EuRBPDB

Description
Ensembl ID
YPR110C (Gene tree)
Gene ID
-
Gene Symbol
RPC40
Alias
RPC5
Full Name
RNA polymerase subunit AC40%3B common to RNA polymerase I and III%3B predominant determinant targeting Ty1 integration upstream of Pol III-transcribed genes
Gene Type
protein_coding
Species
Saccharomyces_cerevisiae
Status
confidence
Strand
Minus strand
Length
1008 bases
Position
chrXVI:745828-746835
Accession
S000006314
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
YPR110C_mRNARNA_pol_A_bacPF01000.261.3e-3011
YPR110C_mRNARNA_pol_LPF01193.245.6e-2111
RNA binding proteome (RBPome)
PID
Title
Method
Time
Author
Doi
26595419Conserved mRNA-binding proteomes in eukaryotic organismsmRBPome & yeast2015 Nov 23Matia Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
YPR110C_mRNA-1008-YPR110C_mRNA335 (aa)-P07703
Gene Model
Protein-Protein Interaction (PPI)
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
YPR110CRPC409646.154ENSG00000171453POLR1C10047.244Homo_sapiens
YPR110CRPC409548.447ENSAPOG00000024356polr1c9248.447Acanthochromis_polyacanthus
YPR110CRPC409347.302ENSAMEG00000012205POLR1C9047.302Ailuropoda_melanoleuca
YPR110CRPC408544.948ENSACIG00000016268polr1c8244.599Amphilophus_citrinellus
YPR110CRPC408630.556ENSACIG00000012060polr2c9230.556Amphilophus_citrinellus
YPR110CRPC409547.826ENSAOCG00000011687polr1c8947.826Amphiprion_ocellaris
YPR110CRPC409548.137ENSAPEG00000002433polr1c9248.137Amphiprion_percula
YPR110CRPC409447.799ENSATEG00000005985polr1c9147.484Anabas_testudineus
YPR110CRPC408349.821ENSAPLG00000002908POLR1C9747.797Anas_platyrhynchos
YPR110CRPC408947.176ENSACAG00000009764POLR1C8447.176Anolis_carolinensis
YPR110CRPC409646.154ENSANAG00000025805POLR1C9246.154Aotus_nancymaae
YPR110CRPC408630.208ENSACLG00000004854polr2c9230.208Astatotilapia_calliptera
YPR110CRPC409549.068ENSACLG00000006573polr1c9248.758Astatotilapia_calliptera
YPR110CRPC409450.158ENSAMXG00000012062polr1c9050.158Astyanax_mexicanus
YPR110CRPC409447.003ENSBTAG00000018969POLR1C9147.003Bos_taurus
YPR110CRPC409342.073WBGene00019275rpac-408942.073Caenorhabditis_elegans
YPR110CRPC409646.462ENSCJAG00000005594POLR1C9346.462Callithrix_jacchus
YPR110CRPC409347.302ENSCAFG00000001872POLR1C9047.302Canis_familiaris
YPR110CRPC405731.220ENSCAFG00020007660POLR2C5431.220Canis_lupus_dingo
YPR110CRPC409347.302ENSCAFG00020012018POLR1C9047.302Canis_lupus_dingo
YPR110CRPC409447.003ENSCHIG00000004352POLR1C9147.003Capra_hircus
YPR110CRPC409646.154ENSTSYG00000011921POLR1C9346.154Carlito_syrichta
YPR110CRPC409046.689ENSCAPG00000015364POLR1C8646.689Cavia_aperea
YPR110CRPC409746.037ENSCPOG00000038098POLR1C9446.037Cavia_porcellus
YPR110CRPC409646.462ENSCCAG00000020169POLR1C9346.462Cebus_capucinus
YPR110CRPC409346.667ENSCATG00000044045POLR1C9147.000Cercocebus_atys
YPR110CRPC409746.037ENSCLAG00000009266POLR1C9446.037Chinchilla_lanigera
YPR110CRPC409346.984ENSCSAG00000011913POLR1C9046.984Chlorocebus_sabaeus
YPR110CRPC405950.505ENSCHOG00000006601POLR1C9350.505Choloepus_hoffmanni
YPR110CRPC409346.984ENSCPBG00000025203POLR1C9046.984Chrysemys_picta_bellii
YPR110CRPC409546.250ENSCING00000003563-9146.250Ciona_intestinalis
YPR110CRPC408631.667ENSCSAVG00000002167-9231.667Ciona_savignyi
YPR110CRPC409346.349ENSCANG00000043167POLR1C9046.349Colobus_angolensis_palliatus
YPR110CRPC409346.984ENSCGRG00001017533Polr1c9046.984Cricetulus_griseus_chok1gshd
YPR110CRPC408647.751ENSCGRG00000013225Polr1c9647.751Cricetulus_griseus_crigri
YPR110CRPC409449.211ENSCSEG00000018097polr1c9049.211Cynoglossus_semilaevis
YPR110CRPC408630.508ENSCSEG00000001719polr2c9230.508Cynoglossus_semilaevis
YPR110CRPC406049.754ENSCVAG00000005684polr1c8448.571Cyprinodon_variegatus
YPR110CRPC405735.417ENSCVAG00000017931polr2c7335.417Cyprinodon_variegatus
YPR110CRPC408630.169ENSCVAG00000004718-9230.169Cyprinodon_variegatus
YPR110CRPC409451.735ENSDARG00000039400polr1c8751.735Danio_rerio
YPR110CRPC409746.012ENSDNOG00000042693POLR1C9346.012Dasypus_novemcinctus
YPR110CRPC409746.626ENSDORG00000000429Polr1c9346.626Dipodomys_ordii
YPR110CRPC409047.020FBgn0031657CG37569047.020Drosophila_melanogaster
YPR110CRPC409345.079ENSETEG00000010807POLR1C9045.079Echinops_telfairi
YPR110CRPC409348.889ENSEBUG00000013725polr1c9048.889Eptatretus_burgeri
YPR110CRPC409646.154ENSEASG00005003338POLR1C9346.154Equus_asinus_asinus
YPR110CRPC409646.462ENSECAG00000023516POLR1C9146.462Equus_caballus
YPR110CRPC409746.319ENSEEUG00000005471POLR1C9346.319Erinaceus_europaeus
YPR110CRPC408630.508ENSELUG00000012259polr2c9230.508Esox_lucius
YPR110CRPC409648.000ENSELUG00000013027polr1c9248.000Esox_lucius
YPR110CRPC409447.003ENSFCAG00000009735POLR1C9147.003Felis_catus
YPR110CRPC409447.152ENSFALG00000012111POLR1C9747.152Ficedula_albicollis
YPR110CRPC409745.872ENSFDAG00000008428POLR1C9345.872Fukomys_damarensis
YPR110CRPC409439.048ENSFHEG00000000262polr1c8939.048Fundulus_heteroclitus
YPR110CRPC408630.169ENSFHEG00000020739polr2c9230.169Fundulus_heteroclitus
YPR110CRPC409448.580ENSGMOG00000013878polr1c9748.580Gadus_morhua
YPR110CRPC409546.729ENSGALG00000010349POLR1C9246.729Gallus_gallus
YPR110CRPC408630.169ENSGAFG00000021951polr2c9230.169Gambusia_affinis
YPR110CRPC409546.894ENSGAFG00000010153polr1c9246.894Gambusia_affinis
YPR110CRPC409648.773ENSGACG00000002453polr1c9248.466Gasterosteus_aculeatus
YPR110CRPC409446.835ENSGAGG00000010640POLR1C9046.835Gopherus_agassizii
YPR110CRPC409646.154ENSGGOG00000010903POLR1C9346.154Gorilla_gorilla
YPR110CRPC408630.208ENSHBUG00000023040polr2c9230.208Haplochromis_burtoni
YPR110CRPC409545.171ENSHBUG00000017816polr1c9145.171Haplochromis_burtoni
YPR110CRPC409745.732ENSHGLG00000019441POLR1C9547.410Heterocephalus_glaber_female
YPR110CRPC409745.732ENSHGLG00100005970POLR1C9547.410Heterocephalus_glaber_male
YPR110CRPC409547.059ENSHCOG00000002179polr1c9247.059Hippocampus_comes
YPR110CRPC409450.789ENSIPUG00000024464polr1c9050.789Ictalurus_punctatus
YPR110CRPC409646.154ENSSTOG00000010631POLR1C9346.154Ictidomys_tridecemlineatus
YPR110CRPC409346.032ENSJJAG00000023110Polr1c9046.032Jaculus_jaculus
YPR110CRPC408630.034ENSKMAG00000016196polr2c9230.034Kryptolebias_marmoratus
YPR110CRPC409548.125ENSKMAG00000014305polr1c8948.125Kryptolebias_marmoratus
YPR110CRPC409847.273ENSLBEG00000014925polr1c9346.970Labrus_bergylta
YPR110CRPC409537.963ENSLACG00000012567POLR1C9437.963Latimeria_chalumnae
YPR110CRPC409449.211ENSLOCG00000016710polr1c8749.211Lepisosteus_oculatus
YPR110CRPC408647.423ENSLAFG00000026248POLR1C9647.423Loxodonta_africana
YPR110CRPC405731.795ENSLAFG00000027230POLR2C6731.795Loxodonta_africana
YPR110CRPC409346.667ENSMFAG00000046295POLR1C9147.000Macaca_fascicularis
YPR110CRPC409346.667ENSMMUG00000015192POLR1C9147.000Macaca_mulatta
YPR110CRPC409346.667ENSMNEG00000028073POLR1C9147.000Macaca_nemestrina
YPR110CRPC409446.519ENSMLEG00000034818POLR1C9147.000Mandrillus_leucophaeus
YPR110CRPC409548.137ENSMAMG00000008700polr1c9248.137Mastacembelus_armatus
YPR110CRPC409549.068ENSMZEG00005018545polr1c9248.758Maylandia_zebra
YPR110CRPC408630.208ENSMZEG00005015329polr2c9230.208Maylandia_zebra
YPR110CRPC408049.071ENSMGAG00000011020POLR1C9349.071Meleagris_gallopavo
YPR110CRPC409346.984ENSMAUG00000014329Polr1c9046.984Mesocricetus_auratus
YPR110CRPC409645.846ENSMICG00000005027POLR1C9347.079Microcebus_murinus
YPR110CRPC405731.606ENSMOCG00000013652Polr2c6631.606Microtus_ochrogaster
YPR110CRPC409446.688ENSMOCG00000017549Polr1c9146.688Microtus_ochrogaster
YPR110CRPC409537.855ENSMMOG00000005380polr1c9037.855Mola_mola
YPR110CRPC408348.754ENSMODG00000018964POLR1C9648.754Monodelphis_domestica
YPR110CRPC409440.317ENSMALG00000011711polr1c8940.317Monopterus_albus
YPR110CRPC409342.222MGP_CAROLIEiJ_G0021662Polr1c9548.400Mus_caroli
YPR110CRPC405731.220ENSMUSG00000031783Polr2c5533.333Mus_musculus
YPR110CRPC409346.984ENSMUSG00000067148Polr1c9548.000Mus_musculus
YPR110CRPC409347.937MGP_PahariEiJ_G0020654Polr1c9549.200Mus_pahari
YPR110CRPC409346.984MGP_SPRETEiJ_G0022574Polr1c9548.000Mus_spretus
YPR110CRPC409447.468ENSMPUG00000012916POLR1C8247.468Mustela_putorius_furo
YPR110CRPC409646.462ENSMLUG00000017751POLR1C9346.462Myotis_lucifugus
YPR110CRPC409646.154ENSNGAG00000023487Polr1c9648.043Nannospalax_galili
YPR110CRPC409549.068ENSNBRG00000018742polr1c9248.758Neolamprologus_brichardi
YPR110CRPC405430.108ENSNLEG00000003034POLR2C6930.108Nomascus_leucogenys
YPR110CRPC409646.462ENSNLEG00000004035POLR1C9346.462Nomascus_leucogenys
YPR110CRPC408144.076ENSMEUG00000006778POLR1C7744.076Notamacropus_eugenii
YPR110CRPC407448.193ENSOPRG00000000145POLR1C9248.193Ochotona_princeps
YPR110CRPC409746.037ENSODEG00000015831-9446.037Octodon_degus
YPR110CRPC406148.058ENSODEG00000017109-9448.058Octodon_degus
YPR110CRPC408630.208ENSONIG00000010914polr2c9230.208Oreochromis_niloticus
YPR110CRPC409549.068ENSONIG00000013133polr1c9048.758Oreochromis_niloticus
YPR110CRPC409644.615ENSOANG00000003043POLR1C9344.615Ornithorhynchus_anatinus
YPR110CRPC409647.077ENSOCUG00000005504POLR1C9347.077Oryctolagus_cuniculus
YPR110CRPC409945.075ENSORLG00000019743polr1c9545.075Oryzias_latipes
YPR110CRPC406841.631ENSORLG00020005555polr1c6941.631Oryzias_latipes_hni
YPR110CRPC409945.075ENSORLG00020006489POLR1C9545.075Oryzias_latipes_hni
YPR110CRPC409944.776ENSORLG00015013322polr1c9544.776Oryzias_latipes_hsok
YPR110CRPC4010046.921ENSOMEG00000016527polr1c9746.921Oryzias_melastigma
YPR110CRPC409746.037ENSOGAG00000016318POLR1C9446.037Otolemur_garnettii
YPR110CRPC409446.688ENSOARG00000007503POLR1C9146.688Ovis_aries
YPR110CRPC409646.154ENSPPAG00000043678POLR1C9346.154Pan_paniscus
YPR110CRPC409447.003ENSPPRG00000009760POLR1C9147.003Panthera_pardus
YPR110CRPC409447.003ENSPTIG00000014813POLR1C9147.003Panthera_tigris_altaica
YPR110CRPC409646.154ENSPTRG00000018202POLR1C9346.154Pan_troglodytes
YPR110CRPC409346.667ENSPANG00000009025POLR1C9147.000Papio_anubis
YPR110CRPC409549.533ENSPKIG00000009858polr1c9249.533Paramormyrops_kingsleyae
YPR110CRPC409447.152ENSPSIG00000012580POLR1C8547.152Pelodiscus_sinensis
YPR110CRPC405734.211ENSPMGG00000021249polr2c7434.211Periophthalmus_magnuspinnatus
YPR110CRPC409440.000ENSPMGG00000012121polr1c8940.000Periophthalmus_magnuspinnatus
YPR110CRPC409347.619ENSPEMG00000006970Polr1c9047.619Peromyscus_maniculatus_bairdii
YPR110CRPC409948.060ENSPMAG00000005560polr1c9548.060Petromyzon_marinus
YPR110CRPC405733.163ENSPMAG00000004827polr2c7933.163Petromyzon_marinus
YPR110CRPC409745.706ENSPCIG00000028137POLR1C9145.706Phascolarctos_cinereus
YPR110CRPC409547.205ENSPFOG00000014342POLR1C9247.205Poecilia_formosa
YPR110CRPC409547.205ENSPFOG00000014357polr1c9047.205Poecilia_formosa
YPR110CRPC408630.169ENSPFOG00000024666polr2c9230.169Poecilia_formosa
YPR110CRPC406050.246ENSPLAG00000004111polr1c8849.048Poecilia_latipinna
YPR110CRPC408630.169ENSPLAG00000019750polr2c9230.169Poecilia_latipinna
YPR110CRPC409547.205ENSPMEG00000011877-9247.205Poecilia_mexicana
YPR110CRPC409547.205ENSPMEG00000008420polr1c9247.205Poecilia_mexicana
YPR110CRPC408630.169ENSPMEG00000001741polr2c9230.169Poecilia_mexicana
YPR110CRPC409547.352ENSPREG00000007985polr1c9247.352Poecilia_reticulata
YPR110CRPC409346.667ENSPPYG00000016645POLR1C9146.624Pongo_abelii
YPR110CRPC409746.012ENSPCOG00000024628POLR1C9346.012Propithecus_coquereli
YPR110CRPC409741.590ENSPVAG00000005689POLR1C9341.590Pteropus_vampyrus
YPR110CRPC409549.068ENSPNYG00000003620polr1c9248.758Pundamilia_nyererei
YPR110CRPC408630.208ENSPNYG00000003756polr2c9230.208Pundamilia_nyererei
YPR110CRPC408630.169ENSPNAG00000012133polr2c9230.169Pygocentrus_nattereri
YPR110CRPC409549.844ENSPNAG00000008443polr1c9249.844Pygocentrus_nattereri
YPR110CRPC409347.619ENSRNOG00000019079Polr1c9549.200Rattus_norvegicus
YPR110CRPC409346.349ENSRBIG00000007155POLR1C9046.349Rhinopithecus_bieti
YPR110CRPC409346.349ENSRROG00000000257POLR1C9046.349Rhinopithecus_roxellana
YPR110CRPC409646.462ENSSBOG00000025735POLR1C9348.276Saimiri_boliviensis_boliviensis
YPR110CRPC409742.025ENSSHAG00000014456POLR1C9342.025Sarcophilus_harrisii
YPR110CRPC409551.402ENSSFOG00015019860polr1c9251.402Scleropages_formosus
YPR110CRPC409447.950ENSSMAG00000018865polr1c9047.950Scophthalmus_maximus
YPR110CRPC409448.428ENSSDUG00000015745polr1c8348.428Seriola_dumerili
YPR110CRPC409448.428ENSSLDG00000018285polr1c8348.428Seriola_lalandi_dorsalis
YPR110CRPC409744.807ENSSPUG00000011822POLR1C9744.807Sphenodon_punctatus
YPR110CRPC409548.137ENSSPAG00000022369polr1c9248.137Stegastes_partitus
YPR110CRPC409646.154ENSSSCG00000028007POLR1C9347.079Sus_scrofa
YPR110CRPC409546.729ENSTGUG00000009159POLR1C9446.729Taeniopygia_guttata
YPR110CRPC408630.169ENSTRUG00000004676polr2c9230.169Takifugu_rubripes
YPR110CRPC409547.077ENSTRUG00000006264polr1c9247.077Takifugu_rubripes
YPR110CRPC407547.809ENSTTRG00000006344POLR1C7247.809Tursiops_truncatus
YPR110CRPC409347.302ENSUAMG00000025602POLR1C9047.302Ursus_americanus
YPR110CRPC409347.302ENSUMAG00000005938POLR1C9047.302Ursus_maritimus
YPR110CRPC409345.397ENSVVUG00000028922POLR1C9045.397Vulpes_vulpes
YPR110CRPC409448.580ENSXETG00000010882polr1c9048.580Xenopus_tropicalis
YPR110CRPC409548.287ENSXCOG00000014185polr1c9248.287Xiphophorus_couchianus
YPR110CRPC408630.169ENSXCOG00000020734polr2c9230.169Xiphophorus_couchianus
YPR110CRPC408630.169ENSXMAG00000015984polr2c9230.169Xiphophorus_maculatus
YPR110CRPC409547.826ENSXMAG00000015076polr1c9247.826Xiphophorus_maculatus