EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPL178W (Gene tree)
Gene ID: -
Gene Symbol: CBC2
Alias: CBP20|MUD13|SAE1
Full Name: Small subunit of the heterodimeric cap binding complex with Sto1p%3B interacts with Npl3p%2C possibly to package mRNA for export from the nucleus%3B may have a role in telomere maintenance%3B contains an RNA-binding motif
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 627 bases
Position: chrXVI:212158-212784
Accession: S000006099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL178W_mRNA	RRM_1	PF00076.22	2.6e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL178W_mRNA	-	627	-	YPL178W_mRNA	208 (aa)	-	Q08920

Gene Model

Click here to download YPL178W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL178W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL178W	CBC2	54	55.752	ENSG00000170935	NCBP2L	73	55.752	Homo_sapiens
YPL178W	CBC2	63	58.333	ENSG00000114503	NCBP2	95	58.333	Homo_sapiens
YPL178W	CBC2	54	57.522	ENSAPOG00000016180	ncbp2	69	57.522	Acanthochromis_polyacanthus
YPL178W	CBC2	56	46.610	ENSAMEG00000018655	NCBP2L	77	46.610	Ailuropoda_melanoleuca
YPL178W	CBC2	54	62.832	ENSAMEG00000003664	-	72	62.832	Ailuropoda_melanoleuca
YPL178W	CBC2	54	58.407	ENSACIG00000010008	ncbp2	69	58.407	Amphilophus_citrinellus
YPL178W	CBC2	54	57.522	ENSAOCG00000002198	ncbp2	61	57.522	Amphiprion_ocellaris
YPL178W	CBC2	54	57.522	ENSAPEG00000013395	ncbp2	69	57.522	Amphiprion_percula
YPL178W	CBC2	54	58.407	ENSATEG00000021649	ncbp2	69	58.407	Anabas_testudineus
YPL178W	CBC2	54	61.062	ENSAPLG00000014522	-	86	61.062	Anas_platyrhynchos
YPL178W	CBC2	54	60.714	ENSAPLG00000013779	-	80	60.714	Anas_platyrhynchos
YPL178W	CBC2	65	56.296	ENSACAG00000015128	-	73	56.296	Anolis_carolinensis
YPL178W	CBC2	63	58.333	ENSANAG00000018285	NCBP2	95	58.333	Aotus_nancymaae
YPL178W	CBC2	54	58.407	ENSACLG00000026775	ncbp2	69	58.407	Astatotilapia_calliptera
YPL178W	CBC2	54	57.522	ENSAMXG00000041812	ncbp2	67	57.522	Astyanax_mexicanus
YPL178W	CBC2	54	62.832	ENSBTAG00000008873	NCBP2	72	62.832	Bos_taurus
YPL178W	CBC2	71	47.297	WBGene00009141	ncbp-2	97	53.409	Caenorhabditis_elegans
YPL178W	CBC2	63	58.333	ENSCJAG00000039693	NCBP2	95	58.333	Callithrix_jacchus
YPL178W	CBC2	54	58.036	ENSCAFG00000017990	NCBP2L	69	58.036	Canis_familiaris
YPL178W	CBC2	54	62.832	ENSCAFG00000013100	NCBP2	72	62.832	Canis_familiaris
YPL178W	CBC2	54	58.036	ENSCAFG00020006690	NCBP2L	70	58.036	Canis_lupus_dingo
YPL178W	CBC2	54	62.832	ENSCAFG00020003010	-	72	62.832	Canis_lupus_dingo
YPL178W	CBC2	65	50.000	ENSCHIG00000020051	NCBP2L	73	54.386	Capra_hircus
YPL178W	CBC2	54	62.832	ENSCHIG00000025737	-	72	62.832	Capra_hircus
YPL178W	CBC2	54	62.832	ENSTSYG00000014263	-	82	62.832	Carlito_syrichta
YPL178W	CBC2	54	61.947	ENSCPOG00000002976	NCBP2	72	61.947	Cavia_porcellus
YPL178W	CBC2	63	58.333	ENSCCAG00000025053	NCBP2	95	58.333	Cebus_capucinus
YPL178W	CBC2	54	62.832	ENSCATG00000030004	NCBP2	82	62.832	Cercocebus_atys
YPL178W	CBC2	54	61.947	ENSCLAG00000012808	NCBP2	72	61.947	Chinchilla_lanigera
YPL178W	CBC2	54	54.867	ENSCSAG00000000310	NCBP2L	73	54.867	Chlorocebus_sabaeus
YPL178W	CBC2	54	61.947	ENSCHOG00000005967	-	72	61.947	Choloepus_hoffmanni
YPL178W	CBC2	54	61.947	ENSCPBG00000004735	-	72	61.947	Chrysemys_picta_bellii
YPL178W	CBC2	61	58.268	ENSCPBG00000016711	-	74	58.268	Chrysemys_picta_bellii
YPL178W	CBC2	58	60.331	ENSCING00000018317	-	65	60.331	Ciona_intestinalis
YPL178W	CBC2	58	60.331	ENSCSAVG00000005823	-	65	60.331	Ciona_savignyi
YPL178W	CBC2	63	58.333	ENSCANG00000039404	NCBP2	95	58.333	Colobus_angolensis_palliatus
YPL178W	CBC2	54	62.832	ENSCGRG00001017056	Ncbp2	72	62.832	Cricetulus_griseus_chok1gshd
YPL178W	CBC2	54	62.832	ENSCGRG00000014761	Ncbp2	72	62.832	Cricetulus_griseus_crigri
YPL178W	CBC2	54	57.522	ENSCSEG00000019322	ncbp2	69	57.522	Cynoglossus_semilaevis
YPL178W	CBC2	54	59.292	ENSCVAG00000012766	ncbp2	69	59.292	Cyprinodon_variegatus
YPL178W	CBC2	54	58.407	ENSDARG00000014898	ncbp2	73	58.407	Danio_rerio
YPL178W	CBC2	54	53.097	ENSDNOG00000004831	NCBP2L	72	53.097	Dasypus_novemcinctus
YPL178W	CBC2	61	58.594	ENSDNOG00000047711	NCBP2	91	58.594	Dasypus_novemcinctus
YPL178W	CBC2	54	62.832	ENSDORG00000028653	Ncbp2	72	62.832	Dipodomys_ordii
YPL178W	CBC2	57	55.462	FBgn0022943	Cbp20	77	55.462	Drosophila_melanogaster
YPL178W	CBC2	54	48.673	ENSETEG00000006407	-	86	48.673	Echinops_telfairi
YPL178W	CBC2	54	49.138	ENSEASG00005019772	NCBP2L	68	51.724	Equus_asinus_asinus
YPL178W	CBC2	54	62.832	ENSEASG00005006719	NCBP2	72	62.832	Equus_asinus_asinus
YPL178W	CBC2	54	62.832	ENSECAG00000016153	NCBP2	72	62.832	Equus_caballus
YPL178W	CBC2	54	50.000	ENSECAG00000003478	NCBP2L	77	52.586	Equus_caballus
YPL178W	CBC2	56	58.120	ENSELUG00000018927	ncbp2	75	58.120	Esox_lucius
YPL178W	CBC2	54	62.832	ENSFCAG00000029865	NCBP2	82	62.832	Felis_catus
YPL178W	CBC2	54	60.177	ENSFALG00000007099	-	72	60.177	Ficedula_albicollis
YPL178W	CBC2	59	59.200	ENSFALG00000011928	-	89	59.200	Ficedula_albicollis
YPL178W	CBC2	54	61.947	ENSFDAG00000010403	NCBP2	72	61.947	Fukomys_damarensis
YPL178W	CBC2	54	58.407	ENSFHEG00000002308	ncbp2	69	58.407	Fundulus_heteroclitus
YPL178W	CBC2	61	53.543	ENSGMOG00000018657	ncbp2	77	53.543	Gadus_morhua
YPL178W	CBC2	54	60.714	ENSGALG00000005753	-	67	60.714	Gallus_gallus
YPL178W	CBC2	54	61.062	ENSGALG00000006843	NCBP2	72	61.062	Gallus_gallus
YPL178W	CBC2	54	59.292	ENSGAFG00000010213	ncbp2	69	59.292	Gambusia_affinis
YPL178W	CBC2	54	54.867	ENSGACG00000006238	ncbp2	68	54.867	Gasterosteus_aculeatus
YPL178W	CBC2	61	58.268	ENSGAGG00000015966	-	74	58.268	Gopherus_agassizii
YPL178W	CBC2	54	61.947	ENSGAGG00000025839	-	72	61.947	Gopherus_agassizii
YPL178W	CBC2	63	58.333	ENSGGOG00000042244	NCBP2	95	58.333	Gorilla_gorilla
YPL178W	CBC2	54	53.982	ENSGGOG00000014581	NCBP2L	73	53.982	Gorilla_gorilla
YPL178W	CBC2	54	58.407	ENSHBUG00000003914	ncbp2	59	58.407	Haplochromis_burtoni
YPL178W	CBC2	53	54.054	ENSHGLG00000003263	-	68	54.054	Heterocephalus_glaber_female
YPL178W	CBC2	54	61.947	ENSHGLG00000019489	NCBP2	72	61.947	Heterocephalus_glaber_female
YPL178W	CBC2	54	61.947	ENSHGLG00100017688	NCBP2	72	61.947	Heterocephalus_glaber_male
YPL178W	CBC2	54	45.614	ENSHGLG00100018377	-	68	45.614	Heterocephalus_glaber_male
YPL178W	CBC2	54	58.036	ENSHCOG00000000679	ncbp2	70	58.036	Hippocampus_comes
YPL178W	CBC2	60	59.524	ENSSTOG00000001584	NCBP2	77	59.524	Ictidomys_tridecemlineatus
YPL178W	CBC2	54	62.832	ENSJJAG00000013908	Ncbp2	70	62.832	Jaculus_jaculus
YPL178W	CBC2	54	58.407	ENSKMAG00000009686	ncbp2	69	58.407	Kryptolebias_marmoratus
YPL178W	CBC2	54	58.407	ENSLBEG00000020441	ncbp2	69	58.407	Labrus_bergylta
YPL178W	CBC2	54	59.821	ENSLACG00000017474	ncbp2	68	59.821	Latimeria_chalumnae
YPL178W	CBC2	54	49.123	ENSLACG00000015184	-	73	49.123	Latimeria_chalumnae
YPL178W	CBC2	54	61.607	ENSLOCG00000001518	ncbp2	67	61.607	Lepisosteus_oculatus
YPL178W	CBC2	54	62.832	ENSLAFG00000006372	NCBP2	72	62.832	Loxodonta_africana
YPL178W	CBC2	60	56.800	ENSLAFG00000027581	NCBP2L	82	55.385	Loxodonta_africana
YPL178W	CBC2	54	62.832	ENSMFAG00000001109	NCBP2	82	62.832	Macaca_fascicularis
YPL178W	CBC2	54	62.832	ENSMMUG00000007825	NCBP2	82	62.832	Macaca_mulatta
YPL178W	CBC2	54	62.832	ENSMNEG00000040649	NCBP2	82	62.832	Macaca_nemestrina
YPL178W	CBC2	54	58.407	ENSMAMG00000011314	ncbp2	72	58.407	Mastacembelus_armatus
YPL178W	CBC2	54	58.407	ENSMZEG00005017982	ncbp2	69	58.407	Maylandia_zebra
YPL178W	CBC2	54	60.714	ENSMGAG00000002257	-	80	60.714	Meleagris_gallopavo
YPL178W	CBC2	54	62.832	ENSMAUG00000021481	Ncbp2	72	62.832	Mesocricetus_auratus
YPL178W	CBC2	54	62.832	ENSMICG00000049214	NCBP2	93	55.000	Microcebus_murinus
YPL178W	CBC2	54	60.177	ENSMICG00000012328	-	74	60.177	Microcebus_murinus
YPL178W	CBC2	54	62.832	ENSMOCG00000021390	Ncbp2	72	62.832	Microtus_ochrogaster
YPL178W	CBC2	56	57.265	ENSMMOG00000004234	ncbp2	71	57.265	Mola_mola
YPL178W	CBC2	54	62.832	ENSMODG00000024607	-	72	62.832	Monodelphis_domestica
YPL178W	CBC2	54	63.717	ENSMODG00000023276	-	72	63.717	Monodelphis_domestica
YPL178W	CBC2	54	61.947	ENSMODG00000015908	-	72	61.947	Monodelphis_domestica
YPL178W	CBC2	54	62.832	ENSMODG00000024608	-	72	62.832	Monodelphis_domestica
YPL178W	CBC2	54	62.832	MGP_CAROLIEiJ_G0020659	Ncbp2	72	62.832	Mus_caroli
YPL178W	CBC2	54	62.832	ENSMUSG00000022774	Ncbp2	72	62.832	Mus_musculus
YPL178W	CBC2	54	62.832	MGP_PahariEiJ_G0016363	Ncbp2	72	62.832	Mus_pahari
YPL178W	CBC2	54	62.832	MGP_SPRETEiJ_G0021555	Ncbp2	72	62.832	Mus_spretus
YPL178W	CBC2	53	56.757	ENSMPUG00000018445	NCBP2L	71	56.757	Mustela_putorius_furo
YPL178W	CBC2	54	62.832	ENSMPUG00000003806	NCBP2	69	62.832	Mustela_putorius_furo
YPL178W	CBC2	54	62.832	ENSMLUG00000017500	NCBP2	72	62.832	Myotis_lucifugus
YPL178W	CBC2	54	62.832	ENSNGAG00000011678	Ncbp2	72	62.832	Nannospalax_galili
YPL178W	CBC2	54	62.832	ENSNLEG00000001727	NCBP2	82	62.832	Nomascus_leucogenys
YPL178W	CBC2	54	61.947	ENSMEUG00000004730	-	76	59.664	Notamacropus_eugenii
YPL178W	CBC2	54	63.717	ENSMEUG00000008126	-	72	63.717	Notamacropus_eugenii
YPL178W	CBC2	54	61.062	ENSOPRG00000007634	-	72	61.062	Ochotona_princeps
YPL178W	CBC2	57	55.462	ENSODEG00000014452	-	74	55.462	Octodon_degus
YPL178W	CBC2	57	51.639	ENSODEG00000002405	-	69	51.639	Octodon_degus
YPL178W	CBC2	63	52.239	ENSODEG00000009435	-	94	52.239	Octodon_degus
YPL178W	CBC2	53	61.818	ENSODEG00000013562	-	69	61.818	Octodon_degus
YPL178W	CBC2	54	58.407	ENSONIG00000008314	ncbp2	69	58.407	Oreochromis_niloticus
YPL178W	CBC2	54	62.832	ENSOCUG00000006738	NCBP2	72	62.832	Oryctolagus_cuniculus
YPL178W	CBC2	54	58.407	ENSORLG00000011235	ncbp2	69	58.407	Oryzias_latipes
YPL178W	CBC2	54	58.407	ENSORLG00020006739	ncbp2	69	58.407	Oryzias_latipes_hni
YPL178W	CBC2	54	58.407	ENSORLG00015004376	ncbp2	69	58.407	Oryzias_latipes_hsok
YPL178W	CBC2	54	58.407	ENSOMEG00000010498	ncbp2	69	58.407	Oryzias_melastigma
YPL178W	CBC2	54	62.832	ENSOGAG00000005009	NCBP2	72	62.832	Otolemur_garnettii
YPL178W	CBC2	55	50.435	ENSOARG00000006784	-	73	50.435	Ovis_aries
YPL178W	CBC2	54	62.832	ENSOARG00000020367	-	72	62.832	Ovis_aries
YPL178W	CBC2	63	58.333	ENSPPAG00000036789	-	95	58.333	Pan_paniscus
YPL178W	CBC2	54	58.036	ENSPPRG00000010989	NCBP2L	73	58.036	Panthera_pardus
YPL178W	CBC2	54	62.832	ENSPPRG00000005533	NCBP2	93	55.000	Panthera_pardus
YPL178W	CBC2	54	57.143	ENSPTIG00000005892	NCBP2L	73	57.143	Panthera_tigris_altaica
YPL178W	CBC2	54	62.832	ENSPTIG00000009963	NCBP2	82	62.832	Panthera_tigris_altaica
YPL178W	CBC2	63	53.788	ENSPTRG00000048726	NCBP2	95	53.788	Pan_troglodytes
YPL178W	CBC2	54	60.177	ENSPKIG00000025196	ncbp2	69	60.177	Paramormyrops_kingsleyae
YPL178W	CBC2	54	61.947	ENSPSIG00000009533	-	86	61.947	Pelodiscus_sinensis
YPL178W	CBC2	54	63.393	ENSPSIG00000008535	-	80	63.393	Pelodiscus_sinensis
YPL178W	CBC2	54	58.407	ENSPMGG00000023837	ncbp2	69	58.407	Periophthalmus_magnuspinnatus
YPL178W	CBC2	54	63.717	ENSPMAG00000007450	ncbp2	67	63.717	Petromyzon_marinus
YPL178W	CBC2	54	61.947	ENSPCIG00000005127	-	72	61.947	Phascolarctos_cinereus
YPL178W	CBC2	54	59.292	ENSPFOG00000014473	ncbp2	68	59.292	Poecilia_formosa
YPL178W	CBC2	54	59.292	ENSPLAG00000022463	ncbp2	69	59.292	Poecilia_latipinna
YPL178W	CBC2	54	59.292	ENSPMEG00000018372	ncbp2	69	59.292	Poecilia_mexicana
YPL178W	CBC2	54	59.292	ENSPREG00000021643	ncbp2	69	59.292	Poecilia_reticulata
YPL178W	CBC2	54	62.832	ENSPPYG00000014449	NCBP2	60	62.832	Pongo_abelii
YPL178W	CBC2	54	53.982	ENSPPYG00000020614	NCBP2L	73	53.982	Pongo_abelii
YPL178W	CBC2	54	61.947	ENSPCAG00000003219	NCBP2	72	61.947	Procavia_capensis
YPL178W	CBC2	54	62.832	ENSPCOG00000017267	NCBP2	82	62.832	Propithecus_coquereli
YPL178W	CBC2	54	62.832	ENSPVAG00000017273	NCBP2	72	62.832	Pteropus_vampyrus
YPL178W	CBC2	54	58.407	ENSPNYG00000015623	ncbp2	69	58.407	Pundamilia_nyererei
YPL178W	CBC2	54	59.292	ENSPNAG00000005941	ncbp2	69	59.292	Pygocentrus_nattereri
YPL178W	CBC2	54	62.832	ENSRNOG00000048589	Ncbp2	72	62.832	Rattus_norvegicus
YPL178W	CBC2	54	62.832	ENSRNOG00000001746	Ncbp2	72	62.832	Rattus_norvegicus
YPL178W	CBC2	63	57.576	ENSRBIG00000028514	NCBP2	95	57.576	Rhinopithecus_bieti
YPL178W	CBC2	63	57.576	ENSRROG00000032530	-	95	57.576	Rhinopithecus_roxellana
YPL178W	CBC2	54	46.903	ENSSBOG00000006326	-	66	46.903	Saimiri_boliviensis_boliviensis
YPL178W	CBC2	54	63.717	ENSSHAG00000012279	-	72	63.717	Sarcophilus_harrisii
YPL178W	CBC2	54	61.947	ENSSHAG00000004363	-	86	61.947	Sarcophilus_harrisii
YPL178W	CBC2	54	60.177	ENSSFOG00015014972	ncbp2	69	60.177	Scleropages_formosus
YPL178W	CBC2	54	56.637	ENSSMAG00000020056	ncbp2	69	56.637	Scophthalmus_maximus
YPL178W	CBC2	54	57.522	ENSSDUG00000015448	ncbp2	69	57.522	Seriola_dumerili
YPL178W	CBC2	54	57.522	ENSSLDG00000020381	ncbp2	57	57.522	Seriola_lalandi_dorsalis
YPL178W	CBC2	54	61.062	ENSSARG00000014294	NCBP2	72	61.062	Sorex_araneus
YPL178W	CBC2	54	61.062	ENSSPUG00000016545	-	78	61.062	Sphenodon_punctatus
YPL178W	CBC2	54	64.286	ENSSPUG00000000715	-	68	64.286	Sphenodon_punctatus
YPL178W	CBC2	61	53.968	ENSSPAG00000021582	ncbp2	76	53.968	Stegastes_partitus
YPL178W	CBC2	54	62.832	ENSSSCG00000027323	NCBP2	72	62.832	Sus_scrofa
YPL178W	CBC2	55	52.632	ENSSSCG00000012562	NCBP2L	75	52.632	Sus_scrofa
YPL178W	CBC2	54	60.177	ENSTGUG00000008864	-	72	60.177	Taeniopygia_guttata
YPL178W	CBC2	52	59.091	ENSTGUG00000007323	-	84	59.091	Taeniopygia_guttata
YPL178W	CBC2	54	58.036	ENSTRUG00000018355	ncbp2	68	58.036	Takifugu_rubripes
YPL178W	CBC2	54	58.929	ENSTNIG00000006065	ncbp2	72	58.929	Tetraodon_nigroviridis
YPL178W	CBC2	54	62.832	ENSTTRG00000013908	NCBP2	72	62.832	Tursiops_truncatus
YPL178W	CBC2	53	53.153	ENSUAMG00000006936	NCBP2L	69	53.153	Ursus_americanus
YPL178W	CBC2	53	53.153	ENSUMAG00000010623	NCBP2L	69	53.153	Ursus_maritimus
YPL178W	CBC2	54	62.832	ENSUMAG00000003147	NCBP2	72	62.832	Ursus_maritimus
YPL178W	CBC2	54	63.717	ENSVPAG00000010369	NCBP2	87	63.717	Vicugna_pacos
YPL178W	CBC2	54	62.832	ENSVVUG00000008595	NCBP2	73	62.832	Vulpes_vulpes
YPL178W	CBC2	54	58.929	ENSXETG00000019384	ncbp2	72	58.929	Xenopus_tropicalis
YPL178W	CBC2	56	59.322	ENSXCOG00000010968	ncbp2	73	59.322	Xiphophorus_couchianus
YPL178W	CBC2	54	59.292	ENSXMAG00000010096	ncbp2	69	59.292	Xiphophorus_maculatus