EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YPL212C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1635
Position: chrXVI:151515-153149
Accession: S000006133
RBP type: canonical RBP
Summary: tRNA:pseudouridine synthase%3B introduces pseudouridines at positions 26-28%2C 34-36%2C 65%2C and 67 of tRNA%3B also acts on U2 snRNA%3B also pseudouridylates some mRNAs%2C and pseudouridylation level varies with growth phase%3B nuclear protein that appears to be involved in tRNA export%3B PUS1 has a paralog%2C PUS2%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL212C_mRNA	PseudoU_synth_1	PF01416.20	8.4e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL212C_mRNA	-	1635	-	YPL212C_mRNA	544 (aa)	-	Q12211

Gene Model

Click here to download YPL212C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL212C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YPL212C	-	69	42.298	YGL063W	-	97	42.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL212C	-	62	39.877	ENSG00000177192	PUS1	80	44.615	Homo_sapiens
YPL212C	-	56	45.926	ENSAPOG00000007254	pus1	73	45.926	Acanthochromis_polyacanthus
YPL212C	-	60	43.939	ENSAMEG00000013715	PUS1	80	43.939	Ailuropoda_melanoleuca
YPL212C	-	59	41.447	ENSACIG00000009169	pus1	79	41.722	Amphilophus_citrinellus
YPL212C	-	72	31.671	ENSAOCG00000022207	pus1	76	31.671	Amphiprion_ocellaris
YPL212C	-	56	46.667	ENSAPEG00000006039	pus1	81	31.671	Amphiprion_percula
YPL212C	-	61	43.836	ENSATEG00000020688	pus1	86	43.836	Anabas_testudineus
YPL212C	-	63	40.541	ENSACAG00000007367	PUS1	79	46.617	Anolis_carolinensis
YPL212C	-	54	43.564	ENSANAG00000036192	PUS1	94	43.564	Aotus_nancymaae
YPL212C	-	61	38.650	ENSACLG00000020868	pus1	83	40.268	Astatotilapia_calliptera
YPL212C	-	62	44.521	ENSAMXG00000008710	pus1	79	44.521	Astyanax_mexicanus
YPL212C	-	56	43.939	ENSBTAG00000012990	PUS1	77	42.963	Bos_taurus
YPL212C	-	56	36.641	WBGene00004248	pus-1	67	36.641	Caenorhabditis_elegans
YPL212C	-	59	42.105	ENSCAFG00000006429	PUS1	80	42.282	Canis_familiaris
YPL212C	-	59	42.105	ENSCAFG00020010737	PUS1	74	42.282	Canis_lupus_dingo
YPL212C	-	56	43.939	ENSCHIG00000000487	PUS1	77	42.963	Capra_hircus
YPL212C	-	60	42.105	ENSTSYG00000032605	PUS1	87	42.282	Carlito_syrichta
YPL212C	-	51	43.564	ENSCAPG00000006421	PUS1	85	43.564	Cavia_aperea
YPL212C	-	57	43.262	ENSCPOG00000001027	PUS1	74	43.262	Cavia_porcellus
YPL212C	-	61	41.509	ENSCCAG00000015879	PUS1	80	43.564	Cebus_capucinus
YPL212C	-	56	43.939	ENSCATG00000032870	PUS1	79	43.564	Cercocebus_atys
YPL212C	-	60	40.123	ENSCLAG00000011689	PUS1	74	43.262	Chinchilla_lanigera
YPL212C	-	56	44.697	ENSCSAG00000001879	PUS1	72	44.697	Chlorocebus_sabaeus
YPL212C	-	53	42.574	ENSCPBG00000024715	PUS1	83	42.574	Chrysemys_picta_bellii
YPL212C	-	58	39.157	ENSCING00000009426	-	81	39.157	Ciona_intestinalis
YPL212C	-	61	38.043	ENSCSAVG00000003751	-	65	38.043	Ciona_savignyi
YPL212C	-	61	37.430	ENSCANG00000035561	PUS1	84	35.266	Colobus_angolensis_palliatus
YPL212C	-	60	44.697	ENSCGRG00001019592	Pus1	77	44.697	Cricetulus_griseus_chok1gshd
YPL212C	-	60	44.697	ENSCGRG00000004048	Pus1	86	44.697	Cricetulus_griseus_crigri
YPL212C	-	60	41.045	ENSCSEG00000003629	pus1	79	41.045	Cynoglossus_semilaevis
YPL212C	-	69	37.500	ENSCVAG00000001265	pus1	80	44.138	Cyprinodon_variegatus
YPL212C	-	60	44.118	ENSDARG00000045562	pus1	84	47.222	Danio_rerio
YPL212C	-	62	41.447	ENSDNOG00000045576	PUS1	90	43.564	Dasypus_novemcinctus
YPL212C	-	59	38.286	ENSDORG00000011455	Pus1	87	44.554	Dipodomys_ordii
YPL212C	-	71	31.783	FBgn0038811	PUS1	76	31.525	Drosophila_melanogaster
YPL212C	-	56	45.455	ENSETEG00000019160	PUS1	74	45.455	Echinops_telfairi
YPL212C	-	62	45.038	ENSEBUG00000000368	-	65	45.038	Eptatretus_burgeri
YPL212C	-	58	42.657	ENSEASG00005016535	PUS1	72	42.657	Equus_asinus_asinus
YPL212C	-	58	42.657	ENSECAG00000006965	PUS1	78	42.657	Equus_caballus
YPL212C	-	65	39.521	ENSELUG00000010424	pus1	81	43.704	Esox_lucius
YPL212C	-	56	44.697	ENSFCAG00000010780	PUS1	72	44.697	Felis_catus
YPL212C	-	54	44.697	ENSFALG00000008273	PUS1	69	44.697	Ficedula_albicollis
YPL212C	-	59	43.382	ENSFDAG00000012518	PUS1	79	43.382	Fukomys_damarensis
YPL212C	-	68	36.139	ENSFHEG00000010504	pus1	78	42.000	Fundulus_heteroclitus
YPL212C	-	56	42.222	ENSGMOG00000008143	pus1	79	42.222	Gadus_morhua
YPL212C	-	58	42.857	ENSGALG00000002354	PUS1	78	42.857	Gallus_gallus
YPL212C	-	65	39.459	ENSGAFG00000006578	pus1	77	42.667	Gambusia_affinis
YPL212C	-	66	40.741	ENSGACG00000017566	pus1	93	34.328	Gasterosteus_aculeatus
YPL212C	-	57	42.574	ENSGAGG00000016730	-	84	42.574	Gopherus_agassizii
YPL212C	-	56	44.697	ENSGGOG00000009178	PUS1	74	44.554	Gorilla_gorilla
YPL212C	-	61	39.264	ENSHBUG00000001316	pus1	82	40.940	Haplochromis_burtoni
YPL212C	-	58	43.182	ENSHGLG00000016086	PUS1	84	43.182	Heterocephalus_glaber_female
YPL212C	-	58	43.182	ENSHGLG00100019362	PUS1	84	44.361	Heterocephalus_glaber_male
YPL212C	-	60	43.836	ENSHCOG00000014288	pus1	76	43.836	Hippocampus_comes
YPL212C	-	60	45.926	ENSIPUG00000010387	pus1	81	45.588	Ictalurus_punctatus
YPL212C	-	56	44.697	ENSSTOG00000011245	PUS1	72	44.697	Ictidomys_tridecemlineatus
YPL212C	-	56	43.939	ENSJJAG00000000088	Pus1	72	43.939	Jaculus_jaculus
YPL212C	-	53	45.385	ENSKMAG00000012702	pus1	70	45.385	Kryptolebias_marmoratus
YPL212C	-	62	39.634	ENSLBEG00000002845	pus1	78	42.069	Labrus_bergylta
YPL212C	-	51	43.939	ENSLACG00000016044	-	85	43.939	Latimeria_chalumnae
YPL212C	-	75	30.751	ENSLACG00000018598	PUS1	83	30.751	Latimeria_chalumnae
YPL212C	-	62	42.581	ENSLOCG00000006127	pus1	81	45.522	Lepisosteus_oculatus
YPL212C	-	60	45.865	ENSLAFG00000028731	PUS1	88	45.865	Loxodonta_africana
YPL212C	-	56	44.697	ENSMFAG00000041194	PUS1	79	44.554	Macaca_fascicularis
YPL212C	-	56	44.697	ENSMMUG00000031463	PUS1	80	44.697	Macaca_mulatta
YPL212C	-	56	44.697	ENSMNEG00000002814	PUS1	79	44.554	Macaca_nemestrina
YPL212C	-	51	44.554	ENSMLEG00000043560	PUS1	88	44.554	Mandrillus_leucophaeus
YPL212C	-	71	37.073	ENSMAMG00000007371	pus1	81	42.105	Mastacembelus_armatus
YPL212C	-	61	39.264	ENSMZEG00005017746	pus1	76	40.940	Maylandia_zebra
YPL212C	-	54	44.554	ENSMGAG00000001958	PUS1	88	44.554	Meleagris_gallopavo
YPL212C	-	60	44.697	ENSMAUG00000001482	Pus1	77	44.697	Mesocricetus_auratus
YPL212C	-	72	40.252	ENSMICG00000030980	PUS1	83	44.697	Microcebus_murinus
YPL212C	-	60	43.939	ENSMOCG00000022311	Pus1	77	43.939	Microtus_ochrogaster
YPL212C	-	70	40.625	ENSMMOG00000021022	pus1	88	45.113	Mola_mola
YPL212C	-	55	43.077	ENSMODG00000015551	PUS1	68	43.182	Monodelphis_domestica
YPL212C	-	63	43.151	ENSMALG00000013202	pus1	84	42.282	Monopterus_albus
YPL212C	-	60	44.697	MGP_CAROLIEiJ_G0027551	Pus1	86	44.697	Mus_caroli
YPL212C	-	60	44.697	ENSMUSG00000029507	Pus1	86	44.697	Mus_musculus
YPL212C	-	60	44.697	MGP_PahariEiJ_G0024133	Pus1	86	44.697	Mus_pahari
YPL212C	-	60	44.697	MGP_SPRETEiJ_G0028549	Pus1	86	44.697	Mus_spretus
YPL212C	-	60	43.939	ENSMPUG00000002314	PUS1	83	43.939	Mustela_putorius_furo
YPL212C	-	58	41.176	ENSMLUG00000015790	PUS1	88	41.176	Myotis_lucifugus
YPL212C	-	58	43.448	ENSNGAG00000012976	Pus1	75	43.448	Nannospalax_galili
YPL212C	-	61	39.264	ENSNBRG00000020502	pus1	86	40.940	Neolamprologus_brichardi
YPL212C	-	61	41.026	ENSNLEG00000008505	PUS1	91	44.554	Nomascus_leucogenys
YPL212C	-	60	38.636	ENSMEUG00000002825	PUS1	82	38.636	Notamacropus_eugenii
YPL212C	-	56	36.872	ENSOPRG00000002701	-	81	36.872	Ochotona_princeps
YPL212C	-	62	40.741	ENSODEG00000008248	PUS1	86	43.262	Octodon_degus
YPL212C	-	61	38.690	ENSONIG00000003803	pus1	82	40.260	Oreochromis_niloticus
YPL212C	-	54	42.424	ENSOANG00000010619	PUS1	67	42.424	Ornithorhynchus_anatinus
YPL212C	-	60	40.881	ENSOCUG00000007310	PUS1	69	43.448	Oryctolagus_cuniculus
YPL212C	-	69	38.220	ENSORLG00000010787	pus1	78	45.185	Oryzias_latipes
YPL212C	-	59	46.667	ENSORLG00020011483	pus1	78	46.667	Oryzias_latipes_hni
YPL212C	-	69	39.267	ENSORLG00015023012	pus1	83	46.667	Oryzias_latipes_hsok
YPL212C	-	61	41.358	ENSOMEG00000022655	pus1	75	44.521	Oryzias_melastigma
YPL212C	-	63	32.000	ENSOGAG00000008913	PUS3	71	32.000	Otolemur_garnettii
YPL212C	-	56	45.865	ENSOGAG00000008720	PUS1	79	45.865	Otolemur_garnettii
YPL212C	-	56	43.939	ENSOARG00000013316	PUS1	70	43.939	Ovis_aries
YPL212C	-	62	40.491	ENSPPAG00000040971	PUS1	77	45.098	Pan_paniscus
YPL212C	-	56	44.697	ENSPPRG00000015456	PUS1	75	44.697	Panthera_pardus
YPL212C	-	54	44.697	ENSPTIG00000004201	PUS1	77	44.697	Panthera_tigris_altaica
YPL212C	-	65	40.491	ENSPTRG00000005643	PUS1	82	45.098	Pan_troglodytes
YPL212C	-	56	44.697	ENSPANG00000000376	PUS1	79	44.554	Papio_anubis
YPL212C	-	60	40.361	ENSPKIG00000019369	pus1	69	41.844	Paramormyrops_kingsleyae
YPL212C	-	67	36.571	ENSPSIG00000016432	PUS1	75	42.424	Pelodiscus_sinensis
YPL212C	-	58	45.522	ENSPMGG00000004522	pus1	84	44.954	Periophthalmus_magnuspinnatus
YPL212C	-	65	41.212	ENSPEMG00000013448	Pus1	77	44.697	Peromyscus_maniculatus_bairdii
YPL212C	-	73	33.666	ENSPMAG00000004636	pus1	98	33.666	Petromyzon_marinus
YPL212C	-	63	41.358	ENSPFOG00000019669	pus1	79	43.836	Poecilia_formosa
YPL212C	-	63	41.358	ENSPLAG00000002692	-	79	43.836	Poecilia_latipinna
YPL212C	-	63	41.358	ENSPLAG00000007185	pus1	79	43.836	Poecilia_latipinna
YPL212C	-	64	40.588	ENSPMEG00000011115	PUS1	80	43.836	Poecilia_mexicana
YPL212C	-	64	40.588	ENSPMEG00000006038	pus1	82	43.836	Poecilia_mexicana
YPL212C	-	63	41.358	ENSPREG00000007231	pus1	92	43.836	Poecilia_reticulata
YPL212C	-	65	39.877	ENSPPYG00000005132	PUS1	77	43.939	Pongo_abelii
YPL212C	-	56	38.857	ENSPCOG00000015595	PUS1	74	38.857	Propithecus_coquereli
YPL212C	-	61	39.264	ENSPNYG00000013571	pus1	76	40.940	Pundamilia_nyererei
YPL212C	-	60	47.407	ENSPNAG00000003938	pus1	80	44.521	Pygocentrus_nattereri
YPL212C	-	60	44.697	ENSRNOG00000037500	Pus1	77	44.697	Rattus_norvegicus
YPL212C	-	61	40.881	ENSRBIG00000043177	PUS1	80	44.554	Rhinopithecus_bieti
YPL212C	-	61	40.881	ENSRROG00000039744	PUS1	86	39.655	Rhinopithecus_roxellana
YPL212C	-	61	40.881	ENSSBOG00000023593	PUS1	83	43.564	Saimiri_boliviensis_boliviensis
YPL212C	-	59	43.939	ENSSHAG00000013193	PUS1	81	42.069	Sarcophilus_harrisii
YPL212C	-	67	38.462	ENSSFOG00015003463	pus1	79	42.763	Scleropages_formosus
YPL212C	-	59	41.060	ENSSMAG00000019075	pus1	77	41.060	Scophthalmus_maximus
YPL212C	-	65	40.244	ENSSDUG00000007102	pus1	81	41.447	Seriola_dumerili
YPL212C	-	65	40.244	ENSSLDG00000022850	pus1	81	41.447	Seriola_lalandi_dorsalis
YPL212C	-	65	36.813	ENSSPUG00000010009	PUS1	76	41.667	Sphenodon_punctatus
YPL212C	-	67	38.547	ENSSPAG00000006272	pus1	82	43.704	Stegastes_partitus
YPL212C	-	58	43.939	ENSSSCG00000009741	PUS1	79	43.939	Sus_scrofa
YPL212C	-	54	44.697	ENSTGUG00000008068	PUS1	89	44.697	Taeniopygia_guttata
YPL212C	-	57	44.203	ENSTRUG00000002198	pus1	80	44.203	Takifugu_rubripes
YPL212C	-	60	45.455	ENSTNIG00000003942	pus1	83	45.455	Tetraodon_nigroviridis
YPL212C	-	56	44.697	ENSTTRG00000000632	PUS1	72	44.697	Tursiops_truncatus
YPL212C	-	60	44.697	ENSUAMG00000017197	PUS1	83	44.697	Ursus_americanus
YPL212C	-	63	43.939	ENSUMAG00000002831	PUS1	89	43.443	Ursus_maritimus
YPL212C	-	56	44.697	ENSVVUG00000004199	PUS1	70	44.697	Vulpes_vulpes
YPL212C	-	55	42.754	ENSXETG00000033640	-	93	42.754	Xenopus_tropicalis
YPL212C	-	56	44.615	ENSXETG00000002030	pus1	77	44.615	Xenopus_tropicalis
YPL212C	-	63	41.358	ENSXCOG00000004722	pus1	87	42.667	Xiphophorus_couchianus
YPL212C	-	63	41.358	ENSXMAG00000000988	pus1	80	42.667	Xiphophorus_maculatus