EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YPR080W (Gene tree)
Gene ID: -
Gene Symbol: TEF1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1377
Position: chrXVI:700594-701970
Accession: S000006284
RBP type: canonical RBP
Summary: Translational elongation factor EF-1 alpha%3B in the GTP-bound active form%2C binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides%3B associates with vacuolar Rho1p GTPase%3B may also have a role in tRNA re-export from the nucleus%3B TEF1 has a paralog%2C TEF2%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPR080W_mRNA	GTP_EFTU	PF00009.27	4.1e-55	1	1
YPR080W_mRNA	GTP_EFTU_D2	PF03144.25	1.2e-14	1	1
YPR080W_mRNA	GTP_EFTU_D3	PF03143.17	1.9e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPR080W_mRNA	-	1377	-	YPR080W_mRNA	458 (aa)	-	P02994

Gene Model

Click here to download YPR080W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPR080W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YPR080W	TEF1	75	32.973	YKR084C	-	73	30.508
YPR080W	TEF1	95	30.067	YOR187W	TUF1	90	30.290
YPR080W	TEF1	94	37.671	YDR172W	SUP35	62	37.671
YPR080W	TEF1	100	100.000	YBR118W	TEF2	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPR080W	TEF1	98	77.605	ENSAPOG00000004714	-	96	78.202	Acanthochromis_polyacanthus
YPR080W	TEF1	89	78.589	ENSACIG00000001219	-	95	79.898	Amphilophus_citrinellus
YPR080W	TEF1	88	77.916	ENSAOCG00000022002	-	96	78.589	Amphiprion_ocellaris
YPR080W	TEF1	100	79.130	ENSAOCG00000022039	-	97	79.551	Amphiprion_ocellaris
YPR080W	TEF1	100	78.913	ENSAPEG00000016361	-	97	79.326	Amphiprion_percula
YPR080W	TEF1	98	80.266	ENSATEG00000003244	-	93	80.899	Anabas_testudineus
YPR080W	TEF1	99	80.392	ENSACLG00000022560	-	95	81.633	Astatotilapia_calliptera
YPR080W	TEF1	100	78.091	WBGene00001168	eef-1A.1	96	78.652	Caenorhabditis_elegans
YPR080W	TEF1	100	78.091	WBGene00001169	eef-1A.2	87	89.552	Caenorhabditis_elegans
YPR080W	TEF1	98	77.143	ENSCING00000005126	-	97	77.728	Ciona_intestinalis
YPR080W	TEF1	100	73.978	ENSCING00000007703	-	96	74.165	Ciona_intestinalis
YPR080W	TEF1	99	76.856	ENSCING00000021478	-	96	77.652	Ciona_intestinalis
YPR080W	TEF1	98	77.293	ENSCING00000018894	-	96	77.605	Ciona_intestinalis
YPR080W	TEF1	98	78.681	ENSCSAVG00000009663	-	96	79.018	Ciona_savignyi
YPR080W	TEF1	99	79.431	ENSCSAVG00000006357	-	94	90.000	Ciona_savignyi
YPR080W	TEF1	99	71.895	ENSCSAVG00000001085	-	89	72.360	Ciona_savignyi
YPR080W	TEF1	98	74.074	ENSCSAVG00000003196	-	96	74.336	Ciona_savignyi
YPR080W	TEF1	98	80.266	ENSCSEG00000008011	-	97	80.899	Cynoglossus_semilaevis
YPR080W	TEF1	90	76.029	ENSCSEG00000007972	-	95	76.709	Cynoglossus_semilaevis
YPR080W	TEF1	90	77.913	ENSCSEG00000007992	-	95	78.228	Cynoglossus_semilaevis
YPR080W	TEF1	98	80.488	ENSCVAG00000019356	-	97	81.124	Cyprinodon_variegatus
YPR080W	TEF1	99	78.478	FBgn0284245	eEF1alpha1	95	79.412	Drosophila_melanogaster
YPR080W	TEF1	98	76.770	FBgn0000557	eEF1alpha2	96	77.303	Drosophila_melanogaster
YPR080W	TEF1	100	77.609	ENSEBUG00000015814	-	97	77.978	Eptatretus_burgeri
YPR080W	TEF1	100	80.260	ENSFHEG00000015054	-	97	81.124	Fundulus_heteroclitus
YPR080W	TEF1	98	80.488	ENSGAFG00000014646	-	97	81.124	Gambusia_affinis
YPR080W	TEF1	100	80.217	ENSGACG00000002143	-	96	81.633	Gasterosteus_aculeatus
YPR080W	TEF1	98	80.266	ENSGACG00000002182	-	97	80.899	Gasterosteus_aculeatus
YPR080W	TEF1	55	79.200	ENSHBUG00000017166	-	87	81.466	Haplochromis_burtoni
YPR080W	TEF1	100	77.874	ENSHCOG00000008489	-	96	78.555	Hippocampus_comes
YPR080W	TEF1	98	79.379	ENSHCOG00000008468	-	97	80.000	Hippocampus_comes
YPR080W	TEF1	98	79.823	ENSLBEG00000002759	-	96	80.995	Labrus_bergylta
YPR080W	TEF1	100	79.130	ENSLBEG00000002955	-	97	79.326	Labrus_bergylta
YPR080W	TEF1	98	79.823	ENSMAMG00000007715	-	97	80.449	Mastacembelus_armatus
YPR080W	TEF1	98	80.488	ENSMMOG00000001165	-	90	92.941	Mola_mola
YPR080W	TEF1	99	72.026	ENSMMOG00000018160	-	93	84.783	Mola_mola
YPR080W	TEF1	100	78.696	ENSMMOG00000001106	-	97	79.326	Mola_mola
YPR080W	TEF1	99	69.565	ENSNBRG00000017346	-	95	70.362	Neolamprologus_brichardi
YPR080W	TEF1	76	77.557	ENSONIG00000017760	-	98	77.557	Oreochromis_niloticus
YPR080W	TEF1	98	80.488	ENSORLG00000007614	eef1a	97	81.124	Oryzias_latipes
YPR080W	TEF1	100	80.477	ENSORLG00015002397	-	97	81.124	Oryzias_latipes_hsok
YPR080W	TEF1	98	80.488	ENSOMEG00000018226	-	97	81.124	Oryzias_melastigma
YPR080W	TEF1	95	47.926	ENSPMGG00000022427	-	96	61.250	Periophthalmus_magnuspinnatus
YPR080W	TEF1	98	79.601	ENSPMGG00000023911	-	88	94.118	Periophthalmus_magnuspinnatus
YPR080W	TEF1	98	80.488	ENSPFOG00000003924	-	95	81.124	Poecilia_formosa
YPR080W	TEF1	98	80.488	ENSPLAG00000004316	-	97	81.124	Poecilia_latipinna
YPR080W	TEF1	98	80.488	ENSPMEG00000001010	-	97	81.124	Poecilia_mexicana
YPR080W	TEF1	100	80.260	ENSPREG00000008243	-	97	81.124	Poecilia_reticulata
YPR080W	TEF1	99	80.392	ENSPNYG00000007263	-	95	81.633	Pundamilia_nyererei
YPR080W	TEF1	98	71.247	ENSSMAG00000018469	-	96	72.198	Scophthalmus_maximus
YPR080W	TEF1	53	77.686	ENSSMAG00000016277	-	92	79.828	Scophthalmus_maximus
YPR080W	TEF1	98	80.044	ENSSDUG00000008198	-	97	80.674	Seriola_dumerili
YPR080W	TEF1	98	79.601	ENSSPAG00000001710	-	97	80.225	Stegastes_partitus
YPR080W	TEF1	100	78.913	ENSTRUG00000005066	-	97	79.101	Takifugu_rubripes
YPR080W	TEF1	98	80.266	ENSTRUG00000005727	ef-1a	97	80.899	Takifugu_rubripes
YPR080W	TEF1	98	77.506	ENSTNIG00000002617	-	93	77.978	Tetraodon_nigroviridis
YPR080W	TEF1	98	80.044	ENSTNIG00000002619	-	97	80.674	Tetraodon_nigroviridis
YPR080W	TEF1	98	80.488	ENSXCOG00000001542	-	90	94.118	Xiphophorus_couchianus