Astyanax_mexicanusFamily: MMR_HSR1 Number of Genes: 310
Ensembl IDSymbolEntrez IDRBD RBPome PRIExpresion PathwayPhenotype ParalogOrthologGO
si:dkey-98f17.5
-
-
dnm1l
gtpbp10
-
-
eefsec
-
-
-
-
rab11a
-
-
-
-
rab20
rab1ba
rab39bb
noa1
-
hbs1l
rab6ba
rab12
ola1
guf1
rab34b
-
-
sept5a
zgc:63587
-
-
gnl3l
arl4aa
-
eef2b
-
-
-
zgc:162879
-
lsg1
ehd4
-
rab14
rab30
drg2
-
-
cracr2ab
-
arl8
arl5a
rasef
arl2
-
-
arl11
opa1
nras
tysnd1
gtpbp6
rab22a
mtif2
-
-
-
-
sept12
ehd2a
-
-
mfn2
si:rp71-84d19.3
rab23
-
-
gnl1
arf3a
-
kras
rab36
sept7a
si:ch211-11k18.4
sar1b
-
eif5b
arl3l2
sept3
srl
-
sept8b
gtpbp3
-
arl3l1
gtpbp4
arf1
sept4a
sept8a
mfn1b
gnl2
gnl3
arl1
mtg1
-
arl13a
-
-
rab11al
-
sept7b
-
-
arl4cb
-
-
-
-
-
si:dkey-125e8.4
arl4ab
-
-
RAB9A (1 of many)
irge4
RAB9A (1 of many)
-
rab9b
-
-
-
-
-
-
-
-
nkiras1
rab25b
-
-
-
-
-
-
rraga
-
-
-
-
-
-
-
-
arl8ba
rab13
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
zgc:162239
-
-
-
-
arf4a
-
-
-
-
-
-
arl5c
ARF5
-
-
-
-
-
zgc:100918
-
-
rab7a
-
-
-
-
nkiras2
-
-
-
-
-
-
rab6a
rab1ab
zgc:165583
-
si:dkey-13a21.4
-
rab42a
arl8bb
-
-
si:cabz01085950.1
-
-
-
-
-
rab41
-
-
-
-
-
rasl10a
-
RAB15
-
-
sept6
-
-
hrasb
-
-
rab32b
-
-
-
-
-
sept9a
-
-
-
-
-
-
-
-
-
-
-
-
arf2a
rasl11a
-
-
-
-
-
-
hrasa
ARL6
rab5ab
-
-
-
-
-
-
-
rab5aa
-
-
-
RAB38
-
-
-
-
-
-
-
-
rab2a
-
zgc:113625
mtg2
-
-
-
SEPT4
-
-
arf2b
-
-
-
-
-
arl3
-
-
-
-
-
-
-
-
-
-
eral1
-
-
-
-
-
si:dkey-16l2.16
-
-
-
zgc:172131
-
-
-
-
-
-
-
-
SRL (1 of many)
-
-
rabl3
rabl6b
-
-
-
arl8a
-
-
ehd1a
zgc:171927
sept2
-
-
-
-
-
RAB19
sept15
rab35b
-
-
-
-
rab33ba
-
-
-
zgc:101559
-
rabl2
-
-
-
-
-
rab25a
-
-
-
-
-
-
-
-
-
-
-
dnajc27
rab39ba
-
-
-
-
-
-
-
si:ch1073-185p12.2
-
rab18b
-
-
-
-
-
rab3c
-
-
-
rab11bb
-
-
arfrp1
rasl11b
arl13b
-
-
ehd3
rab34a
sept9b
-
-
zgc:110197
-
-
-
-
rab5c
-
-
-
-
-
-
-
-
rab15
-
-
srprb

Introduction

Pfam

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.

InterPro

Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins [PUBMED:1449490]. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis [PUBMED:12429099]; ferrous iron transport protein B [PUBMED:20123128] and several others.

Reference

  1. Vernet C, Ribouchon MT, Chimini GPontarotti P; , Mamm Genome 1994;5:100-105.: Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. PUBMED:8180467 EPMC:8180467 .

  2. Bassler J, Kallas M, Hurt E;, J Biol Chem. 2006;281:24737-24744.: The NUG1 GTPase reveals and N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles. PUBMED:16803892 EPMC:16803892 .

  3. Jain N, Dhimole N, Khan AR, De D, Tomar SK, Sajish M, Dutta D, Parrack P, Prakash B;, Biochem Biophys Res Commun. 2009;379:201-205.: E. coli HflX interacts with 50S ribosomal subunits in presence of nucleotides. PUBMED:19109926 EPMC:19109926 .

  4. Dutta D, Bandyopadhyay K, Datta AB, Sardesai AA, Parrack P;, J Bacteriol. 2009;191:2307-2314.: Properties of HflX, an enigmatic protein from Escherichia coli. PUBMED:19181811 EPMC:19181811 .

  5. Shields MJ, Fischer JJ, Wieden HJ;, Biochemistry. 2009;48:10793-10802.: Toward understanding the function of the universally conserved GTPase HflX from Escherichia coli: a kinetic approach. PUBMED:19824612 EPMC:19824612.