EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPR088C (Gene tree)
Gene ID: -
Gene Symbol: SRP54
Alias: SRH1
Full Name: Signal recognition particle (SRP) subunit (homolog of mammalian SRP54)%3B contains the signal sequence-binding activity of SRP%2C interacts with the SRP RNA%2C and mediates binding of SRP to signal receptor%3B contains GTPase domain
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1626 bases
Position: chrXVI:711403-713028
Accession: S000006292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPR088C_mRNA	SRP54	PF00448.22	2.4e-80	1	1
YPR088C_mRNA	SRP54_N	PF02881.19	3.5e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPR088C_mRNA	-	1626	-	YPR088C_mRNA	541 (aa)	-	P20424

Gene Model

Click here to download YPR088C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPR088C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPR088C	SRP54	95	48.276	ENSG00000100883	SRP54	86	53.061	Homo_sapiens
YPR088C	SRP54	95	47.318	ENSAPOG00000011314	srp54	86	51.701	Acanthochromis_polyacanthus
YPR088C	SRP54	95	48.276	ENSAMEG00000015544	SRP54	86	53.061	Ailuropoda_melanoleuca
YPR088C	SRP54	81	51.701	ENSACIG00000022831	srp54	94	51.701	Amphilophus_citrinellus
YPR088C	SRP54	95	47.318	ENSAOCG00000019401	srp54	86	51.701	Amphiprion_ocellaris
YPR088C	SRP54	95	47.318	ENSAPEG00000001977	srp54	86	51.701	Amphiprion_percula
YPR088C	SRP54	95	47.318	ENSATEG00000013877	srp54	86	51.701	Anabas_testudineus
YPR088C	SRP54	81	52.834	ENSAPLG00000010125	SRP54	86	52.834	Anas_platyrhynchos
YPR088C	SRP54	95	48.276	ENSACAG00000002103	-	86	52.834	Anolis_carolinensis
YPR088C	SRP54	60	38.462	ENSACAG00000001124	-	70	45.992	Anolis_carolinensis
YPR088C	SRP54	77	50.118	ENSACAG00000010631	-	79	56.433	Anolis_carolinensis
YPR088C	SRP54	95	48.276	ENSANAG00000022133	SRP54	86	54.315	Aotus_nancymaae
YPR088C	SRP54	95	47.318	ENSACLG00000015866	srp54	86	51.701	Astatotilapia_calliptera
YPR088C	SRP54	95	47.126	ENSAMXG00000032669	SRP54	86	51.474	Astyanax_mexicanus
YPR088C	SRP54	95	48.276	ENSBTAG00000019085	SRP54	86	53.061	Bos_taurus
YPR088C	SRP54	79	50.926	WBGene00009012	F21D5.7	85	50.926	Caenorhabditis_elegans
YPR088C	SRP54	95	48.276	ENSCJAG00000006581	SRP54	86	53.061	Callithrix_jacchus
YPR088C	SRP54	95	48.276	ENSCAFG00000013331	SRP54	86	53.061	Canis_familiaris
YPR088C	SRP54	95	48.276	ENSCAFG00020023427	SRP54	86	53.061	Canis_lupus_dingo
YPR088C	SRP54	95	48.276	ENSCHIG00000026345	SRP54	86	53.061	Capra_hircus
YPR088C	SRP54	81	46.154	ENSTSYG00000035333	-	85	46.154	Carlito_syrichta
YPR088C	SRP54	95	48.084	ENSTSYG00000002680	-	86	52.834	Carlito_syrichta
YPR088C	SRP54	72	37.129	ENSCAPG00000008780	SRP54	84	36.855	Cavia_aperea
YPR088C	SRP54	95	48.467	ENSCPOG00000003691	SRP54	86	53.288	Cavia_porcellus
YPR088C	SRP54	80	48.299	ENSCCAG00000024179	SRP54	81	56.433	Cebus_capucinus
YPR088C	SRP54	95	48.276	ENSCATG00000034083	SRP54	86	53.061	Cercocebus_atys
YPR088C	SRP54	95	48.276	ENSCLAG00000015076	SRP54	86	53.061	Chinchilla_lanigera
YPR088C	SRP54	95	48.276	ENSCSAG00000015575	SRP54	86	53.061	Chlorocebus_sabaeus
YPR088C	SRP54	81	44.773	ENSCHOG00000008986	SRP54	90	44.773	Choloepus_hoffmanni
YPR088C	SRP54	95	48.467	ENSCPBG00000026195	SRP54	86	53.061	Chrysemys_picta_bellii
YPR088C	SRP54	96	48.000	ENSCING00000007380	-	92	50.214	Ciona_intestinalis
YPR088C	SRP54	95	48.276	ENSCANG00000028532	SRP54	86	53.061	Colobus_angolensis_palliatus
YPR088C	SRP54	95	48.467	ENSCGRG00001009525	-	86	53.288	Cricetulus_griseus_chok1gshd
YPR088C	SRP54	79	51.628	ENSCGRG00000009453	-	97	51.628	Cricetulus_griseus_crigri
YPR088C	SRP54	95	47.308	ENSCSEG00000012392	srp54	86	51.701	Cynoglossus_semilaevis
YPR088C	SRP54	95	47.318	ENSCVAG00000010395	srp54	86	51.701	Cyprinodon_variegatus
YPR088C	SRP54	95	46.743	ENSDARG00000098367	srp54	86	51.020	Danio_rerio
YPR088C	SRP54	95	48.276	ENSDNOG00000032525	SRP54	86	53.061	Dasypus_novemcinctus
YPR088C	SRP54	81	45.495	ENSDORG00000005159	-	93	45.495	Dipodomys_ordii
YPR088C	SRP54	79	51.963	FBgn0010747	Srp54k	83	51.963	Drosophila_melanogaster
YPR088C	SRP54	75	32.678	ENSETEG00000012102	-	97	34.190	Echinops_telfairi
YPR088C	SRP54	95	47.893	ENSETEG00000016307	-	86	52.608	Echinops_telfairi
YPR088C	SRP54	94	46.809	ENSEBUG00000009437	-	86	51.020	Eptatretus_burgeri
YPR088C	SRP54	95	48.276	ENSEASG00005002057	SRP54	86	53.061	Equus_asinus_asinus
YPR088C	SRP54	95	48.263	ENSECAG00000018042	SRP54	85	53.061	Equus_caballus
YPR088C	SRP54	95	39.655	ENSEEUG00000001511	SRP54	86	42.857	Erinaceus_europaeus
YPR088C	SRP54	95	47.126	ENSELUG00000003395	srp54	86	51.474	Esox_lucius
YPR088C	SRP54	95	48.276	ENSFCAG00000032033	SRP54	86	53.061	Felis_catus
YPR088C	SRP54	95	48.084	ENSFALG00000005995	SRP54	86	52.834	Ficedula_albicollis
YPR088C	SRP54	95	48.276	ENSFDAG00000016767	SRP54	87	53.061	Fukomys_damarensis
YPR088C	SRP54	95	47.126	ENSFHEG00000004263	srp54	94	46.239	Fundulus_heteroclitus
YPR088C	SRP54	90	43.927	ENSGMOG00000011391	srp54	85	47.942	Gadus_morhua
YPR088C	SRP54	95	48.084	ENSGALG00000023135	SRP54	86	52.834	Gallus_gallus
YPR088C	SRP54	95	47.318	ENSGAFG00000011586	srp54	86	51.701	Gambusia_affinis
YPR088C	SRP54	95	46.743	ENSGACG00000004181	srp54	99	51.020	Gasterosteus_aculeatus
YPR088C	SRP54	95	48.467	ENSGAGG00000014766	SRP54	86	53.061	Gopherus_agassizii
YPR088C	SRP54	95	48.276	ENSGGOG00000002926	SRP54	86	53.061	Gorilla_gorilla
YPR088C	SRP54	95	47.318	ENSHBUG00000005678	srp54	86	51.701	Haplochromis_burtoni
YPR088C	SRP54	95	48.276	ENSHGLG00000002850	SRP54	86	53.061	Heterocephalus_glaber_female
YPR088C	SRP54	93	35.156	ENSHGLG00100007281	-	98	34.940	Heterocephalus_glaber_male
YPR088C	SRP54	95	48.276	ENSHGLG00100005263	SRP54	86	53.061	Heterocephalus_glaber_male
YPR088C	SRP54	95	46.360	ENSHCOG00000021127	srp54	95	46.707	Hippocampus_comes
YPR088C	SRP54	95	46.935	ENSIPUG00000001420	srp54	86	51.247	Ictalurus_punctatus
YPR088C	SRP54	95	48.276	ENSSTOG00000016023	SRP54	86	53.061	Ictidomys_tridecemlineatus
YPR088C	SRP54	63	47.093	ENSJJAG00000016404	-	77	47.093	Jaculus_jaculus
YPR088C	SRP54	95	45.594	ENSJJAG00000013417	-	85	49.887	Jaculus_jaculus
YPR088C	SRP54	95	47.510	ENSKMAG00000007707	srp54	86	51.927	Kryptolebias_marmoratus
YPR088C	SRP54	95	47.318	ENSLBEG00000018690	srp54	86	51.701	Labrus_bergylta
YPR088C	SRP54	95	47.318	ENSLBEG00000021122	srp54	86	51.701	Labrus_bergylta
YPR088C	SRP54	95	47.701	ENSLACG00000017890	SRP54	86	52.154	Latimeria_chalumnae
YPR088C	SRP54	95	47.510	ENSLOCG00000009440	srp54	86	51.927	Lepisosteus_oculatus
YPR088C	SRP54	95	48.276	ENSLAFG00000012007	SRP54	86	53.061	Loxodonta_africana
YPR088C	SRP54	95	48.276	ENSMFAG00000044371	SRP54	86	53.061	Macaca_fascicularis
YPR088C	SRP54	95	48.276	ENSMMUG00000015073	FAM177A1	86	53.061	Macaca_mulatta
YPR088C	SRP54	95	48.276	ENSMNEG00000006947	SRP54	86	53.061	Macaca_nemestrina
YPR088C	SRP54	95	48.276	ENSMLEG00000042251	SRP54	86	53.061	Mandrillus_leucophaeus
YPR088C	SRP54	95	47.318	ENSMAMG00000004803	srp54	86	51.701	Mastacembelus_armatus
YPR088C	SRP54	95	47.318	ENSMZEG00005027528	srp54	86	51.701	Maylandia_zebra
YPR088C	SRP54	95	46.552	ENSMGAG00000012481	SRP54	86	51.020	Meleagris_gallopavo
YPR088C	SRP54	95	48.467	ENSMAUG00000014447	-	86	53.288	Mesocricetus_auratus
YPR088C	SRP54	95	48.276	ENSMICG00000010270	SRP54	86	53.061	Microcebus_murinus
YPR088C	SRP54	81	49.776	ENSMOCG00000000948	-	82	55.890	Microtus_ochrogaster
YPR088C	SRP54	81	50.567	ENSMMOG00000020303	srp54	94	50.567	Mola_mola
YPR088C	SRP54	95	48.276	ENSMODG00000023150	-	86	53.061	Monodelphis_domestica
YPR088C	SRP54	95	48.276	ENSMODG00000012925	-	86	53.061	Monodelphis_domestica
YPR088C	SRP54	81	51.701	ENSMALG00000009163	srp54	96	51.701	Monopterus_albus
YPR088C	SRP54	95	48.467	MGP_CAROLIEiJ_G0017754	-	86	53.288	Mus_caroli
YPR088C	SRP54	95	48.467	ENSMUSG00000073079	Srp54a	100	45.763	Mus_musculus
YPR088C	SRP54	95	48.467	ENSMUSG00000079108	Srp54c	86	53.288	Mus_musculus
YPR088C	SRP54	95	48.467	ENSMUSG00000112449	Srp54b	86	53.288	Mus_musculus
YPR088C	SRP54	95	48.467	MGP_PahariEiJ_G0029510	-	86	53.288	Mus_pahari
YPR088C	SRP54	95	48.276	ENSMPUG00000016302	SRP54	86	53.061	Mustela_putorius_furo
YPR088C	SRP54	95	48.084	ENSMLUG00000008958	SRP54	86	52.834	Myotis_lucifugus
YPR088C	SRP54	95	42.146	ENSNGAG00000019806	-	84	45.805	Nannospalax_galili
YPR088C	SRP54	81	48.655	ENSNBRG00000006000	srp54	82	54.247	Neolamprologus_brichardi
YPR088C	SRP54	95	48.276	ENSNLEG00000003496	SRP54	86	53.061	Nomascus_leucogenys
YPR088C	SRP54	60	51.661	ENSMEUG00000000138	-	74	51.661	Notamacropus_eugenii
YPR088C	SRP54	95	48.276	ENSODEG00000004865	SRP54	86	53.061	Octodon_degus
YPR088C	SRP54	95	47.318	ENSONIG00000011768	srp54	86	51.701	Oreochromis_niloticus
YPR088C	SRP54	95	48.276	ENSOANG00000014051	SRP54	86	53.061	Ornithorhynchus_anatinus
YPR088C	SRP54	95	48.276	ENSOCUG00000007838	SRP54	97	49.109	Oryctolagus_cuniculus
YPR088C	SRP54	95	47.126	ENSORLG00000010027	srp54	86	51.474	Oryzias_latipes
YPR088C	SRP54	95	47.126	ENSORLG00020001878	srp54	86	51.474	Oryzias_latipes_hni
YPR088C	SRP54	95	47.126	ENSORLG00015021866	srp54	86	51.474	Oryzias_latipes_hsok
YPR088C	SRP54	95	47.126	ENSOMEG00000020952	srp54	86	51.474	Oryzias_melastigma
YPR088C	SRP54	95	48.276	ENSOGAG00000012188	SRP54	86	53.061	Otolemur_garnettii
YPR088C	SRP54	95	48.276	ENSOARG00000007160	SRP54	86	53.061	Ovis_aries
YPR088C	SRP54	95	48.276	ENSPPAG00000017434	SRP54	86	53.061	Pan_paniscus
YPR088C	SRP54	95	48.084	ENSPPRG00000014047	SRP54	86	52.834	Panthera_pardus
YPR088C	SRP54	95	48.276	ENSPTIG00000000744	SRP54	82	53.061	Panthera_tigris_altaica
YPR088C	SRP54	95	48.276	ENSPTRG00000006259	FAM177A1	86	53.061	Pan_troglodytes
YPR088C	SRP54	95	48.276	ENSPANG00000023853	SRP54	86	53.061	Papio_anubis
YPR088C	SRP54	95	46.935	ENSPKIG00000001953	srp54	86	51.247	Paramormyrops_kingsleyae
YPR088C	SRP54	95	48.467	ENSPSIG00000006476	SRP54	86	53.061	Pelodiscus_sinensis
YPR088C	SRP54	81	51.474	ENSPMGG00000004127	srp54	94	51.474	Periophthalmus_magnuspinnatus
YPR088C	SRP54	95	43.762	ENSPEMG00000019634	-	99	45.283	Peromyscus_maniculatus_bairdii
YPR088C	SRP54	95	47.692	ENSPMAG00000006078	-	95	48.400	Petromyzon_marinus
YPR088C	SRP54	95	48.276	ENSPCIG00000016175	SRP54	86	53.061	Phascolarctos_cinereus
YPR088C	SRP54	95	47.318	ENSPFOG00000008870	srp54	86	51.701	Poecilia_formosa
YPR088C	SRP54	95	47.318	ENSPLAG00000009889	srp54	86	51.701	Poecilia_latipinna
YPR088C	SRP54	95	47.318	ENSPMEG00000008601	srp54	86	51.701	Poecilia_mexicana
YPR088C	SRP54	95	47.318	ENSPREG00000004505	srp54	86	51.701	Poecilia_reticulata
YPR088C	SRP54	95	47.126	ENSPPYG00000005739	SRP54	86	51.701	Pongo_abelii
YPR088C	SRP54	95	45.785	ENSPCAG00000006268	SRP54	86	50.113	Procavia_capensis
YPR088C	SRP54	95	47.318	ENSPCOG00000022473	SRP54	86	51.927	Propithecus_coquereli
YPR088C	SRP54	58	53.571	ENSPVAG00000010056	SRP54	81	53.571	Pteropus_vampyrus
YPR088C	SRP54	95	47.318	ENSPNYG00000009717	srp54	86	51.701	Pundamilia_nyererei
YPR088C	SRP54	95	47.126	ENSPNAG00000008544	srp54	86	51.474	Pygocentrus_nattereri
YPR088C	SRP54	95	48.276	ENSRNOG00000032776	Srp54a	86	53.061	Rattus_norvegicus
YPR088C	SRP54	95	48.276	ENSRROG00000041292	SRP54	86	53.061	Rhinopithecus_roxellana
YPR088C	SRP54	90	48.880	ENSSBOG00000035145	SRP54	85	54.146	Saimiri_boliviensis_boliviensis
YPR088C	SRP54	64	45.042	ENSSHAG00000000671	SRP54	79	51.838	Sarcophilus_harrisii
YPR088C	SRP54	95	47.126	ENSSFOG00015013920	srp54	86	51.474	Scleropages_formosus
YPR088C	SRP54	81	51.474	ENSSMAG00000002441	srp54	81	51.474	Scophthalmus_maximus
YPR088C	SRP54	95	47.318	ENSSDUG00000018586	srp54	86	51.701	Seriola_dumerili
YPR088C	SRP54	95	47.318	ENSSLDG00000010476	srp54	86	51.701	Seriola_lalandi_dorsalis
YPR088C	SRP54	95	48.276	ENSSARG00000002744	SRP54	86	53.061	Sorex_araneus
YPR088C	SRP54	95	48.467	ENSSPUG00000013101	SRP54	86	53.061	Sphenodon_punctatus
YPR088C	SRP54	95	47.318	ENSSPAG00000002354	srp54	86	51.701	Stegastes_partitus
YPR088C	SRP54	95	48.276	ENSSSCG00000001955	SRP54	86	53.061	Sus_scrofa
YPR088C	SRP54	81	52.834	ENSTGUG00000011945	-	86	52.834	Taeniopygia_guttata
YPR088C	SRP54	96	46.970	ENSTRUG00000007057	srp54	86	51.474	Takifugu_rubripes
YPR088C	SRP54	96	46.780	ENSTNIG00000002589	srp54	86	51.247	Tetraodon_nigroviridis
YPR088C	SRP54	81	45.964	ENSTBEG00000011409	SRP54	81	51.233	Tupaia_belangeri
YPR088C	SRP54	95	42.146	ENSTTRG00000000928	SRP54	86	45.805	Tursiops_truncatus
YPR088C	SRP54	50	57.037	ENSUAMG00000012385	SRP54	100	57.037	Ursus_americanus
YPR088C	SRP54	95	48.276	ENSUMAG00000011234	SRP54	86	53.061	Ursus_maritimus
YPR088C	SRP54	81	53.061	ENSVPAG00000005668	SRP54	91	53.061	Vicugna_pacos
YPR088C	SRP54	95	48.276	ENSVVUG00000019962	SRP54	86	53.061	Vulpes_vulpes
YPR088C	SRP54	95	40.490	ENSXETG00000012290	srp54	86	43.875	Xenopus_tropicalis
YPR088C	SRP54	81	51.701	ENSXCOG00000004658	srp54	94	51.701	Xiphophorus_couchianus
YPR088C	SRP54	95	47.318	ENSXMAG00000018315	srp54	86	51.701	Xiphophorus_maculatus