937
YPL119C	DBP1	68	31.193	YGL171W	-	71	32.057
YPL119C	DBP1	60	33.418	YOR046C	DBP5	78	33.005
YPL119C	DBP1	68	30.952	YKR059W	TIF1	94	31.552
YPL119C	DBP1	59	32.884	YDL084W	-	79	32.884
YPL119C	DBP1	59	34.511	YDR021W	-	87	34.511
YPL119C	DBP1	66	31.702	YDR194C	-	67	30.621
YPL119C	DBP1	58	31.006	YDL160C	-	67	31.006
YPL119C	DBP1	71	43.567	YNL112W	-	97	40.506
YPL119C	DBP1	57	30.602	YBR142W	-	52	30.602
YPL119C	DBP1	70	39.636	YGL078C	-	72	41.814
YPL119C	DBP1	68	30.952	YJL138C	TIF2	94	31.552
YPL119C	DBP1	60	33.777	YMR290C	-	72	33.777
YPL119C	DBP1	96	69.652	YOR204W	DED1	100	67.874
YPL119C	DBP1	80	35.094	YDR243C	-	87	35.094

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL119C	DBP1	68	50.119	ENSG00000152670	DDX4	84	46.371	Homo_sapiens
YPL119C	DBP1	57	50.712	ENSAPOG00000021394	ddx4	86	50.712	Acanthochromis_polyacanthus
YPL119C	DBP1	68	50.356	ENSAMEG00000013960	DDX4	66	46.263	Ailuropoda_melanoleuca
YPL119C	DBP1	64	50.253	ENSACIG00000017623	ddx4	87	53.561	Amphilophus_citrinellus
YPL119C	DBP1	64	50.630	ENSAPEG00000008490	ddx4	96	48.201	Amphiprion_percula
YPL119C	DBP1	62	52.083	ENSATEG00000011704	ddx4	87	54.131	Anabas_testudineus
YPL119C	DBP1	69	49.412	ENSAPLG00000011662	DDX4	93	49.762	Anas_platyrhynchos
YPL119C	DBP1	68	52.619	ENSACAG00000014951	DDX4	69	48.988	Anolis_carolinensis
YPL119C	DBP1	68	50.594	ENSANAG00000029060	DDX4	69	46.626	Aotus_nancymaae
YPL119C	DBP1	74	50.766	ENSACLG00000007422	ddx4	85	45.341	Astatotilapia_calliptera
YPL119C	DBP1	68	52.257	ENSAMXG00000010288	ddx4	72	48.583	Astyanax_mexicanus
YPL119C	DBP1	75	48.195	ENSBTAG00000008871	DDX4	71	46.263	Bos_taurus
YPL119C	DBP1	66	39.627	WBGene00001600	glh-3	59	39.627	Caenorhabditis_elegans
YPL119C	DBP1	71	40.929	WBGene00001598	glh-1	56	40.961	Caenorhabditis_elegans
YPL119C	DBP1	68	50.356	ENSCJAG00000001951	DDX4	84	46.774	Callithrix_jacchus
YPL119C	DBP1	68	50.119	ENSCAFG00000006875	DDX4	57	50.119	Canis_familiaris
YPL119C	DBP1	68	50.119	ENSCAFG00020024295	DDX4	72	46.012	Canis_lupus_dingo
YPL119C	DBP1	73	49.011	ENSCHIG00000015567	DDX4	68	46.263	Capra_hircus
YPL119C	DBP1	78	47.228	ENSTSYG00000011848	DDX4	81	47.059	Carlito_syrichta
YPL119C	DBP1	55	42.566	ENSCPOG00000004327	DDX4	82	33.750	Cavia_porcellus
YPL119C	DBP1	68	50.356	ENSCCAG00000028725	DDX4	68	46.667	Cebus_capucinus
YPL119C	DBP1	68	50.119	ENSCATG00000044303	DDX4	85	45.635	Cercocebus_atys
YPL119C	DBP1	74	47.826	ENSCLAG00000005386	DDX4	69	45.418	Chinchilla_lanigera
YPL119C	DBP1	68	50.119	ENSCSAG00000016336	DDX4	56	50.119	Chlorocebus_sabaeus
YPL119C	DBP1	68	43.026	ENSCHOG00000000200	DDX4	66	40.040	Choloepus_hoffmanni
YPL119C	DBP1	86	45.238	ENSCPBG00000026547	DDX4	89	45.238	Chrysemys_picta_bellii
YPL119C	DBP1	73	51.991	ENSCING00000001412	-	76	51.264	Ciona_intestinalis
YPL119C	DBP1	72	52.222	ENSCSAVG00000004304	-	73	50.317	Ciona_savignyi
YPL119C	DBP1	68	44.893	ENSCANG00000003129	DDX4	82	41.463	Colobus_angolensis_palliatus
YPL119C	DBP1	84	44.972	ENSCGRG00001014961	Ddx4	72	44.933	Cricetulus_griseus_chok1gshd
YPL119C	DBP1	85	44.841	ENSCGRG00000001251	Ddx4	72	44.933	Cricetulus_griseus_crigri
YPL119C	DBP1	73	48.222	ENSCSEG00000006039	ddx4	72	45.759	Cynoglossus_semilaevis
YPL119C	DBP1	74	50.756	ENSDARG00000014373	ddx4	78	46.154	Danio_rerio
YPL119C	DBP1	68	47.281	ENSDNOG00000011658	DDX4	70	43.912	Dasypus_novemcinctus
YPL119C	DBP1	68	49.881	ENSDORG00000012201	Ddx4	68	46.263	Dipodomys_ordii
YPL119C	DBP1	76	45.532	FBgn0283442	vas	63	47.248	Drosophila_melanogaster
YPL119C	DBP1	66	47.045	ENSEBUG00000003290	-	82	47.045	Eptatretus_burgeri
YPL119C	DBP1	81	45.889	ENSEASG00005012143	DDX4	80	45.369	Equus_asinus_asinus
YPL119C	DBP1	68	50.119	ENSECAG00000023616	DDX4	65	50.119	Equus_caballus
YPL119C	DBP1	62	50.000	ENSEEUG00000012462	DDX4	52	50.000	Erinaceus_europaeus
YPL119C	DBP1	78	47.071	ENSELUG00000017328	ddx4	74	47.475	Esox_lucius
YPL119C	DBP1	68	50.356	ENSFCAG00000012560	DDX4	73	50.356	Felis_catus
YPL119C	DBP1	69	49.766	ENSFALG00000010910	DDX4	56	50.000	Ficedula_albicollis
YPL119C	DBP1	80	46.573	ENSFDAG00000003703	DDX4	69	46.215	Fukomys_damarensis
YPL119C	DBP1	73	51.528	ENSFHEG00000019935	ddx4	76	48.875	Fundulus_heteroclitus
YPL119C	DBP1	72	48.198	ENSGALG00000014713	DDX4	63	49.057	Gallus_gallus
YPL119C	DBP1	73	50.554	ENSGAFG00000016509	ddx4	76	46.943	Gambusia_affinis
YPL119C	DBP1	73	50.000	ENSGACG00000015323	ddx4	85	51.790	Gasterosteus_aculeatus
YPL119C	DBP1	68	50.356	ENSGGOG00000002439	DDX4	84	46.573	Gorilla_gorilla
YPL119C	DBP1	79	48.361	ENSHBUG00000001897	ddx4	85	45.161	Haplochromis_burtoni
YPL119C	DBP1	68	44.893	ENSHGLG00000003594	DDX4	67	41.616	Heterocephalus_glaber_female
YPL119C	DBP1	73	49.342	ENSHCOG00000018337	ddx4	82	47.600	Hippocampus_comes
YPL119C	DBP1	68	52.857	ENSIPUG00000001845	ddx4	68	52.857	Ictalurus_punctatus
YPL119C	DBP1	68	50.119	ENSSTOG00000021044	DDX4	68	46.061	Ictidomys_tridecemlineatus
YPL119C	DBP1	70	49.312	ENSJJAG00000015867	Ddx4	68	46.061	Jaculus_jaculus
YPL119C	DBP1	68	52.506	ENSKMAG00000012439	ddx4	65	52.506	Kryptolebias_marmoratus
YPL119C	DBP1	74	49.353	ENSLBEG00000019504	ddx4	75	47.262	Labrus_bergylta
YPL119C	DBP1	68	50.356	ENSLOCG00000010887	ddx4	86	50.356	Lepisosteus_oculatus
YPL119C	DBP1	68	49.881	ENSLAFG00000005900	DDX4	68	45.859	Loxodonta_africana
YPL119C	DBP1	68	50.119	ENSMFAG00000040186	DDX4	85	45.635	Macaca_fascicularis
YPL119C	DBP1	68	50.119	ENSMMUG00000017386	DDX4	85	45.635	Macaca_mulatta
YPL119C	DBP1	68	50.119	ENSMNEG00000033343	DDX4	85	45.635	Macaca_nemestrina
YPL119C	DBP1	68	45.606	ENSMLEG00000038233	DDX4	88	41.865	Mandrillus_leucophaeus
YPL119C	DBP1	57	52.422	ENSMAMG00000003574	ddx4	88	52.422	Mastacembelus_armatus
YPL119C	DBP1	74	50.766	ENSMZEG00005019116	ddx4	85	45.504	Maylandia_zebra
YPL119C	DBP1	68	44.418	ENSMAUG00000019873	Ddx4	74	40.421	Mesocricetus_auratus
YPL119C	DBP1	67	39.183	ENSMICG00000028132	-	70	38.673	Microcebus_murinus
YPL119C	DBP1	70	50.000	ENSMICG00000008994	-	84	47.059	Microcebus_murinus
YPL119C	DBP1	85	44.528	ENSMOCG00000013250	Ddx4	72	44.551	Microtus_ochrogaster
YPL119C	DBP1	76	50.106	ENSMMOG00000004689	ddx4	76	51.474	Mola_mola
YPL119C	DBP1	68	49.406	ENSMODG00000019511	DDX4	66	46.667	Monodelphis_domestica
YPL119C	DBP1	86	44.917	MGP_CAROLIEiJ_G0018893	Ddx4	71	45.614	Mus_caroli
YPL119C	DBP1	85	44.841	ENSMUSG00000021758	Ddx4	71	45.419	Mus_musculus
YPL119C	DBP1	83	45.437	MGP_PahariEiJ_G0015964	Ddx4	71	45.331	Mus_pahari
YPL119C	DBP1	85	45.028	MGP_SPRETEiJ_G0019772	Ddx4	71	45.419	Mus_spretus
YPL119C	DBP1	68	50.356	ENSMPUG00000007596	DDX4	66	46.263	Mustela_putorius_furo
YPL119C	DBP1	77	45.530	ENSMLUG00000001189	DDX4	66	45.070	Myotis_lucifugus
YPL119C	DBP1	68	50.119	ENSNGAG00000013259	Ddx4	66	45.749	Nannospalax_galili
YPL119C	DBP1	74	49.677	ENSNBRG00000014442	ddx4	86	49.284	Neolamprologus_brichardi
YPL119C	DBP1	78	47.251	ENSNLEG00000001662	DDX4	85	46.351	Nomascus_leucogenys
YPL119C	DBP1	51	48.333	ENSMEUG00000007757	DDX4	55	42.045	Notamacropus_eugenii
YPL119C	DBP1	68	49.644	ENSODEG00000016951	-	61	49.644	Octodon_degus
YPL119C	DBP1	68	48.931	ENSODEG00000003839	-	63	48.931	Octodon_degus
YPL119C	DBP1	68	52.267	ENSONIG00000012063	ddx4	86	52.267	Oreochromis_niloticus
YPL119C	DBP1	61	46.277	ENSOANG00000004888	-	89	47.191	Ornithorhynchus_anatinus
YPL119C	DBP1	68	49.644	ENSOCUG00000008597	DDX4	65	45.808	Oryctolagus_cuniculus
YPL119C	DBP1	73	51.214	ENSORLG00000020672	ddx4	76	48.671	Oryzias_latipes
YPL119C	DBP1	73	51.214	ENSORLG00020014206	ddx4	78	48.466	Oryzias_latipes_hni
YPL119C	DBP1	73	51.441	ENSORLG00015016600	ddx4	78	48.671	Oryzias_latipes_hsok
YPL119C	DBP1	75	49.138	ENSOMEG00000010651	ddx4	81	47.276	Oryzias_melastigma
YPL119C	DBP1	68	50.356	ENSOGAG00000007588	DDX4	65	46.421	Otolemur_garnettii
YPL119C	DBP1	68	50.119	ENSOARG00000007644	DDX4	66	46.263	Ovis_aries
YPL119C	DBP1	68	50.119	ENSPPAG00000033915	DDX4	84	46.371	Pan_paniscus
YPL119C	DBP1	68	50.119	ENSPPRG00000011417	DDX4	70	46.061	Panthera_pardus
YPL119C	DBP1	68	50.119	ENSPTIG00000007748	DDX4	71	47.506	Panthera_tigris_altaica
YPL119C	DBP1	68	50.119	ENSPTRG00000016884	DDX4	84	46.371	Pan_troglodytes
YPL119C	DBP1	78	47.143	ENSPANG00000010945	DDX4	84	46.573	Papio_anubis
YPL119C	DBP1	86	43.297	ENSPSIG00000017179	DDX4	82	44.294	Pelodiscus_sinensis
YPL119C	DBP1	62	45.455	ENSPMGG00000015642	ddx4	87	47.578	Periophthalmus_magnuspinnatus
YPL119C	DBP1	83	45.720	ENSPEMG00000010086	Ddx4	71	45.614	Peromyscus_maniculatus_bairdii
YPL119C	DBP1	80	45.238	ENSPCIG00000024758	DDX4	73	45.875	Phascolarctos_cinereus
YPL119C	DBP1	73	50.776	ENSPFOG00000018842	ddx4	69	50.885	Poecilia_formosa
YPL119C	DBP1	73	50.776	ENSPLAG00000020726	ddx4	69	50.885	Poecilia_latipinna
YPL119C	DBP1	73	50.776	ENSPMEG00000002976	ddx4	71	50.885	Poecilia_mexicana
YPL119C	DBP1	73	50.776	ENSPREG00000017840	ddx4	79	47.140	Poecilia_reticulata
YPL119C	DBP1	68	50.356	ENSPPYG00000015472	DDX4	64	46.667	Pongo_abelii
YPL119C	DBP1	62	51.042	ENSPCAG00000002675	DDX4	53	51.042	Procavia_capensis
YPL119C	DBP1	68	49.881	ENSPVAG00000002448	DDX4	69	45.142	Pteropus_vampyrus
YPL119C	DBP1	74	50.766	ENSPNYG00000022212	ddx4	71	53.237	Pundamilia_nyererei
YPL119C	DBP1	65	52.956	ENSPNAG00000003686	ddx4	74	48.434	Pygocentrus_nattereri
YPL119C	DBP1	84	45.229	ENSRNOG00000026686	Ddx4	72	45.124	Rattus_norvegicus
YPL119C	DBP1	68	50.356	ENSRBIG00000028795	DDX4	85	45.833	Rhinopithecus_bieti
YPL119C	DBP1	78	47.239	ENSRROG00000045392	DDX4	85	45.924	Rhinopithecus_roxellana
YPL119C	DBP1	68	50.356	ENSSBOG00000035231	DDX4	69	46.421	Saimiri_boliviensis_boliviensis
YPL119C	DBP1	80	45.040	ENSSHAG00000009132	DDX4	67	45.984	Sarcophilus_harrisii
YPL119C	DBP1	71	50.000	ENSSFOG00015006531	ddx4	64	51.905	Scleropages_formosus
YPL119C	DBP1	72	51.126	ENSSMAG00000009800	ddx4	79	47.471	Scophthalmus_maximus
YPL119C	DBP1	68	52.857	ENSSDUG00000022015	ddx4	76	49.084	Seriola_dumerili
YPL119C	DBP1	57	53.693	ENSSLDG00000015312	ddx4	88	53.693	Seriola_lalandi_dorsalis
YPL119C	DBP1	60	50.670	ENSSARG00000004206	DDX4	51	50.670	Sorex_araneus
YPL119C	DBP1	80	46.154	ENSSPUG00000007260	DDX4	71	50.119	Sphenodon_punctatus
YPL119C	DBP1	64	51.768	ENSSPAG00000014307	ddx4	96	48.675	Stegastes_partitus
YPL119C	DBP1	68	49.881	ENSSSCG00000016913	DDX4	66	45.859	Sus_scrofa
YPL119C	DBP1	68	49.409	ENSTGUG00000002548	DDX4	95	49.409	Taeniopygia_guttata
YPL119C	DBP1	69	45.775	ENSTNIG00000014474	ddx4	86	43.173	Tetraodon_nigroviridis
YPL119C	DBP1	68	49.881	ENSTTRG00000009316	DDX4	67	45.783	Tursiops_truncatus
YPL119C	DBP1	68	50.119	ENSUAMG00000023028	DDX4	77	45.614	Ursus_americanus
YPL119C	DBP1	68	50.119	ENSUMAG00000009291	DDX4	77	45.614	Ursus_maritimus
YPL119C	DBP1	68	50.594	ENSVPAG00000009491	DDX4	67	46.154	Vicugna_pacos
YPL119C	DBP1	68	50.356	ENSVVUG00000021369	DDX4	69	45.547	Vulpes_vulpes
YPL119C	DBP1	68	50.594	ENSXETG00000030832	DDX4	76	46.108	Xenopus_tropicalis
YPL119C	DBP1	73	50.998	ENSXMAG00000009677	ddx4	87	45.636	Xiphophorus_maculatus