EuRBPDB

Description

Ensembl ID: YPR042C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3228
Position: chrXVI:650435-653662
Accession: S000006246
RBP type: canonical RBP
Summary: PUF family mRNA-binding protein%3B Pumilio homology domain confers RNA binding activity%3B preferentially binds mRNAs encoding membrane-associated proteins%3B binding site composed of two UAAU tetranucleotides%2C separated by a 3-nt linker%3B PUF2 has a paralog%2C JSN1%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPR042C_mRNA	RRM_1	PF00076.22	6.8e-07	1	1
YPR042C_mRNA	PUF	PF00806.19	2.4e-31	1	3
YPR042C_mRNA	PUF	PF00806.19	2.4e-31	2	3
YPR042C_mRNA	PUF	PF00806.19	2.4e-31	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPR042C_mRNA	-	3228	-	YPR042C_mRNA	1075 (aa)	-	Q12221

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YPR042C	-	94	45.059	YJR091C	JSN1	96	44.393