EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPL160W (Gene tree)
Gene ID: -
Gene Symbol: CDC60
Alias: -
Full Name: Cytosolic leucyl tRNA synthetase%3B ligates leucine to the appropriate tRNA%3B human homolog LARS can complement yeast temperature-sensitive mutant at restrictive temperature
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3273 bases
Position: chrXVI:246990-250262
Accession: S000006081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL160W_mRNA	tRNA-synt_1g	PF09334.11	1.3e-16	1	1
YPL160W_mRNA	Anticodon_1	PF08264.13	2.2e-13	1	1
YPL160W_mRNA	tRNA-synt_1	PF00133.22	2e-42	1	2
YPL160W_mRNA	tRNA-synt_1	PF00133.22	2e-42	2	2
YPL160W_mRNA	tRNA-synt_1e	PF01406.19	2.7e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL160W_mRNA	-	3273	-	YPL160W_mRNA	1090 (aa)	-	P26637

Gene Model

Click here to download YPL160W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL160W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL160W	CDC60	99	43.841	ENSG00000133706	LARS	90	45.577	Homo_sapiens
YPL160W	CDC60	99	46.014	ENSAPOG00000010585	larsb	95	45.875	Acanthochromis_polyacanthus
YPL160W	CDC60	93	46.731	ENSAMEG00000017584	LARS	86	46.763	Ailuropoda_melanoleuca
YPL160W	CDC60	99	45.041	ENSACIG00000014026	larsb	90	44.828	Amphilophus_citrinellus
YPL160W	CDC60	99	45.479	ENSAOCG00000016931	larsb	90	45.479	Amphiprion_ocellaris
YPL160W	CDC60	99	45.479	ENSAPEG00000017720	larsb	90	45.479	Amphiprion_percula
YPL160W	CDC60	99	42.430	ENSATEG00000010441	larsb	89	43.297	Anabas_testudineus
YPL160W	CDC60	89	48.321	ENSAPLG00000008145	LARS	86	48.321	Anas_platyrhynchos
YPL160W	CDC60	99	45.322	ENSACAG00000013916	LARS	90	45.059	Anolis_carolinensis
YPL160W	CDC60	93	42.843	ENSANAG00000014375	LARS	85	43.592	Aotus_nancymaae
YPL160W	CDC60	99	45.966	ENSACLG00000010881	larsb	90	45.750	Astatotilapia_calliptera
YPL160W	CDC60	99	46.286	ENSAMXG00000019979	larsb	90	46.056	Astyanax_mexicanus
YPL160W	CDC60	93	46.635	ENSBTAG00000006765	LARS	86	46.763	Bos_taurus
YPL160W	CDC60	91	45.428	WBGene00003073	lars-1	84	45.428	Caenorhabditis_elegans
YPL160W	CDC60	99	44.464	ENSCJAG00000021314	LARS	90	45.962	Callithrix_jacchus
YPL160W	CDC60	93	45.733	ENSCAFG00000006431	LARS	86	47.002	Canis_familiaris
YPL160W	CDC60	93	45.733	ENSCAFG00020025009	LARS	86	47.150	Canis_lupus_dingo
YPL160W	CDC60	93	46.827	ENSCHIG00000014949	LARS	86	46.957	Capra_hircus
YPL160W	CDC60	99	45.009	ENSTSYG00000001253	LARS	90	44.295	Carlito_syrichta
YPL160W	CDC60	86	39.454	ENSCAPG00000015676	LARS	83	39.979	Cavia_aperea
YPL160W	CDC60	99	44.344	ENSCPOG00000012329	LARS	90	44.959	Cavia_porcellus
YPL160W	CDC60	93	46.124	ENSCCAG00000020789	LARS	86	46.905	Cebus_capucinus
YPL160W	CDC60	95	44.782	ENSCATG00000033463	LARS	90	45.769	Cercocebus_atys
YPL160W	CDC60	99	44.977	ENSCLAG00000011193	LARS	90	45.595	Chinchilla_lanigera
YPL160W	CDC60	99	44.112	ENSCSAG00000012280	LARS	88	45.000	Chlorocebus_sabaeus
YPL160W	CDC60	80	44.470	ENSCHOG00000009309	LARS	74	44.357	Choloepus_hoffmanni
YPL160W	CDC60	93	47.246	ENSCPBG00000008415	LARS	91	48.023	Chrysemys_picta_bellii
YPL160W	CDC60	99	43.625	ENSCING00000008535	-	89	43.403	Ciona_intestinalis
YPL160W	CDC60	99	43.631	ENSCSAVG00000009040	-	99	46.782	Ciona_savignyi
YPL160W	CDC60	99	43.841	ENSCANG00000031137	LARS	90	44.727	Colobus_angolensis_palliatus
YPL160W	CDC60	85	45.011	ENSCGRG00001004647	Lars	85	45.011	Cricetulus_griseus_chok1gshd
YPL160W	CDC60	93	45.455	ENSCGRG00000007284	Lars	86	45.455	Cricetulus_griseus_crigri
YPL160W	CDC60	99	46.370	ENSCSEG00000014984	larsb	90	46.733	Cynoglossus_semilaevis
YPL160W	CDC60	99	45.826	ENSCVAG00000014685	larsb	90	45.826	Cyprinodon_variegatus
YPL160W	CDC60	64	44.242	ENSDARG00000019280	larsb	86	44.242	Danio_rerio
YPL160W	CDC60	89	47.624	ENSDNOG00000017963	LARS	86	46.293	Dasypus_novemcinctus
YPL160W	CDC60	99	43.167	ENSDORG00000014913	Lars	90	43.077	Dipodomys_ordii
YPL160W	CDC60	93	44.669	FBgn0284253	LeuRS	86	44.295	Drosophila_melanogaster
YPL160W	CDC60	88	38.815	ENSETEG00000003145	LARS	86	38.713	Echinops_telfairi
YPL160W	CDC60	99	41.432	ENSEBUG00000014985	larsb	95	40.979	Eptatretus_burgeri
YPL160W	CDC60	93	46.968	ENSEASG00005020569	LARS	86	47.099	Equus_asinus_asinus
YPL160W	CDC60	93	46.872	ENSECAG00000008963	LARS	91	47.002	Equus_caballus
YPL160W	CDC60	70	56.596	ENSEEUG00000014854	LARS	64	56.596	Erinaceus_europaeus
YPL160W	CDC60	99	45.091	ENSELUG00000023311	larsb	90	45.091	Esox_lucius
YPL160W	CDC60	99	45.562	ENSFCAG00000008715	LARS	95	47.099	Felis_catus
YPL160W	CDC60	93	47.399	ENSFALG00000003209	LARS	80	47.725	Ficedula_albicollis
YPL160W	CDC60	93	46.518	ENSFDAG00000020764	LARS	86	47.099	Fukomys_damarensis
YPL160W	CDC60	89	49.524	ENSFHEG00000010437	larsb	89	49.524	Fundulus_heteroclitus
YPL160W	CDC60	99	44.374	ENSGMOG00000013645	larsb	90	44.465	Gadus_morhua
YPL160W	CDC60	93	47.404	ENSGALG00000007494	LARS	86	47.834	Gallus_gallus
YPL160W	CDC60	99	45.882	ENSGAFG00000005029	larsb	90	45.882	Gambusia_affinis
YPL160W	CDC60	99	44.545	ENSGACG00000020720	larsb	90	45.091	Gasterosteus_aculeatus
YPL160W	CDC60	93	47.246	ENSGAGG00000002353	LARS	86	47.725	Gopherus_agassizii
YPL160W	CDC60	99	45.000	ENSGGOG00000004103	LARS	90	45.000	Gorilla_gorilla
YPL160W	CDC60	99	45.966	ENSHBUG00000003051	larsb	97	45.750	Haplochromis_burtoni
YPL160W	CDC60	93	46.339	ENSHGLG00000006937	LARS	86	47.002	Heterocephalus_glaber_female
YPL160W	CDC60	93	46.339	ENSHGLG00100002801	LARS	86	47.002	Heterocephalus_glaber_male
YPL160W	CDC60	99	45.298	ENSHCOG00000003651	larsb	90	45.298	Hippocampus_comes
YPL160W	CDC60	99	46.147	ENSIPUG00000010756	lars	92	46.105	Ictalurus_punctatus
YPL160W	CDC60	99	45.479	ENSSTOG00000002356	LARS	90	45.504	Ictidomys_tridecemlineatus
YPL160W	CDC60	93	46.968	ENSJJAG00000015265	Lars	86	47.099	Jaculus_jaculus
YPL160W	CDC60	99	45.348	ENSKMAG00000009903	larsb	90	45.471	Kryptolebias_marmoratus
YPL160W	CDC60	99	45.446	ENSLBEG00000025237	larsb	90	45.570	Labrus_bergylta
YPL160W	CDC60	99	44.787	ENSLACG00000009321	LARS	90	45.380	Latimeria_chalumnae
YPL160W	CDC60	99	45.735	ENSLOCG00000010442	larsb	90	45.191	Lepisosteus_oculatus
YPL160W	CDC60	93	46.827	ENSLAFG00000000318	LARS	86	46.860	Loxodonta_africana
YPL160W	CDC60	99	44.112	ENSMFAG00000038685	LARS	90	45.000	Macaca_fascicularis
YPL160W	CDC60	99	44.112	ENSMMUG00000029787	LARS	90	45.000	Macaca_mulatta
YPL160W	CDC60	99	42.922	ENSMNEG00000044014	LARS	90	43.807	Macaca_nemestrina
YPL160W	CDC60	99	45.000	ENSMLEG00000037563	LARS	90	44.909	Mandrillus_leucophaeus
YPL160W	CDC60	99	44.968	ENSMAMG00000021385	larsb	90	45.249	Mastacembelus_armatus
YPL160W	CDC60	99	45.966	ENSMZEG00005002662	larsb	90	45.750	Maylandia_zebra
YPL160W	CDC60	89	48.024	ENSMGAG00000009388	LARS	86	48.534	Meleagris_gallopavo
YPL160W	CDC60	89	48.305	ENSMAUG00000003063	Lars	89	39.367	Mesocricetus_auratus
YPL160W	CDC60	93	37.416	ENSMICG00000035435	-	86	36.346	Microcebus_murinus
YPL160W	CDC60	93	46.198	ENSMICG00000035589	-	86	46.325	Microcebus_murinus
YPL160W	CDC60	99	45.273	ENSMOCG00000002092	Lars	91	45.273	Microtus_ochrogaster
YPL160W	CDC60	99	43.699	ENSMMOG00000013802	larsb	90	44.565	Mola_mola
YPL160W	CDC60	99	41.230	ENSMODG00000010231	LARS	90	41.102	Monodelphis_domestica
YPL160W	CDC60	99	44.495	ENSMALG00000018444	larsb	90	44.495	Monopterus_albus
YPL160W	CDC60	93	47.002	MGP_CAROLIEiJ_G0022225	Lars	86	47.002	Mus_caroli
YPL160W	CDC60	93	46.712	ENSMUSG00000024493	Lars	86	46.712	Mus_musculus
YPL160W	CDC60	93	47.195	MGP_PahariEiJ_G0018958	Lars	86	47.195	Mus_pahari
YPL160W	CDC60	93	46.712	MGP_SPRETEiJ_G0023135	Lars	86	46.712	Mus_spretus
YPL160W	CDC60	99	44.335	ENSMPUG00000007844	LARS	90	44.959	Mustela_putorius_furo
YPL160W	CDC60	93	46.139	ENSMLUG00000001125	LARS	86	46.325	Myotis_lucifugus
YPL160W	CDC60	99	43.931	ENSNGAG00000011596	Lars	90	44.384	Nannospalax_galili
YPL160W	CDC60	99	46.007	ENSNBRG00000005764	larsb	90	45.792	Neolamprologus_brichardi
YPL160W	CDC60	99	43.659	ENSNLEG00000009816	LARS	90	44.455	Nomascus_leucogenys
YPL160W	CDC60	64	56.316	ENSOPRG00000003076	LARS	63	49.239	Ochotona_princeps
YPL160W	CDC60	93	44.851	ENSODEG00000004882	LARS	86	44.971	Octodon_degus
YPL160W	CDC60	99	46.007	ENSONIG00000008493	larsb	90	45.792	Oreochromis_niloticus
YPL160W	CDC60	99	44.565	ENSOANG00000005755	LARS	90	44.475	Ornithorhynchus_anatinus
YPL160W	CDC60	93	46.583	ENSOCUG00000015684	LARS	86	46.712	Oryctolagus_cuniculus
YPL160W	CDC60	99	45.389	ENSORLG00000001622	larsb	90	45.826	Oryzias_latipes
YPL160W	CDC60	99	45.389	ENSORLG00020019950	larsb	90	45.826	Oryzias_latipes_hni
YPL160W	CDC60	99	45.298	ENSORLG00015003895	larsb	90	45.735	Oryzias_latipes_hsok
YPL160W	CDC60	99	45.652	ENSOMEG00000005677	larsb	91	45.652	Oryzias_melastigma
YPL160W	CDC60	89	45.775	ENSOGAG00000008750	LARS	86	45.674	Otolemur_garnettii
YPL160W	CDC60	93	46.487	ENSOARG00000015911	-	86	46.615	Ovis_aries
YPL160W	CDC60	93	46.538	ENSOARG00000002454	-	86	46.667	Ovis_aries
YPL160W	CDC60	99	43.931	ENSPPAG00000027964	LARS	89	53.571	Pan_paniscus
YPL160W	CDC60	99	45.389	ENSPPRG00000023492	LARS	90	45.322	Panthera_pardus
YPL160W	CDC60	99	45.298	ENSPTIG00000013110	LARS	90	45.232	Panthera_tigris_altaica
YPL160W	CDC60	99	43.931	ENSPTRG00000017372	LARS	90	44.818	Pan_troglodytes
YPL160W	CDC60	99	45.091	ENSPANG00000002663	LARS	90	45.000	Papio_anubis
YPL160W	CDC60	99	45.158	ENSPKIG00000006650	larsb	90	44.173	Paramormyrops_kingsleyae
YPL160W	CDC60	93	47.688	ENSPSIG00000015641	LARS	86	47.531	Pelodiscus_sinensis
YPL160W	CDC60	64	43.944	ENSPMGG00000019556	LARS	86	43.944	Periophthalmus_magnuspinnatus
YPL160W	CDC60	99	42.727	ENSPEMG00000010933	Lars	90	42.727	Peromyscus_maniculatus_bairdii
YPL160W	CDC60	99	44.253	ENSPCIG00000030572	LARS	90	44.104	Phascolarctos_cinereus
YPL160W	CDC60	99	45.520	ENSPFOG00000002361	larsb	90	45.520	Poecilia_formosa
YPL160W	CDC60	99	45.520	ENSPLAG00000016550	larsb	90	45.520	Poecilia_latipinna
YPL160W	CDC60	99	45.520	ENSPMEG00000018422	larsb	90	45.520	Poecilia_mexicana
YPL160W	CDC60	99	45.430	ENSPREG00000005668	larsb	90	45.826	Poecilia_reticulata
YPL160W	CDC60	99	43.396	ENSPPYG00000015908	LARS	87	43.486	Pongo_abelii
YPL160W	CDC60	84	38.280	ENSPCAG00000005621	LARS	87	38.197	Procavia_capensis
YPL160W	CDC60	93	45.323	ENSPCOG00000019325	LARS	86	45.446	Propithecus_coquereli
YPL160W	CDC60	95	41.920	ENSPVAG00000011237	LARS	90	41.415	Pteropus_vampyrus
YPL160W	CDC60	99	45.875	ENSPNYG00000015254	larsb	90	45.660	Pundamilia_nyererei
YPL160W	CDC60	99	45.471	ENSPNAG00000027191	larsb	90	44.977	Pygocentrus_nattereri
YPL160W	CDC60	99	44.777	ENSRNOG00000018304	Lars	90	44.777	Rattus_norvegicus
YPL160W	CDC60	99	42.754	ENSRBIG00000043198	LARS	96	43.636	Rhinopithecus_bieti
YPL160W	CDC60	86	46.811	ENSSBOG00000026661	LARS	86	47.808	Saimiri_boliviensis_boliviensis
YPL160W	CDC60	99	45.109	ENSSHAG00000006084	LARS	90	43.975	Sarcophilus_harrisii
YPL160W	CDC60	99	45.249	ENSSFOG00015018117	larsb	84	45.150	Scleropages_formosus
YPL160W	CDC60	93	47.161	ENSSMAG00000004078	larsb	95	46.974	Scophthalmus_maximus
YPL160W	CDC60	99	45.750	ENSSDUG00000021142	larsb	90	45.750	Seriola_dumerili
YPL160W	CDC60	99	45.750	ENSSLDG00000007054	larsb	90	45.750	Seriola_lalandi_dorsalis
YPL160W	CDC60	67	48.305	ENSSARG00000013481	LARS	62	48.305	Sorex_araneus
YPL160W	CDC60	93	46.821	ENSSPUG00000013805	LARS	86	47.793	Sphenodon_punctatus
YPL160W	CDC60	99	45.389	ENSSPAG00000012124	larsb	90	45.389	Stegastes_partitus
YPL160W	CDC60	93	45.279	ENSSSCG00000014411	LARS	86	45.068	Sus_scrofa
YPL160W	CDC60	93	46.917	ENSTGUG00000000092	-	86	47.445	Taeniopygia_guttata
YPL160W	CDC60	99	45.430	ENSTRUG00000005358	larsb	90	45.217	Takifugu_rubripes
YPL160W	CDC60	99	42.948	ENSTNIG00000018214	larsb	90	43.400	Tetraodon_nigroviridis
YPL160W	CDC60	80	58.261	ENSTBEG00000003757	LARS	78	58.261	Tupaia_belangeri
YPL160W	CDC60	95	46.023	ENSTTRG00000016712	LARS	87	46.147	Tursiops_truncatus
YPL160W	CDC60	93	46.776	ENSUAMG00000019907	LARS	91	46.809	Ursus_americanus
YPL160W	CDC60	93	46.776	ENSUMAG00000010585	LARS	86	46.809	Ursus_maritimus
YPL160W	CDC60	84	46.014	ENSVPAG00000000557	LARS	77	46.014	Vicugna_pacos
YPL160W	CDC60	93	46.917	ENSVVUG00000021124	LARS	86	47.099	Vulpes_vulpes
YPL160W	CDC60	93	47.201	ENSXETG00000002320	lars	86	47.297	Xenopus_tropicalis
YPL160W	CDC60	99	45.520	ENSXMAG00000001454	larsb	90	45.520	Xiphophorus_maculatus