EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YPR112C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2664
Position: chrXVI:749256-751919
Accession: S000006316
RBP type: canonical RBP
Summary: Essential conserved small ribosomal subunit (40s) synthesis factor%3B component of the 90S preribosome%3B required for production of 18S rRNA and small ribosomal subunit%3B contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YPR112C_mRNA	RRM_5	PF13893.6	2.1e-08	1	1
YPR112C_mRNA	RRM_1	PF00076.22	2.2e-68	1	5
YPR112C_mRNA	RRM_1	PF00076.22	2.2e-68	2	5
YPR112C_mRNA	RRM_1	PF00076.22	2.2e-68	3	5
YPR112C_mRNA	RRM_1	PF00076.22	2.2e-68	4	5
YPR112C_mRNA	RRM_1	PF00076.22	2.2e-68	5	5

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YPR112C_mRNA	-	2664	-	YPR112C_mRNA	887 (aa)	-	Q06106

Gene Model

Click here to download YPR112C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YPR112C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YPR112C	-	81	38.359	ENSG00000122965	RBM19	70	39.038	Homo_sapiens
YPR112C	-	76	38.023	ENSAMEG00000008544	RBM19	80	38.889	Ailuropoda_melanoleuca
YPR112C	-	77	38.123	ENSACIG00000017780	rbm19	64	39.575	Amphilophus_citrinellus
YPR112C	-	67	42.857	ENSATEG00000007000	rbm19	93	37.079	Anabas_testudineus
YPR112C	-	72	35.835	ENSAPLG00000015319	RBM19	96	36.891	Anas_platyrhynchos
YPR112C	-	78	40.816	ENSACAG00000005065	RBM19	80	41.731	Anolis_carolinensis
YPR112C	-	76	38.679	ENSANAG00000024136	RBM19	70	39.163	Aotus_nancymaae
YPR112C	-	58	37.115	ENSAMXG00000017073	rbm19	56	39.029	Astyanax_mexicanus
YPR112C	-	76	38.577	ENSBTAG00000031824	RBM19	91	39.469	Bos_taurus
YPR112C	-	97	31.573	WBGene00004315	rbd-1	88	35.965	Caenorhabditis_elegans
YPR112C	-	68	39.216	ENSCJAG00000009798	RBM19	70	39.163	Callithrix_jacchus
YPR112C	-	76	39.579	ENSCAFG00000009146	RBM19	83	40.038	Canis_familiaris
YPR112C	-	76	39.579	ENSCAFG00020017862	RBM19	83	40.038	Canis_lupus_dingo
YPR112C	-	76	38.390	ENSCHIG00000014917	RBM19	91	39.279	Capra_hircus
YPR112C	-	71	39.216	ENSTSYG00000007207	RBM19	81	37.100	Carlito_syrichta
YPR112C	-	71	36.944	ENSCAPG00000006869	RBM19	78	37.965	Cavia_aperea
YPR112C	-	76	36.852	ENSCPOG00000026629	RBM19	80	37.812	Cavia_porcellus
YPR112C	-	77	38.302	ENSCCAG00000021665	-	71	38.213	Cebus_capucinus
YPR112C	-	69	36.986	ENSCCAG00000026637	-	67	36.986	Cebus_capucinus
YPR112C	-	76	38.722	ENSCATG00000035841	RBM19	79	39.245	Cercocebus_atys
YPR112C	-	82	38.068	ENSCLAG00000009965	RBM19	95	39.038	Chinchilla_lanigera
YPR112C	-	76	37.193	ENSCSAG00000002352	RBM19	68	37.456	Chlorocebus_sabaeus
YPR112C	-	79	39.033	ENSCPBG00000011990	RBM19	80	38.835	Chrysemys_picta_bellii
YPR112C	-	73	34.594	ENSCING00000023076	-	98	34.297	Ciona_intestinalis
YPR112C	-	73	39.216	ENSCANG00000035927	RBM19	80	39.394	Colobus_angolensis_palliatus
YPR112C	-	77	40.077	ENSCGRG00001000323	Rbm19	71	39.768	Cricetulus_griseus_chok1gshd
YPR112C	-	77	40.077	ENSCGRG00000010371	Rbm19	71	39.768	Cricetulus_griseus_crigri
YPR112C	-	77	37.143	ENSDARG00000042590	rbm19	92	37.597	Danio_rerio
YPR112C	-	77	37.893	ENSDNOG00000024534	RBM19	77	38.506	Dasypus_novemcinctus
YPR112C	-	76	40.117	ENSDORG00000008549	Rbm19	73	40.039	Dipodomys_ordii
YPR112C	-	58	33.774	FBgn0036018	CG3335	94	31.034	Drosophila_melanogaster
YPR112C	-	72	43.836	ENSEBUG00000008521	-	68	43.836	Eptatretus_burgeri
YPR112C	-	76	37.595	ENSEASG00005009452	RBM19	78	37.827	Equus_asinus_asinus
YPR112C	-	76	38.023	ENSECAG00000023716	RBM19	70	38.343	Equus_caballus
YPR112C	-	81	36.174	ENSELUG00000012561	rbm19	94	36.364	Esox_lucius
YPR112C	-	76	38.095	ENSFCAG00000002962	RBM19	70	38.772	Felis_catus
YPR112C	-	77	38.846	ENSFALG00000007768	RBM19	94	38.534	Ficedula_albicollis
YPR112C	-	76	38.004	ENSFDAG00000004629	RBM19	81	39.038	Fukomys_damarensis
YPR112C	-	70	39.796	ENSGMOG00000013120	rbm19	67	39.796	Gadus_morhua
YPR112C	-	79	37.341	ENSGALG00000008289	RBM19	95	37.803	Gallus_gallus
YPR112C	-	58	39.231	ENSGAGG00000019457	RBM19	89	38.868	Gopherus_agassizii
YPR112C	-	76	38.931	ENSGGOG00000007371	RBM19	70	39.423	Gorilla_gorilla
YPR112C	-	72	38.776	ENSHBUG00000009047	rbm19	95	30.098	Haplochromis_burtoni
YPR112C	-	77	37.714	ENSHGLG00000010899	RBM19	70	37.958	Heterocephalus_glaber_female
YPR112C	-	77	37.452	ENSHGLG00100017936	RBM19	70	37.692	Heterocephalus_glaber_male
YPR112C	-	79	36.692	ENSHCOG00000016446	rbm19	95	37.718	Hippocampus_comes
YPR112C	-	97	37.313	ENSIPUG00000023849	rbm19	94	37.687	Ictalurus_punctatus
YPR112C	-	72	37.755	ENSLBEG00000012897	rbm19	63	37.755	Labrus_bergylta
YPR112C	-	55	36.739	ENSLACG00000012030	RBM19	74	37.782	Latimeria_chalumnae
YPR112C	-	77	36.450	ENSLOCG00000008341	rbm19	69	38.150	Lepisosteus_oculatus
YPR112C	-	79	37.363	ENSLAFG00000004187	RBM19	84	38.546	Loxodonta_africana
YPR112C	-	80	39.098	ENSMFAG00000046091	RBM19	78	39.394	Macaca_fascicularis
YPR112C	-	80	39.098	ENSMMUG00000010496	RBM19	81	39.394	Macaca_mulatta
YPR112C	-	76	36.106	ENSMNEG00000028452	RBM19	82	38.429	Macaca_nemestrina
YPR112C	-	80	38.910	ENSMLEG00000034550	RBM19	70	39.205	Mandrillus_leucophaeus
YPR112C	-	54	40.933	ENSMGAG00000010087	RBM19	76	32.400	Meleagris_gallopavo
YPR112C	-	77	39.458	ENSMAUG00000019290	Rbm19	70	40.078	Mesocricetus_auratus
YPR112C	-	76	38.123	ENSMICG00000014423	RBM19	92	38.815	Microcebus_murinus
YPR112C	-	56	37.059	ENSMMOG00000017839	rbm19	95	30.694	Mola_mola
YPR112C	-	78	37.711	ENSMODG00000003597	RBM19	92	39.848	Monodelphis_domestica
YPR112C	-	77	37.977	MGP_CAROLIEiJ_G0027656	Rbm19	72	38.478	Mus_caroli
YPR112C	-	77	37.958	ENSMUSG00000029594	Rbm19	72	38.413	Mus_musculus
YPR112C	-	77	37.833	MGP_PahariEiJ_G0024238	Rbm19	70	38.912	Mus_pahari
YPR112C	-	77	37.885	MGP_SPRETEiJ_G0028656	Rbm19	71	38.388	Mus_spretus
YPR112C	-	78	37.753	ENSMPUG00000002694	RBM19	86	38.964	Mustela_putorius_furo
YPR112C	-	76	38.113	ENSMLUG00000015075	RBM19	80	38.302	Myotis_lucifugus
YPR112C	-	76	37.838	ENSNGAG00000009076	Rbm19	69	38.536	Nannospalax_galili
YPR112C	-	81	38.359	ENSNLEG00000000190	RBM19	70	39.038	Nomascus_leucogenys
YPR112C	-	69	33.824	ENSMEUG00000004045	RBM19	74	35.433	Notamacropus_eugenii
YPR112C	-	76	39.252	ENSOPRG00000012064	RBM19	95	38.964	Ochotona_princeps
YPR112C	-	76	35.962	ENSODEG00000012977	RBM19	80	36.986	Octodon_degus
YPR112C	-	61	37.912	ENSONIG00000013576	rbm19	95	30.876	Oreochromis_niloticus
YPR112C	-	76	38.462	ENSOCUG00000009398	RBM19	69	38.760	Oryctolagus_cuniculus
YPR112C	-	81	37.477	ENSORLG00000008077	rbm19	96	38.447	Oryzias_latipes
YPR112C	-	72	37.660	ENSORLG00020013187	rbm19	96	37.879	Oryzias_latipes_hni
YPR112C	-	79	37.660	ENSORLG00015001774	rbm19	94	38.636	Oryzias_latipes_hsok
YPR112C	-	72	37.591	ENSOMEG00000003334	rbm19	94	38.185	Oryzias_melastigma
YPR112C	-	77	37.634	ENSOGAG00000000602	RBM19	85	39.485	Otolemur_garnettii
YPR112C	-	76	38.302	ENSOARG00000006827	RBM19	91	39.163	Ovis_aries
YPR112C	-	81	38.667	ENSPPAG00000043712	RBM19	70	39.155	Pan_paniscus
YPR112C	-	76	37.905	ENSPPRG00000023027	RBM19	70	38.772	Panthera_pardus
YPR112C	-	76	34.667	ENSPTIG00000011096	RBM19	72	35.810	Panthera_tigris_altaica
YPR112C	-	81	38.476	ENSPTRG00000005494	RBM19	70	39.155	Pan_troglodytes
YPR112C	-	80	38.910	ENSPANG00000004795	RBM19	78	39.205	Papio_anubis
YPR112C	-	98	30.127	ENSPKIG00000017095	rbm19	95	30.425	Paramormyrops_kingsleyae
YPR112C	-	61	38.302	ENSPSIG00000008191	RBM19	66	38.679	Pelodiscus_sinensis
YPR112C	-	57	36.187	ENSPMGG00000019087	rbm19	97	30.260	Periophthalmus_magnuspinnatus
YPR112C	-	77	39.692	ENSPEMG00000018058	Rbm19	80	40.000	Peromyscus_maniculatus_bairdii
YPR112C	-	77	37.828	ENSPCIG00000028861	RBM19	70	39.231	Phascolarctos_cinereus
YPR112C	-	71	38.776	ENSPFOG00000015300	rbm19	95	37.665	Poecilia_formosa
YPR112C	-	71	38.776	ENSPLAG00000000059	rbm19	71	37.665	Poecilia_latipinna
YPR112C	-	71	38.776	ENSPMEG00000018585	rbm19	71	37.476	Poecilia_mexicana
YPR112C	-	71	38.776	ENSPREG00000000978	rbm19	71	37.240	Poecilia_reticulata
YPR112C	-	81	38.550	ENSPPYG00000004993	RBM19	72	39.231	Pongo_abelii
YPR112C	-	76	38.447	ENSPCOG00000016190	RBM19	70	39.695	Propithecus_coquereli
YPR112C	-	76	36.535	ENSPVAG00000011618	RBM19	69	37.571	Pteropus_vampyrus
YPR112C	-	76	37.718	ENSPNAG00000012069	rbm19	93	37.765	Pygocentrus_nattereri
YPR112C	-	87	35.902	ENSRNOG00000001397	Rbm19	70	39.155	Rattus_norvegicus
YPR112C	-	81	39.098	ENSRBIG00000041419	RBM19	81	39.313	Rhinopithecus_bieti
YPR112C	-	81	39.098	ENSRROG00000031938	RBM19	81	39.394	Rhinopithecus_roxellana
YPR112C	-	69	35.045	ENSSBOG00000022679	-	72	34.534	Saimiri_boliviensis_boliviensis
YPR112C	-	76	35.932	ENSSBOG00000021434	-	69	36.502	Saimiri_boliviensis_boliviensis
YPR112C	-	79	39.469	ENSSHAG00000012256	RBM19	98	38.380	Sarcophilus_harrisii
YPR112C	-	69	38.235	ENSSFOG00015005124	rbm19	68	37.205	Scleropages_formosus
YPR112C	-	72	36.197	ENSSMAG00000011828	rbm19	70	36.742	Scophthalmus_maximus
YPR112C	-	72	37.044	ENSSDUG00000013544	rbm19	72	37.476	Seriola_dumerili
YPR112C	-	60	38.202	ENSSPUG00000011064	RBM19	88	38.740	Sphenodon_punctatus
YPR112C	-	76	38.095	ENSSSCG00000009868	RBM19	91	38.921	Sus_scrofa
YPR112C	-	77	38.752	ENSTGUG00000009017	RBM19	94	38.734	Taeniopygia_guttata
YPR112C	-	80	35.687	ENSTRUG00000016032	rbm19	72	38.031	Takifugu_rubripes
YPR112C	-	58	52.874	ENSTTRG00000003987	RBM19	56	48.246	Tursiops_truncatus
YPR112C	-	71	38.973	ENSUAMG00000002076	RBM19	78	39.655	Ursus_americanus
YPR112C	-	79	38.156	ENSUMAG00000010816	RBM19	70	39.655	Ursus_maritimus
YPR112C	-	76	39.771	ENSVVUG00000007886	RBM19	83	40.230	Vulpes_vulpes
YPR112C	-	77	38.376	ENSXETG00000017668	rbm19	94	43.871	Xenopus_tropicalis
YPR112C	-	78	37.294	ENSXCOG00000016995	rbm19	64	37.755	Xiphophorus_couchianus
YPR112C	-	78	37.660	ENSXMAG00000007641	rbm19	71	37.996	Xiphophorus_maculatus