EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPL217C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3552
Position: chrXVI:139620-143171
Accession: S000006138
RBP type: canonical RBP
Summary: GTPase required for ribosomal subunit synthesis and rRNA processing%3B required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0%2C A1%2C and A2%3B interacts with Rcl1p%2C which stimulates its GTPase and U3 snoRNA binding activities%3B has similarity to Tsr1p

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPL217C_mRNA	AARP2CN	PF08142.12	5.5e-30	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPL217C_mRNA	-	3552	-	YPL217C_mRNA	1183 (aa)	-	Q08965

Gene Model

Click here to download YPL217C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPL217C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPL217C	-	79	48.826	ENSG00000165733	BMS1	71	46.781	Homo_sapiens
YPL217C	-	63	54.661	ENSAPOG00000002296	bms1	78	43.212	Acanthochromis_polyacanthus
YPL217C	-	82	45.992	ENSAMEG00000016834	BMS1	74	46.257	Ailuropoda_melanoleuca
YPL217C	-	78	48.804	ENSACIG00000002588	bms1	76	47.149	Amphilophus_citrinellus
YPL217C	-	77	50.746	ENSAOCG00000018088	bms1	73	49.074	Amphiprion_ocellaris
YPL217C	-	77	50.746	ENSAPEG00000014673	bms1	73	49.074	Amphiprion_percula
YPL217C	-	80	47.045	ENSAPLG00000003759	BMS1	70	47.273	Anas_platyrhynchos
YPL217C	-	80	47.380	ENSACAG00000004537	-	70	47.598	Anolis_carolinensis
YPL217C	-	81	46.957	ENSANAG00000023432	BMS1	73	45.090	Aotus_nancymaae
YPL217C	-	73	55.301	ENSACLG00000001294	bms1	80	45.508	Astatotilapia_calliptera
YPL217C	-	77	49.626	ENSAMXG00000011236	bms1	71	48.284	Astyanax_mexicanus
YPL217C	-	79	47.186	ENSBTAG00000012878	BMS1	72	45.979	Bos_taurus
YPL217C	-	81	46.957	ENSCJAG00000021705	BMS1	73	45.611	Callithrix_jacchus
YPL217C	-	84	46.809	ENSCAFG00000007114	BMS1	74	46.183	Canis_familiaris
YPL217C	-	84	46.809	ENSCAFG00020025282	BMS1	74	46.183	Canis_lupus_dingo
YPL217C	-	79	46.855	ENSCHIG00000023251	BMS1	73	45.920	Capra_hircus
YPL217C	-	88	41.577	ENSCAPG00000008652	BMS1	72	44.215	Cavia_aperea
YPL217C	-	88	45.000	ENSCPOG00000000502	BMS1	77	44.981	Cavia_porcellus
YPL217C	-	79	38.584	ENSCCAG00000024969	-	73	37.595	Cebus_capucinus
YPL217C	-	81	46.957	ENSCATG00000030625	-	73	45.560	Cercocebus_atys
YPL217C	-	87	45.631	ENSCLAG00000002446	BMS1	72	45.708	Chinchilla_lanigera
YPL217C	-	81	47.174	ENSCSAG00000011118	BMS1	73	45.732	Chlorocebus_sabaeus
YPL217C	-	79	45.979	ENSCHOG00000011055	BMS1	75	45.769	Choloepus_hoffmanni
YPL217C	-	85	45.200	ENSCPBG00000025581	BMS1	73	45.211	Chrysemys_picta_bellii
YPL217C	-	78	49.337	ENSCING00000003181	-	82	50.135	Ciona_intestinalis
YPL217C	-	61	54.483	ENSCSAVG00000004113	-	75	58.333	Ciona_savignyi
YPL217C	-	83	45.946	ENSCANG00000011609	BMS1	76	45.560	Colobus_angolensis_palliatus
YPL217C	-	79	48.826	ENSCGRG00001019461	Bms1	71	48.230	Cricetulus_griseus_chok1gshd
YPL217C	-	80	48.826	ENSCGRG00000009016	Bms1	72	48.230	Cricetulus_griseus_crigri
YPL217C	-	78	48.946	ENSCSEG00000002469	bms1	73	47.748	Cynoglossus_semilaevis
YPL217C	-	83	49.282	ENSCVAG00000008371	bms1	80	47.484	Cyprinodon_variegatus
YPL217C	-	79	47.368	ENSDARG00000054154	bms1	70	50.914	Danio_rerio
YPL217C	-	80	46.398	ENSDNOG00000015761	BMS1	73	45.769	Dasypus_novemcinctus
YPL217C	-	81	46.957	ENSDORG00000002982	Bms1	74	45.106	Dipodomys_ordii
YPL217C	-	78	44.853	FBgn0036686	CG7728	97	42.125	Drosophila_melanogaster
YPL217C	-	56	51.765	ENSETEG00000009554	BMS1	60	45.714	Echinops_telfairi
YPL217C	-	81	46.408	ENSEASG00005006894	BMS1	74	45.577	Equus_asinus_asinus
YPL217C	-	84	44.511	ENSECAG00000001358	BMS1	73	44.511	Equus_caballus
YPL217C	-	79	47.319	ENSELUG00000001756	bms1	71	52.394	Esox_lucius
YPL217C	-	81	46.957	ENSFCAG00000011220	BMS1	74	45.611	Felis_catus
YPL217C	-	69	49.883	ENSFALG00000006882	BMS1	72	45.351	Ficedula_albicollis
YPL217C	-	94	45.905	ENSFDAG00000001422	BMS1	75	44.275	Fukomys_damarensis
YPL217C	-	77	54.728	ENSFHEG00000003367	bms1	75	51.546	Fundulus_heteroclitus
YPL217C	-	75	52.674	ENSGMOG00000000718	bms1	79	46.926	Gadus_morhua
YPL217C	-	77	49.373	ENSGALG00000002624	BMS1	73	46.435	Gallus_gallus
YPL217C	-	92	45.339	ENSGACG00000015334	bms1	75	43.984	Gasterosteus_aculeatus
YPL217C	-	79	47.817	ENSGAGG00000003467	BMS1	74	46.407	Gopherus_agassizii
YPL217C	-	73	55.301	ENSHBUG00000022628	bms1	80	45.703	Haplochromis_burtoni
YPL217C	-	87	45.049	ENSHGLG00000000477	BMS1	74	45.455	Heterocephalus_glaber_female
YPL217C	-	87	45.049	ENSHGLG00100002176	BMS1	77	45.455	Heterocephalus_glaber_male
YPL217C	-	76	47.209	ENSIPUG00000017855	bms1	90	48.513	Ictalurus_punctatus
YPL217C	-	82	46.186	ENSSTOG00000015063	BMS1	74	45.905	Ictidomys_tridecemlineatus
YPL217C	-	82	46.723	ENSJJAG00000017328	Bms1	76	46.035	Jaculus_jaculus
YPL217C	-	85	45.395	ENSLBEG00000028208	bms1	84	43.137	Labrus_bergylta
YPL217C	-	79	48.055	ENSLACG00000001600	BMS1	70	48.513	Latimeria_chalumnae
YPL217C	-	84	45.243	ENSLAFG00000006250	BMS1	74	45.192	Loxodonta_africana
YPL217C	-	65	43.243	ENSMMUG00000007426	-	69	41.966	Macaca_mulatta
YPL217C	-	66	39.942	ENSMLEG00000029084	-	62	39.306	Mandrillus_leucophaeus
YPL217C	-	73	53.409	ENSMAMG00000020855	bms1	79	43.849	Mastacembelus_armatus
YPL217C	-	73	55.301	ENSMZEG00005005663	bms1	80	45.508	Maylandia_zebra
YPL217C	-	74	49.610	ENSMGAG00000001170	BMS1	68	49.870	Meleagris_gallopavo
YPL217C	-	79	48.826	ENSMAUG00000002195	Bms1	71	47.210	Mesocricetus_auratus
YPL217C	-	87	48.081	ENSMICG00000009977	BMS1	75	44.788	Microcebus_murinus
YPL217C	-	79	48.826	ENSMOCG00000002038	Bms1	73	46.012	Microtus_ochrogaster
YPL217C	-	87	48.780	ENSMMOG00000000977	bms1	84	44.930	Mola_mola
YPL217C	-	74	50.580	ENSMODG00000001177	BMS1	73	47.137	Monodelphis_domestica
YPL217C	-	78	49.157	ENSMALG00000009680	bms1	80	45.383	Monopterus_albus
YPL217C	-	77	54.656	MGP_CAROLIEiJ_G0028785	-	63	54.656	Mus_caroli
YPL217C	-	80	47.945	ENSMUSG00000030138	Bms1	75	44.886	Mus_musculus
YPL217C	-	80	47.945	MGP_PahariEiJ_G0022539	Bms1	74	45.577	Mus_pahari
YPL217C	-	80	48.174	MGP_SPRETEiJ_G0029816	Bms1	76	45.298	Mus_spretus
YPL217C	-	85	46.318	ENSMPUG00000017276	BMS1	74	46.065	Mustela_putorius_furo
YPL217C	-	84	46.602	ENSMLUG00000003260	BMS1	74	45.946	Myotis_lucifugus
YPL217C	-	81	45.155	ENSNGAG00000015258	Bms1	77	44.656	Nannospalax_galili
YPL217C	-	80	48.198	ENSNLEG00000015791	BMS1	73	45.000	Nomascus_leucogenys
YPL217C	-	70	50.122	ENSOPRG00000005195	BMS1	65	50.122	Ochotona_princeps
YPL217C	-	98	46.767	ENSODEG00000005554	BMS1	94	44.045	Octodon_degus
YPL217C	-	73	55.301	ENSONIG00000007227	bms1	77	46.809	Oreochromis_niloticus
YPL217C	-	82	46.602	ENSOCUG00000005354	BMS1	74	46.300	Oryctolagus_cuniculus
YPL217C	-	79	52.062	ENSORLG00000014655	bms1	76	52.062	Oryzias_latipes
YPL217C	-	83	48.387	ENSORLG00020016246	bms1	79	48.513	Oryzias_latipes_hni
YPL217C	-	81	47.380	ENSORLG00015014183	bms1	75	52.062	Oryzias_latipes_hsok
YPL217C	-	80	47.277	ENSOGAG00000006511	BMS1	74	44.615	Otolemur_garnettii
YPL217C	-	79	46.626	ENSOARG00000003900	BMS1	73	45.920	Ovis_aries
YPL217C	-	81	47.174	ENSPPAG00000027837	BMS1	73	45.400	Pan_paniscus
YPL217C	-	81	46.855	ENSPPRG00000001311	BMS1	74	45.611	Panthera_pardus
YPL217C	-	80	46.957	ENSPTIG00000009652	BMS1	74	45.365	Panthera_tigris_altaica
YPL217C	-	81	47.174	ENSPTRG00000002441	BMS1	73	45.200	Pan_troglodytes
YPL217C	-	78	49.038	ENSPKIG00000008165	bms1	72	49.199	Paramormyrops_kingsleyae
YPL217C	-	70	50.372	ENSPSIG00000006481	BMS1	71	45.418	Pelodiscus_sinensis
YPL217C	-	80	47.846	ENSPEMG00000022467	Bms1	70	48.132	Peromyscus_maniculatus_bairdii
YPL217C	-	73	50.812	ENSPCIG00000001339	BMS1	67	53.043	Phascolarctos_cinereus
YPL217C	-	75	53.295	ENSPFOG00000015180	bms1	67	53.582	Poecilia_formosa
YPL217C	-	75	53.295	ENSPREG00000002695	bms1	70	53.582	Poecilia_reticulata
YPL217C	-	51	64.384	ENSPCAG00000014528	BMS1	56	44.444	Procavia_capensis
YPL217C	-	69	49.487	ENSPCOG00000023834	-	74	46.138	Propithecus_coquereli
YPL217C	-	83	46.019	ENSPVAG00000000725	BMS1	71	45.560	Pteropus_vampyrus
YPL217C	-	73	55.301	ENSPNYG00000018866	bms1	69	53.018	Pundamilia_nyererei
YPL217C	-	77	55.587	ENSPNAG00000000676	bms1	69	53.784	Pygocentrus_nattereri
YPL217C	-	64	46.089	ENSRNOG00000006576	Bms1	70	44.910	Rattus_norvegicus
YPL217C	-	82	45.543	ENSRROG00000040101	BMS1	71	48.762	Rhinopithecus_roxellana
YPL217C	-	81	46.739	ENSSBOG00000035778	BMS1	73	45.420	Saimiri_boliviensis_boliviensis
YPL217C	-	73	51.980	ENSSHAG00000005062	BMS1	70	51.276	Sarcophilus_harrisii
YPL217C	-	77	49.500	ENSSFOG00015022313	bms1	68	50.500	Scleropages_formosus
YPL217C	-	82	46.827	ENSSMAG00000019966	bms1	69	52.577	Scophthalmus_maximus
YPL217C	-	84	47.619	ENSSDUG00000016875	bms1	83	43.810	Seriola_dumerili
YPL217C	-	80	47.702	ENSSLDG00000015199	bms1	73	48.140	Seriola_lalandi_dorsalis
YPL217C	-	77	49.373	ENSSPUG00000014454	BMS1	72	45.420	Sphenodon_punctatus
YPL217C	-	82	46.398	ENSSSCG00000010198	BMS1	74	45.962	Sus_scrofa
YPL217C	-	87	48.139	ENSTGUG00000006302	-	85	43.775	Taeniopygia_guttata
YPL217C	-	75	52.493	ENSTNIG00000006216	bms1	71	47.856	Tetraodon_nigroviridis
YPL217C	-	53	40.400	ENSTBEG00000001673	-	56	40.263	Tupaia_belangeri
YPL217C	-	86	50.122	ENSTTRG00000007983	BMS1	67	50.122	Tursiops_truncatus
YPL217C	-	82	46.186	ENSUAMG00000023996	BMS1	74	45.873	Ursus_americanus
YPL217C	-	82	46.186	ENSUMAG00000016523	BMS1	74	45.681	Ursus_maritimus
YPL217C	-	62	50.350	ENSVPAG00000007477	BMS1	66	49.224	Vicugna_pacos
YPL217C	-	85	46.615	ENSVVUG00000021305	BMS1	75	45.992	Vulpes_vulpes
YPL217C	-	74	47.880	ENSXETG00000008158	bms1	72	47.653	Xenopus_tropicalis
YPL217C	-	75	53.295	ENSXCOG00000000506	bms1	75	53.868	Xiphophorus_couchianus
YPL217C	-	75	53.295	ENSXMAG00000014236	bms1	71	53.868	Xiphophorus_maculatus